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Items: 30

1.

Identification and quantification of defective virus genomes in high throughput sequencing data using DVG-profiler, a novel post-sequence alignment processing algorithm.

Bosma TJ, Karagiannis K, Santana-Quintero L, Ilyushina N, Zagorodnyaya T, Petrovskaya S, Laassri M, Donnelly RP, Rubin S, Simonyan V, Sauder CJ.

PLoS One. 2019 May 17;14(5):e0216944. doi: 10.1371/journal.pone.0216944. eCollection 2019.

2.

Severe atypical hand-foot-and-mouth disease in adults due to coxsackievirus A6: Clinical presentation and phylogenesis of CV-A6 strains.

Broccolo F, Drago F, Ciccarese G, Genoni A, Puggioni A, Rosa GM, Parodi A, Manukyan H, Laassri M, Chumakov K, Toniolo A.

J Clin Virol. 2019 Jan;110:1-6. doi: 10.1016/j.jcv.2018.11.003. Epub 2018 Nov 17.

PMID:
30472520
3.

Detection of bovine viral diarrhoea virus nucleic acid, but not infectious virus, in bovine serum used for human vaccine manufacture.

Laassri M, Mee ET, Connaughton SM, Manukyan H, Gruber M, Rodriguez-Hernandez C, Minor PD, Schepelmann S, Chumakov K, Wood DJ.

Biologicals. 2018 Sep;55:63-70. doi: 10.1016/j.biologicals.2018.06.002. Epub 2018 Jun 23.

PMID:
29941334
4.

Newcastle Disease Virus-Based Vectored Vaccine against Poliomyelitis.

Viktorova EG, Khattar SK, Kouiavskaia D, Laassri M, Zagorodnyaya T, Dragunsky E, Samal S, Chumakov K, Belov GA.

J Virol. 2018 Aug 16;92(17). pii: e00976-18. doi: 10.1128/JVI.00976-18. Print 2018 Sep 1.

5.

Quantitative multiplex one-step RT-PCR assay for identification and quantitation of Sabin strains of poliovirus in clinical and environmental specimens.

Manukyan H, Zagorodnyaya T, Ruttimann R, Manor Y, Bandyopadhyay A, Shulman L, Chumakov K, Laassri M.

J Virol Methods. 2018 Sep;259:74-80. doi: 10.1016/j.jviromet.2018.06.009. Epub 2018 Jun 18.

6.

Evolution of echovirus 11 in a chronically infected immunodeficient patient.

Laassri M, Zagorodnyaya T, Hassin-Baer S, Handsher R, Sofer D, Weil M, Karagiannis K, Simonyan V, Chumakov K, Shulman L.

PLoS Pathog. 2018 Mar 19;14(3):e1006943. doi: 10.1371/journal.ppat.1006943. eCollection 2018 Mar.

7.

Pressure for Pattern-Specific Intertypic Recombination between Sabin Polioviruses: Evolutionary Implications.

Korotkova E, Laassri M, Zagorodnyaya T, Petrovskaya S, Rodionova E, Cherkasova E, Gmyl A, Ivanova OE, Eremeeva TP, Lipskaya GY, Agol VI, Chumakov K.

Viruses. 2017 Nov 22;9(11). pii: E353. doi: 10.3390/v9110353.

8.

A Full-Length Infectious cDNA Clone of Zika Virus from the 2015 Epidemic in Brazil as a Genetic Platform for Studies of Virus-Host Interactions and Vaccine Development.

Tsetsarkin KA, Kenney H, Chen R, Liu G, Manukyan H, Whitehead SS, Laassri M, Chumakov K, Pletnev AG.

MBio. 2016 Aug 23;7(4). pii: e01114-16. doi: 10.1128/mBio.01114-16.

9.

Environmental surveillance of viruses by tangential flow filtration and metagenomic reconstruction.

Furtak V, Roivainen M, Mirochnichenko O, Zagorodnyaya T, Laassri M, Zaidi SZ, Rehman L, Alam MM, Chizhikov V, Chumakov K.

Euro Surveill. 2016 Apr 14;21(15). doi: 10.2807/1560-7917.ES.2016.21.15.30193. Erratum in: Euro Surveill. 2016 May 12;21(19):. Zaidic, Sohail Z [corrected to Zaidi, Sohail Z].

10.

Purification of mumps virus particles of high viability.

Chen H, Ngo L, Petrovskaya S, Gao Y, Laassri M, Rubin S.

J Virol Methods. 2016 Jul;233:6-9. doi: 10.1016/j.jviromet.2016.03.003. Epub 2016 Mar 15.

PMID:
26992653
11.

Deep Sequencing for Evaluation of Genetic Stability of Influenza A/California/07/2009 (H1N1) Vaccine Viruses.

Laassri M, Zagorodnyaya T, Plant EP, Petrovskaya S, Bidzhieva B, Ye Z, Simonyan V, Chumakov K.

PLoS One. 2015 Sep 25;10(9):e0138650. doi: 10.1371/journal.pone.0138650. eCollection 2015. Erratum in: PLoS One. 2015;10(11):e0142248. Majid, Laassri [corrected to Laassri, Majid].

12.

Allele-specific PCR for quantitative analysis of mutants in live viral vaccines.

Bidzhieva B, Laassri M, Chumakov K.

J Virol Methods. 2014 Jun;201:86-92. doi: 10.1016/j.jviromet.2014.02.012. Epub 2014 Mar 7.

13.

Deep sequencing approach for genetic stability evaluation of influenza A viruses.

Bidzhieva B, Zagorodnyaya T, Karagiannis K, Simonyan V, Laassri M, Chumakov K.

J Virol Methods. 2014 Apr;199:68-75. doi: 10.1016/j.jviromet.2013.12.018. Epub 2014 Jan 7.

PMID:
24406624
14.

Quantitative one-step RT-PCR assay for rapid and sensitive identification and titration of polioviruses in clinical specimens.

Laassri M, Dipiazza A, Bidzhieva B, Zagorodnyaya T, Chumakov K.

J Virol Methods. 2013 Apr;189(1):7-14. doi: 10.1016/j.jviromet.2012.12.015. Epub 2013 Jan 7.

PMID:
23305817
15.

MAPREC assay for quantitation of mutants in a recombinant flavivirus vaccine strain using near-infrared fluorescent dyes.

Bidzhieva B, Laassri M, Chumakov K.

J Virol Methods. 2011 Jul;175(1):14-9. doi: 10.1016/j.jviromet.2011.04.008. Epub 2011 Apr 14.

PMID:
21514323
16.

Microarray hybridization for assessment of the genetic stability of chimeric West Nile/dengue 4 virus.

Laassri M, Bidzhieva B, Speicher J, Pletnev AG, Chumakov K.

J Med Virol. 2011 May;83(5):910-20. doi: 10.1002/jmv.22033. Epub 2011 Feb 25.

17.

Biomarkers in the age of omics: time for a systems biology approach.

Abu-Asab MS, Chaouchi M, Alesci S, Galli S, Laassri M, Cheema AK, Atouf F, VanMeter J, Amri H.

OMICS. 2011 Mar;15(3):105-12. doi: 10.1089/omi.2010.0023. Epub 2011 Feb 14.

18.

Algorithmic assessment of vaccine-induced selective pressure and its implications on future vaccine candidates.

Abu-Asab MS, Laassri M, Amri H.

Adv Bioinformatics. 2010;2010:178069. doi: 10.1155/2010/178069. Epub 2010 Feb 1.

19.

Microarray-based assay for the detection of genetic variations of structural genes of West Nile virus.

Grinev A, Daniel S, Laassri M, Chumakov K, Chizhikov V, Rios M.

J Virol Methods. 2008 Dec;154(1-2):27-40. doi: 10.1016/j.jviromet.2008.09.015. Epub 2008 Oct 31.

PMID:
18930080
20.

Recovery of strains of the polyomavirus SV40 from rhesus monkey kidney cells dating from the 1950s to the early 1960s.

Peden K, Sheng L, Omeir R, Yacobucci M, Klutch M, Laassri M, Chumakov K, Pal A, Murata H, Lewis AM Jr.

Virology. 2008 Jan 5;370(1):63-76. Epub 2007 Sep 27.

21.

Randomized trial of inactivated and live polio vaccine schedules in Guatemalan infants.

Asturias EJ, Dueger EL, Omer SB, Melville A, Nates SV, Laassri M, Chumakov K, Halsey NA.

J Infect Dis. 2007 Sep 1;196(5):692-8. Epub 2007 Jul 23.

PMID:
17674310
22.

Microarray assay for evaluation of the genetic stability of modified vaccinia virus Ankara B5R gene.

Laassri M, Meseda CA, Williams O, Merchlinsky M, Weir JP, Chumakov K.

J Med Virol. 2007 Jun;79(6):791-802.

PMID:
17457926
23.

[An oligonucleotide microarray for detection and discrimination of orthopoxviruses based on oligonucleotide sequences of two viral genes].

Riabinin VA, Shundrin LA, Kostina EV, Laassri M, Chizhikov VE, Maksakova GA, Baturina OA, Pozdniakova LD, Feshchenko MV, Shchelkunov SN, Chumakov KM, Siniakov AN.

Mol Gen Mikrobiol Virusol. 2006;(4):23-30. Russian.

PMID:
17094655
24.

Microarray assay for detection and discrimination of Orthopoxvirus species.

Ryabinin VA, Shundrin LA, Kostina EB, Laassri M, Chizhikov V, Shchelkunov SN, Chumakov K, Sinyakov AN.

J Med Virol. 2006 Oct;78(10):1325-40.

PMID:
16927285
25.

Analysis of reversions in the 5'-untranslated region of attenuated poliovirus after sequential administration of inactivated and oral poliovirus vaccines.

Laassri M, Lottenbach K, Belshe R, Rennels M, Plotkin S, Chumakov K.

J Infect Dis. 2006 May 15;193(10):1344-9. Epub 2006 Apr 4.

PMID:
16619180
26.

Effect of different vaccination schedules on excretion of oral poliovirus vaccine strains.

Laassri M, Lottenbach K, Belshe R, Wolff M, Rennels M, Plotkin S, Chumakov K.

J Infect Dis. 2005 Dec 15;192(12):2092-8. Epub 2005 Nov 8.

PMID:
16288372
27.

Genomic analysis of vaccine-derived poliovirus strains in stool specimens by combination of full-length PCR and oligonucleotide microarray hybridization.

Laassri M, Dragunsky E, Enterline J, Eremeeva T, Ivanova O, Lottenbach K, Belshe R, Chumakov K.

J Clin Microbiol. 2005 Jun;43(6):2886-94.

28.

Detection and discrimination of orthopoxviruses using microarrays of immobilized oligonucleotides.

Laassri M, Chizhikov V, Mikheev M, Shchelkunov S, Chumakov K.

J Virol Methods. 2003 Sep;112(1-2):67-78.

PMID:
12951214
29.

Microarray analysis of evolution of RNA viruses: evidence of circulation of virulent highly divergent vaccine-derived polioviruses.

Cherkasova E, Laassri M, Chizhikov V, Korotkova E, Dragunsky E, Agol VI, Chumakov K.

Proc Natl Acad Sci U S A. 2003 Aug 5;100(16):9398-403. Epub 2003 Jul 23.

30.

Cloning of E6 and E7 genes of human papilloma virus type 18 and transformation potential of E7 gene and its mutants.

Laassri M, Gul'ko L, Vinokurova S, Kisseljova N, Veiko V, Kisseljov F.

Virus Genes. 1999;18(2):139-49.

PMID:
10403700

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