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Items: 1 to 50 of 79

1.

A Physiological and Genomic Comparison of Nitrosomonas Cluster 6a and 7 Ammonia-Oxidizing Bacteria.

Sedlacek CJ, McGowan B, Suwa Y, Sayavedra-Soto L, Laanbroek HJ, Stein LY, Norton JM, Klotz MG, Bollmann A.

Microb Ecol. 2019 Nov;78(4):985-994. doi: 10.1007/s00248-019-01378-8. Epub 2019 Apr 11.

PMID:
30976841
2.

Tide as Steering Factor in Structuring Archaeal and Bacterial Ammonia-Oxidizing Communities in Mangrove Forest Soils Dominated by Avicennia germinans and Rhizophora mangle.

Marcos MS, Barboza AD, Keijzer RM, Laanbroek HJ.

Microb Ecol. 2018 May;75(4):997-1008. doi: 10.1007/s00248-017-1091-y. Epub 2017 Oct 23.

3.

Numerical Relationships Between Archaeal and Bacterial amoA Genes Vary by Icelandic Andosol Classes.

Laanbroek HJ, Veenhuizen PTM, Keijzer RM, Hefting MM.

Microb Ecol. 2018 Jan;75(1):204-215. doi: 10.1007/s00248-017-1032-9. Epub 2017 Jul 13.

4.

Potential for Sulfate Reduction in Mangrove Forest Soils: Comparison between Two Dominant Species of the Americas.

Balk M, Keuskamp JA, Laanbroek HJ.

Front Microbiol. 2016 Nov 18;7:1855. eCollection 2016.

5.

Complete genome of Nitrosospira briensis C-128, an ammonia-oxidizing bacterium from agricultural soil.

Rice MC, Norton JM, Valois F, Bollmann A, Bottomley PJ, Klotz MG, Laanbroek HJ, Suwa Y, Stein LY, Sayavedra-Soto L, Woyke T, Shapiro N, Goodwin LA, Huntemann M, Clum A, Pillay M, Kyrpides N, Varghese N, Mikhailova N, Markowitz V, Palaniappan K, Ivanova N, Stamatis D, Reddy TB, Ngan CY, Daum C.

Stand Genomic Sci. 2016 Jul 28;11:46. doi: 10.1186/s40793-016-0168-4. eCollection 2016.

6.

Nitrous oxide emission related to ammonia-oxidizing bacteria and mitigation options from N fertilization in a tropical soil.

Soares JR, Cassman NA, Kielak AM, Pijl A, Carmo JB, Lourenço KS, Laanbroek HJ, Cantarella H, Kuramae EE.

Sci Rep. 2016 Jul 27;6:30349. doi: 10.1038/srep30349.

7.

Effects of Bacterial Community Members on the Proteome of the Ammonia-Oxidizing Bacterium Nitrosomonas sp. Strain Is79.

Sedlacek CJ, Nielsen S, Greis KD, Haffey WD, Revsbech NP, Ticak T, Laanbroek HJ, Bollmann A.

Appl Environ Microbiol. 2016 Jul 15;82(15):4776-4788. doi: 10.1128/AEM.01171-16. Print 2016 Aug 1.

8.

Potential Activity, Size, and Structure of Sulfate-Reducing Microbial Communities in an Exposed, Grazed and a Sheltered, Non-Grazed Mangrove Stand at the Red Sea Coast.

Balk M, Keuskamp JA, Laanbroek HJ.

Front Microbiol. 2015 Dec 22;6:1478. doi: 10.3389/fmicb.2015.01478. eCollection 2015.

9.

Shifts in the pelagic ammonia-oxidizing microbial communities along the eutrophic estuary of Yong River in Ningbo City, China.

Zhang Q, Tang F, Zhou Y, Xu J, Chen H, Wang M, Laanbroek HJ.

Front Microbiol. 2015 Oct 27;6:1180. doi: 10.3389/fmicb.2015.01180. eCollection 2015.

10.

The effect of human settlement on the abundance and community structure of ammonia oxidizers in tropical stream sediments.

Reis MP, Ávila MP, Keijzer RM, Barbosa FA, Chartone-Souza E, Nascimento AM, Laanbroek HJ.

Front Microbiol. 2015 Aug 31;6:898. doi: 10.3389/fmicb.2015.00898. eCollection 2015.

11.

Phylogenetic Characterization of Phosphatase-Expressing Bacterial Communities in Baltic Sea Sediments.

Steenbergh AK, Bodelier PL, Hoogveld HL, Slomp CP, Laanbroek HJ.

Microbes Environ. 2015;30(2):192-5. doi: 10.1264/jsme2.ME14074. Epub 2015 Mar 28.

12.

Nitrate ammonification in mangrove soils: a hidden source of nitrite?

Balk M, Laverman AM, Keuskamp JA, Laanbroek HJ.

Front Microbiol. 2015 Mar 2;6:166. doi: 10.3389/fmicb.2015.00166. eCollection 2015.

13.

Ammonia-limited conditions cause of Thaumarchaeal dominance in volcanic grassland soil.

Daebeler A, Bodelier PL, Hefting MM, Laanbroek HJ.

FEMS Microbiol Ecol. 2015 Mar;91(3). pii: fiv014. doi: 10.1093/femsec/fiv014. Epub 2015 Feb 5.

PMID:
25764462
14.

The influence of human settlement on the distribution and diversity of iron-oxidizing bacteria belonging to the Gallionellaceae in tropical streams.

Reis MP, Avila MP, Costa PS, Barbosa FA, Laanbroek HJ, Chartone-Souza E, Nascimento AM.

Front Microbiol. 2014 Nov 24;5:630. doi: 10.3389/fmicb.2014.00630. eCollection 2014.

15.

Interactions between Thaumarchaea, Nitrospira and methanotrophs modulate autotrophic nitrification in volcanic grassland soil.

Daebeler A, Bodelier PL, Yan Z, Hefting MM, Jia Z, Laanbroek HJ.

ISME J. 2014 Dec;8(12):2397-410. doi: 10.1038/ismej.2014.81. Epub 2014 May 23.

16.

Effects of increased summer flooding on nitrogen dynamics in impounded mangroves.

Verhoeven JT, Laanbroek HJ, Rains MC, Whigham DF.

J Environ Manage. 2014 Jun 15;139:217-26. doi: 10.1016/j.jenvman.2014.02.035. Epub 2014 Apr 19.

PMID:
24751377
17.

Effect of redox conditions on bacterial community structure in Baltic Sea sediments with contrasting phosphorus fluxes.

Steenbergh AK, Bodelier PL, Slomp CP, Laanbroek HJ.

PLoS One. 2014 Mar 25;9(3):e92401. doi: 10.1371/journal.pone.0092401. eCollection 2014. Erratum in: PLoS One. 2014;9(7):e102288.

18.

Changes in community composition of ammonia-oxidizing betaproteobacteria from stands of Black mangrove (Avicennia germinans) in response to ammonia enrichment and more oxic conditions.

Laanbroek HJ, Keijzer RM, Verhoeven JT, Whigham DF.

Front Microbiol. 2013 Nov 20;4:343. doi: 10.3389/fmicb.2013.00343. eCollection 2013.

19.

Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations.

Bollmann A, Sedlacek CJ, Norton J, Laanbroek HJ, Suwa Y, Stein LY, Klotz MG, Arp D, Sayavedra-Soto L, Lu M, Bruce D, Detter C, Tapia R, Han J, Woyke T, Lucas SM, Pitluck S, Pennacchio L, Nolan M, Land ML, Huntemann M, Deshpande S, Han C, Chen A, Kyrpides N, Mavromatis K, Markowitz V, Szeto E, Ivanova N, Mikhailova N, Pagani I, Pati A, Peters L, Ovchinnikova G, Goodwin LA.

Stand Genomic Sci. 2013 Feb 25;7(3):469-82. doi: 10.4056/sigs.3517166. eCollection 2013.

20.

Temporal and spatial coexistence of archaeal and bacterial amoA genes and gene transcripts in Lake Lucerne.

Vissers EW, Anselmetti FS, Bodelier PL, Muyzer G, Schleper C, Tourna M, Laanbroek HJ.

Archaea. 2013;2013:289478. doi: 10.1155/2013/289478. Epub 2013 Mar 5.

21.

Does microbial stoichiometry modulate eutrophication of aquatic ecosystems?

Steenbergh AK, Bodelier PL, Heldal M, Slomp CP, Laanbroek HJ.

Environ Microbiol. 2013 May;15(5):1572-9. doi: 10.1111/1462-2920.12042. Epub 2012 Dec 11.

PMID:
23227825
22.

Archaeal dominated ammonia-oxidizing communities in Icelandic grassland soils are moderately affected by long-term N fertilization and geothermal heating.

Daebeler A, Abell GC, Bodelier PL, Bodrossy L, Frampton DM, Hefting MM, Laanbroek HJ.

Front Microbiol. 2012 Oct 4;3:352. doi: 10.3389/fmicb.2012.00352. eCollection 2012.

23.

Seasonal and vertical distribution of putative ammonia-oxidizing thaumarchaeotal communities in an oligotrophic lake.

Vissers EW, Blaga CI, Bodelier PL, Muyzer G, Schleper C, Sinninghe Damsté JS, Tourna M, Laanbroek HJ.

FEMS Microbiol Ecol. 2013 Feb;83(2):515-26. doi: 10.1111/1574-6941.12013. Epub 2012 Nov 23.

24.

The Distribution of Ammonia-Oxidizing Betaproteobacteria in Stands of Black Mangroves (Avicennia germinans).

Laanbroek HJ, Keijzer RM, Verhoeven JT, Whigham DF.

Front Microbiol. 2012 Apr 23;3:153. doi: 10.3389/fmicb.2012.00153. eCollection 2012.

25.

Spatial patterns of iron- and methane-oxidizing bacterial communities in an irregularly flooded, riparian wetland.

Wang J, Krause S, Muyzer G, Meima-Franke M, Laanbroek HJ, Bodelier PL.

Front Microbiol. 2012 Feb 23;3:64. doi: 10.3389/fmicb.2012.00064. eCollection 2012.

26.

Genome sequence of Nitrosomonas sp. strain AL212, an ammonia-oxidizing bacterium sensitive to high levels of ammonia.

Suwa Y, Norton JM, Bollmann A, Klotz MG, Stein LY, Laanbroek HJ, Arp DJ, Goodwin LA, Chertkov O, Held B, Bruce D, Detter JC, Detter JC, Tapia R, Han CS.

J Bacteriol. 2011 Sep;193(18):5047-8. doi: 10.1128/JB.05521-11. Erratum in: J Bacteriol. 2011 Nov;193(21):6112. Yuichi, Suwa [corrected to Suwa, Yuichi].

27.

Distribution and diversity of Gallionella-like neutrophilic iron oxidizers in a tidal freshwater marsh.

Wang J, Vollrath S, Behrends T, Bodelier PL, Muyzer G, Meima-Franke M, Den Oudsten F, Van Cappellen P, Laanbroek HJ.

Appl Environ Microbiol. 2011 Apr;77(7):2337-44. doi: 10.1128/AEM.02448-10. Epub 2011 Feb 11.

28.

Isolation, cultivation, and characterization of ammonia-oxidizing bacteria and archaea adapted to low ammonium concentrations.

Bollmann A, French E, Laanbroek HJ.

Methods Enzymol. 2011;486:55-88. doi: 10.1016/B978-0-12-381294-0.00003-1.

PMID:
21185431
29.

Quantitative assessment of ammonia-oxidizing bacterial communities in the epiphyton of submerged macrophytes in shallow lakes.

Coci M, Nicol GW, Pilloni GN, Schmid M, Kamst-van Agterveld MP, Bodelier PL, Laanbroek HJ.

Appl Environ Microbiol. 2010 Mar;76(6):1813-21. doi: 10.1128/AEM.01917-09. Epub 2010 Jan 22.

30.

Response of the sulfate-reducing community to the re-establishment of estuarine conditions in two contrasting soils: a mesocosm approach.

Miletto M, Loeb R, Antheunisse AM, Bodelier PL, Laanbroek HJ.

Microb Ecol. 2010 Jan;59(1):109-20. doi: 10.1007/s00248-009-9614-9.

PMID:
19953240
31.
32.

A nested PCR approach for improved recovery of archaeal 16S rRNA gene fragments from freshwater samples.

Vissers EW, Bodelier PL, Muyzer G, Laanbroek HJ.

FEMS Microbiol Lett. 2009 Sep;298(2):193-8. doi: 10.1111/j.1574-6968.2009.01718.x. Epub 2009 Jul 10.

33.

Diversity of iron oxidizers in wetland soils revealed by novel 16S rRNA primers targeting Gallionella-related bacteria.

Wang J, Muyzer G, Bodelier PL, Laanbroek HJ.

ISME J. 2009 Jun;3(6):715-25. doi: 10.1038/ismej.2009.7. Epub 2009 Feb 19.

PMID:
19225553
34.

Niche separation of ammonia-oxidizing bacteria across a tidal freshwater marsh.

Laanbroek HJ, Speksnijder AG.

Environ Microbiol. 2008 Nov;10(11):3017-25. doi: 10.1111/j.1462-2920.2008.01655.x. Epub 2008 May 9.

PMID:
18479444
35.

Biogeography of sulfate-reducing prokaryotes in river floodplains.

Miletto M, Loy A, Antheunisse AM, Loeb R, Bodelier PL, Laanbroek HJ.

FEMS Microbiol Ecol. 2008 Jun;64(3):395-406. doi: 10.1111/j.1574-6941.2008.00490.x.

36.

Epiphyton as a niche for ammonia-oxidizing bacteria: detailed comparison with benthic and pelagic compartments in shallow freshwater lakes.

Coci M, Bodelier PL, Laanbroek HJ.

Appl Environ Microbiol. 2008 Apr;74(7):1963-71. doi: 10.1128/AEM.00694-07. Epub 2008 Feb 8.

37.
38.

Population dynamics and diversity of viruses, bacteria and phytoplankton in a shallow eutrophic lake.

Tijdens M, Hoogveld HL, Kamst-van Agterveld MP, Simis SG, Baudoux AC, Laanbroek HJ, Gons HJ.

Microb Ecol. 2008 Jul;56(1):29-42. Epub 2007 Oct 10.

39.

Limitations of the use of group-specific primers in real-time PCR as appear from quantitative analyses of closely related ammonia-oxidising species.

Sekido T, Bodelier PL, Shoji T, Suwa Y, Laanbroek HJ.

Water Res. 2008 Feb;42(4-5):1093-101. Epub 2007 Sep 7.

PMID:
17889247
40.

Improved PCR-DGGE for high resolution diversity screening of complex sulfate-reducing prokaryotic communities in soils and sediments.

Miletto M, Bodelier PL, Laanbroek HJ.

J Microbiol Methods. 2007 Jul;70(1):103-11. Epub 2007 Apr 5.

PMID:
17481757
41.

Animal-plant-microbe interactions: direct and indirect effects of swan foraging behaviour modulate methane cycling in temperate shallow wetlands.

Bodelier PL, Stomp M, Santamaria L, Klaassen M, Laanbroek HJ.

Oecologia. 2006 Aug;149(2):233-44. Epub 2006 May 31.

PMID:
16736186
42.

Water management strategies against toxic Microcystis blooms in the Dutch delta.

Verspagen JM, Passarge J, Jöhnk KD, Visser PM, Peperzak L, Boers P, Laanbroek HJ, Huisman J.

Ecol Appl. 2006 Feb;16(1):313-27.

PMID:
16705982
43.

Spatial distribution and inhibition by ammonium of methane oxidation in intertidal freshwater marshes.

Van Der Nat F, De Brouwer J, Middelburg JJ, Laanbroek HJ.

Appl Environ Microbiol. 1997 Dec;63(12):4734-40.

44.

Production of NO and N(inf2)O by Pure Cultures of Nitrifying and Denitrifying Bacteria during Changes in Aeration.

Kester RA, De Boer W, Laanbroek HJ.

Appl Environ Microbiol. 1997 Oct;63(10):3872-7.

45.

Effect of salinity on temporal and spatial dynamics of ammonia-oxidising bacteria from intertidal freshwater sediment.

Coci M, Riechmann D, Bodelier PL, Stefani S, Zwart G, Laanbroek HJ.

FEMS Microbiol Ecol. 2005 Aug 1;53(3):359-68.

46.

New DGGE strategies for the analyses of methanotrophic microbial communities using different combinations of existing 16S rRNA-based primers.

Bodelier PL, Meima-Franke M, Zwart G, Laanbroek HJ.

FEMS Microbiol Ecol. 2005 Apr 1;52(2):163-74. Epub 2004 Dec 8.

47.
48.

Analysis of structural and physiological profiles to assess the effects of Cu on biofilm microbial communities.

Massieux B, Boivin ME, Van Den Ende FP, Langenskiöld J, Marvan P, Barranguet C, Admiraal W, Laanbroek HJ, Zwart G.

Appl Environ Microbiol. 2004 Aug;70(8):4512-21.

49.

Detecting the phosphate status of phytoplankton by enzyme-labelled fluorescence and flow cytometry.

Dignum M, Hoogveld HL, Matthijs HC, Laanbroek HJ, Pel R.

FEMS Microbiol Ecol. 2004 Apr 1;48(1):29-38. doi: 10.1016/j.femsec.2003.12.007.

50.

Nitrogen as a regulatory factor of methane oxidation in soils and sediments.

Bodelier PL, Laanbroek HJ.

FEMS Microbiol Ecol. 2004 Mar 1;47(3):265-77. doi: 10.1016/S0168-6496(03)00304-0. Review.

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