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Rapid viral diagnosis and ambulatory management of suspected COVID-19 cases presenting at the infectious diseases referral hospital in Marseille, France, - January 31st to March 1st, 2020: A respiratory virus snapshot.

Amrane S, Tissot-Dupont H, Doudier B, Eldin C, Hocquart M, Mailhe M, Dudouet P, Ormières E, Ailhaud L, Parola P, Lagier JC, Brouqui P, Zandotti C, Ninove L, Luciani L, Boschi C, La Scola B, Raoult D, Million M, Colson P, Gautret P.

Travel Med Infect Dis. 2020 Mar 20:101632. doi: 10.1016/j.tmaid.2020.101632. [Epub ahead of print]


Hydroxychloroquine and azithromycin as a treatment of COVID-19: results of an open-label non-randomized clinical trial.

Gautret P, Lagier JC, Parola P, Hoang VT, Meddeb L, Mailhe M, Doudier B, Courjon J, Giordanengo V, Vieira VE, Dupont HT, Honoré S, Colson P, Chabrière E, La Scola B, Rolain JM, Brouqui P, Raoult D.

Int J Antimicrob Agents. 2020 Mar 20:105949. doi: 10.1016/j.ijantimicag.2020.105949. [Epub ahead of print]


Description of Virulent Factors and Horizontal Gene Transfers of Keratitis-Associated Amoeba Acanthamoeba Triangularis by Genome Analysis.

Hasni I, Andréani J, Colson P, La Scola B.

Pathogens. 2020 Mar 16;9(3). pii: E217. doi: 10.3390/pathogens9030217.


Testing the repatriated for SARS-Cov2: Should laboratory-based quarantine replace traditional quarantine?

Lagier JC, Colson P, Tissot Dupont H, Salomon J, Doudier B, Aubry C, Gouriet F, Baron S, Dudouet P, Flores R, Ailhaud L, Gautret P, Parola P, La Scola B, Raoult D, Brouqui P.

Travel Med Infect Dis. 2020 Mar 14:101624. doi: 10.1016/j.tmaid.2020.101624. [Epub ahead of print]


High Content Screening, a reliable system for Coxiella burnetii isolation from clinical samples.

Francis R, Mioulane M, Le Bideau M, Mati MC, Fournier PE, Raoult D, Bou Khalil JY, La Scola B.

J Clin Microbiol. 2020 Mar 4. pii: JCM.02081-19. doi: 10.1128/JCM.02081-19. [Epub ahead of print]


Letter to the editor: Plenty of coronaviruses but no SARS-CoV-2.

Colson P, La Scola B, Esteves-Vieira V, Ninove L, Zandotti C, Jimeno MT, Gazin C, Bedotto M, Filosa V, Giraud-Gatineau A, Chaudet H, Brouqui P, Lagier JC, Raoult D.

Euro Surveill. 2020 Feb;25(8). doi: 10.2807/1560-7917.ES.2020.25.8.2000171. No abstract available.


Corynebacterium neomassiliense sp. nov., a new bacterium isolated in a stool sample from a healthy male pygmy.

Boxberger M, Hasni I, Bilen M, La Scola B.

New Microbes New Infect. 2020 Jan 23;34:100644. doi: 10.1016/j.nmni.2019.100644. eCollection 2020 Mar.


Parabacteroides pacaensis sp. nov. and Parabacteroides provencensis sp. nov., two new species identified from human gut microbiota.

Benabdelkader S, Naud S, Lo CI, Fadlane A, Traore SI, Aboudharam G, La Scola B.

New Microbes New Infect. 2020 Jan 7;34:100642. doi: 10.1016/j.nmni.2019.100642. eCollection 2020 Mar.


Isolation and genomic characterization of a new mimivirus of lineage B from a Brazilian river.

Dos Santos Silva LK, Rodrigues RAL, Dos Santos Pereira Andrade AC, Hikida H, Andreani J, Levasseur A, La Scola B, Abrahão JS.

Arch Virol. 2020 Feb 12. doi: 10.1007/s00705-020-04542-5. [Epub ahead of print]


Core gene-based molecular detection and identification of Acanthamoeba species.

Chelkha N, Jardot P, Moussaoui I, Levasseur A, La Scola B, Colson P.

Sci Rep. 2020 Jan 31;10(1):1583. doi: 10.1038/s41598-020-57998-5.


Evidence of a Cellulosic Layer in Pandoravirus massiliensis Tegument and the Mystery of the Genetic Support of Its Biosynthesis.

Brahim Belhaouari D, Baudoin JP, Gnankou F, Di Pinto F, Colson P, Aherfi S, La Scola B.

Front Microbiol. 2019 Dec 20;10:2932. doi: 10.3389/fmicb.2019.02932. eCollection 2019.


Corynebacterium dentalis sp. nov., a new bacterium isolated from dental plaque of a woman with periodontitis.

Benabdelkader S, Boxberger M, Lo CI, Aboudharam G, La Scola B, Fenollar F.

New Microbes New Infect. 2019 Nov 29;33:100625. doi: 10.1016/j.nmni.2019.100625. eCollection 2020 Jan.


First genome sequence of Cellulomonas hominis isolated from cerebrospinal fluid in the context of sudden infant death syndrome.

Sardi S, Garcia P, Zandotti C, Chanteloup A, Baptiste E, La Scola B, Andreani J.

New Microbes New Infect. 2019 Nov 29;33:100623. doi: 10.1016/j.nmni.2019.100623. eCollection 2020 Jan. No abstract available.


In-depth analysis of the replication cycle of Orpheovirus.

Souza F, Rodrigues R, Reis E, Lima M, La Scola B, Abrahão J.

Virol J. 2019 Dec 16;16(1):158. doi: 10.1186/s12985-019-1268-8.


Investigation of potential pathogenicity of Willaertia magna by investigating the transfer of bacteria pathogenicity genes into its genome.

Hasni I, Chelkha N, Baptiste E, Mameri MR, Lachuer J, Plasson F, Colson P, La Scola B.

Sci Rep. 2019 Dec 4;9(1):18318. doi: 10.1038/s41598-019-54580-6.


Human Infection with Orf Virus and Description of Its Whole Genome, France, 2017.

Andreani J, Fongue J, Bou Khalil JY, David L, Mougari S, Le Bideau M, Abrahão J, Berbis P, La Scola B.

Emerg Infect Dis. 2019 Dec;25(12):2197-2204. doi: 10.3201/eid2512.181513.


Molecular epidemiology of Clostridium neonatale and its relationship with the occurrence of necrotizing enterocolitis in preterm neonates.

Hosny M, Baptiste E, Levasseur A, La Scola B.

New Microbes New Infect. 2019 Oct 15;32:100612. doi: 10.1016/j.nmni.2019.100612. eCollection 2019 Nov.


Single Cell Micro-aspiration as an Alternative Strategy to Fluorescence-activated Cell Sorting for Giant Virus Mixture Separation.

Sahmi-Bounsiar D, Boratto PVM, Oliveira GP, Bou Khalil JY, La Scola B, Andreani J.

J Vis Exp. 2019 Oct 27;(152). doi: 10.3791/60148.


Giant virus vs amoeba: fight for supremacy.

Oliveira G, La Scola B, Abrahão J.

Virol J. 2019 Nov 4;16(1):126. doi: 10.1186/s12985-019-1244-3. Review.


Isolation of Yasminevirus, the First Member of Klosneuvirinae Isolated in Coculture with Vermamoeba vermiformis, Demonstrates an Extended Arsenal of Translational Apparatus Components.

Bajrai LH, Mougari S, Andreani J, Baptiste E, Delerce J, Raoult D, Azhar EI, La Scola B, Levasseur A.

J Virol. 2019 Dec 12;94(1). pii: e01534-19. doi: 10.1128/JVI.01534-19. Print 2019 Dec 12.


Human metallo-β-lactamase enzymes degrade penicillin.

Diene SM, Pinault L, Keshri V, Armstrong N, Khelaifia S, Chabrière E, Caetano-Anolles G, Colson P, La Scola B, Rolain JM, Pontarotti P, Raoult D.

Sci Rep. 2019 Aug 21;9(1):12173. doi: 10.1038/s41598-019-48723-y.


Virophages of Giant Viruses: An Update at Eleven.

Mougari S, Sahmi-Bounsiar D, Levasseur A, Colson P, La Scola B.

Viruses. 2019 Aug 8;11(8). pii: E733. doi: 10.3390/v11080733. Review.


Editorial: Large and Giant DNA Viruses.

Abrahão J, La Scola B.

Front Microbiol. 2019 Jul 10;10:1608. doi: 10.3389/fmicb.2019.01608. eCollection 2019. No abstract available.


Metagenomic Analysis of Microdissected Valvular Tissue for Etiologic Diagnosis of Blood Culture Negative Endocarditis.

Million M, Gaudin M, Melenotte C, Chasson L, Edouard S, Verdonk C, Prudent E, Amphoux B, Meresse S, Dorent R, Lepidi H, La Scola B, Gorvel JP, Desnues C, Raoult D.

Clin Infect Dis. 2019 Jul 15. pii: ciz655. doi: 10.1093/cid/ciz655. [Epub ahead of print]


High-throughput isolation of giant viruses using high-content screening.

Francis R, Ominami Y, Bou Khalil JY, La Scola B.

Commun Biol. 2019 Jun 19;2:216. doi: 10.1038/s42003-019-0475-6. eCollection 2019.


Genome sequence and description of Alterileibacterium massiliense gen. nov., sp. nov., a new bacterium isolated from human ileum of a patient with Crohn's disease.

Boxberger M, Anani H, La Scola B.

New Microbes New Infect. 2019 Mar 21;30:100533. doi: 10.1016/j.nmni.2019.100533. eCollection 2019 Jul.


Role of the R349 Gene and Its Repeats in the MIMIVIRE Defense System.

Mougari S, Abrahao J, Oliveira GP, Bou Khalil JY, La Scola B.

Front Microbiol. 2019 May 22;10:1147. doi: 10.3389/fmicb.2019.01147. eCollection 2019.


Guarani Virophage, a New Sputnik-Like Isolate From a Brazilian Lake.

Mougari S, Bekliz M, Abrahao J, Di Pinto F, Levasseur A, La Scola B.

Front Microbiol. 2019 May 3;10:1003. doi: 10.3389/fmicb.2019.01003. eCollection 2019.


Trapping the Enemy: Vermamoeba vermiformis Circumvents Faustovirus Mariensis Dissemination by Enclosing Viral Progeny inside Cysts.

Borges I, Rodrigues RAL, Dornas FP, Almeida G, Aquino I, Bonjardim CA, Kroon EG, La Scola B, Abrahão JS.

J Virol. 2019 Jun 28;93(14). pii: e00312-19. doi: 10.1128/JVI.00312-19. Print 2019 Jul 15.


Microscopic Analysis of the Tupanvirus Cycle in Vermamoeba vermiformis.

Silva LCF, Rodrigues RAL, Oliveira GP, Dornas FP, La Scola B, Kroon EG, Abrahão JS.

Front Microbiol. 2019 Apr 3;10:671. doi: 10.3389/fmicb.2019.00671. eCollection 2019.


Discovery and Further Studies on Giant Viruses at the IHU Mediterranee Infection That Modified the Perception of the Virosphere.

Rolland C, Andreani J, Louazani AC, Aherfi S, Francis R, Rodrigues R, Silva LS, Sahmi D, Mougari S, Chelkha N, Bekliz M, Silva L, Assis F, Dornas F, Khalil JYB, Pagnier I, Desnues C, Levasseur A, Colson P, Abrahão J, La Scola B.

Viruses. 2019 Mar 30;11(4). pii: E312. doi: 10.3390/v11040312. Review.


The multiple origins of proteins present in tupanvirus particles.

Miranda Boratto PV, Dos Santos Pereira Andrade AC, Araújo Lima Rodrigues R, La Scola B, Santos Abrahão J.

Curr Opin Virol. 2019 Jun;36:25-31. doi: 10.1016/j.coviro.2019.02.007. Epub 2019 Mar 16. Review.


Specific clones of Trichomonas tenax are associated with periodontitis.

Benabdelkader S, Andreani J, Gillet A, Terrer E, Pignoly M, Chaudet H, Aboudharam G, La Scola B.

PLoS One. 2019 Mar 11;14(3):e0213338. doi: 10.1371/journal.pone.0213338. eCollection 2019.


Multidisciplinary evaluation of Clostridium butyricum clonality isolated from preterm neonates with necrotizing enterocolitis in South France between 2009 and 2017.

Hosny M, Bou Khalil JY, Caputo A, Abdallah RA, Levasseur A, Colson P, Cassir N, La Scola B.

Sci Rep. 2019 Feb 14;9(1):2077. doi: 10.1038/s41598-019-38773-7.


Clostridium pacaense: a new species within the genus Clostridium.

Hosny M, Abdallah RA, Bou Khalil J, Fontanini A, Baptiste E, Armstrong N, La Scola B.

New Microbes New Infect. 2018 Dec 31;28:6-10. doi: 10.1016/j.nmni.2018.12.003. eCollection 2019 Mar.


Atypical Cowpox Virus Infection in Smallpox-Vaccinated Patient, France.

Andreani J, Arnault JP, Bou Khalil JY, Abrahão J, Tomei E, Vial E, Le Bideau M, Raoult D, La Scola B.

Emerg Infect Dis. 2019 Feb;25(2):212-219. doi: 10.3201/eid2502.171433.


Tupanvirus-infected amoebas are induced to aggregate with uninfected cells promoting viral dissemination.

Oliveira G, Silva L, Leão T, Mougari S, da Fonseca FG, Kroon EG, La Scola B, Abrahão JS.

Sci Rep. 2019 Jan 17;9(1):183. doi: 10.1038/s41598-018-36552-4.


Ancestrality and Mosaicism of Giant Viruses Supporting the Definition of the Fourth TRUC of Microbes.

Colson P, Levasseur A, La Scola B, Sharma V, Nasir A, Pontarotti P, Caetano-Anollés G, Raoult D.

Front Microbiol. 2018 Nov 27;9:2668. doi: 10.3389/fmicb.2018.02668. eCollection 2018.


Faustovirus E12 Transcriptome Analysis Reveals Complex Splicing in Capsid Gene.

Cherif Louazani A, Baptiste E, Levasseur A, Colson P, La Scola B.

Front Microbiol. 2018 Oct 23;9:2534. doi: 10.3389/fmicb.2018.02534. eCollection 2018.


Higher education at the Institut Hospitalo-Universitaire Méditerranée Infection.

La Scola B, Fournier PE, Mege JL, Colson P.

New Microbes New Infect. 2018 May 3;26:S109-S113. doi: 10.1016/j.nmni.2018.04.006. eCollection 2018 Nov.


Naming microorganisms: the contribution of the IHU Méditerranée Infection, Marseille, France.

Lagier JC, Bilen M, Cadoret F, Drancourt M, Fournier PE, La Scola B, Raoult D.

New Microbes New Infect. 2018 Aug 11;26:S89-S95. doi: 10.1016/j.nmni.2018.08.006. eCollection 2018 Nov.


Correlative light electron microscopy of giant viruses with the SECOM system.

Baudoin JP, Hari S, Sahmi-Bounsiar D, Traore SI, Bou-Khalil J, Andréani J, La Scola B.

New Microbes New Infect. 2018 Sep 20;26:110-113. doi: 10.1016/j.nmni.2018.09.006. eCollection 2018 Nov.


"Tupanvirus", a new genus in the family Mimiviridae.

Rodrigues RAL, Mougari S, Colson P, La Scola B, Abrahão JS.

Arch Virol. 2019 Jan;164(1):325-331. doi: 10.1007/s00705-018-4067-4. Epub 2018 Oct 5.


Giant mimiviruses escape many canonical criteria of the virus definition.

Colson P, Ominami Y, Hisada A, La Scola B, Raoult D.

Clin Microbiol Infect. 2019 Feb;25(2):147-154. doi: 10.1016/j.cmi.2018.09.010. Epub 2018 Sep 26. Review.


Exploring the Microbiota of Diabetic Foot Infections With Culturomics.

Jneid J, Cassir N, Schuldiner S, Jourdan N, Sotto A, Lavigne JP, La Scola B.

Front Cell Infect Microbiol. 2018 Aug 14;8:282. doi: 10.3389/fcimb.2018.00282. eCollection 2018.


A Large Open Pangenome and a Small Core Genome for Giant Pandoraviruses.

Aherfi S, Andreani J, Baptiste E, Oumessoum A, Dornas FP, Andrade ACDSP, Chabriere E, Abrahao J, Levasseur A, Raoult D, La Scola B, Colson P.

Front Microbiol. 2018 Jul 10;9:1486. doi: 10.3389/fmicb.2018.01486. eCollection 2018.


Metagenomic binning reconstruction coupled with automatic pipeline annotation and giant viruses: A potential source of mistake in annotations.

Andreani J, La Scola B.

Virus Res. 2018 Aug 15;255:36-38. doi: 10.1016/j.virusres.2018.07.001. Epub 2018 Jul 4.


Genomic analysis of a Raoultella ornithinolytica strain causing prosthetic joint infection in an immunocompetent patient.

Beye M, Hasni I, Seng P, Michelle C, La Scola B, Raoult D, Fournier PE.

Sci Rep. 2018 Jun 21;8(1):9462. doi: 10.1038/s41598-018-27833-z.


'Selenomonas massiliensis,' a new anaerobic bacterial species isolated from human oral microbiota.

Belkacemi S, Cassir N, Delerce J, Cadoret F, La Scola B.

New Microbes New Infect. 2018 Mar 30;24:1-3. doi: 10.1016/j.nmni.2018.03.006. eCollection 2018 Jul.


Deciphering the genomes of 16 Acanthamoeba species does not provide evidence of integration of known giant virus-associated mobile genetic elements.

Chelkha N, Colson P, Levasseur A, La Scola B.

Virus Res. 2018 Jun 2;251:14-16. doi: 10.1016/j.virusres.2018.04.018. Epub 2018 Apr 30.


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