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Items: 1 to 50 of 125

1.

One-time nitrogen fertilization shifts switchgrass soil microbiomes within a context of larger spatial and temporal variation.

Chen H, Yang ZK, Yip D, Morris RH, Lebreux SJ, Cregger MA, Klingeman DM, Hui D, Hettich RL, Wilhelm SW, Wang G, Löffler FE, Schadt CW.

PLoS One. 2019 Jun 18;14(6):e0211310. doi: 10.1371/journal.pone.0211310. eCollection 2019.

2.

Viral and bacterial community responses to stimulated Fe(III)-bioreduction during simulated subsurface bioremediation.

Liang X, Zhuang J, Löffler FE, Zhang Y, DeBruyn JM, Wilhelm SW, Schaeffer SM, Radosevich M.

Environ Microbiol. 2019 Jun;21(6):2043-2055. doi: 10.1111/1462-2920.14566. Epub 2019 Mar 28.

PMID:
30773777
3.

Proteogenomics Reveals Novel Reductive Dehalogenases and Methyltransferases Expressed during Anaerobic Dichloromethane Metabolism.

Kleindienst S, Chourey K, Chen G, Murdoch RW, Higgins SA, Iyer R, Campagna SR, Mack EE, Seger ES, Hettich RL, Löffler FE.

Appl Environ Microbiol. 2019 Mar 6;85(6). pii: e02768-18. doi: 10.1128/AEM.02768-18. Print 2019 Mar 15.

PMID:
30658979
4.

Nitrous Oxide Is a Potent Inhibitor of Bacterial Reductive Dechlorination.

Yin Y, Yan J, Chen G, Murdoch FK, Pfisterer N, Löffler FE.

Environ Sci Technol. 2019 Jan 15;53(2):692-701. doi: 10.1021/acs.est.8b05871. Epub 2019 Jan 4.

PMID:
30558413
5.

Draft Genome Sequences of the 1,2-Dichloropropane-Respiring Dehalococcoides mccartyi Strains RC and KS.

Higgins SA, Padilla-Crespo E, Löffler FE.

Microbiol Resour Announc. 2018 Sep 13;7(10). pii: e01081-18. doi: 10.1128/MRA.01081-18. eCollection 2018 Sep.

6.

Normalized Quantitative PCR Measurements as Predictors for Ethene Formation at Sites Impacted with Chlorinated Ethenes.

Clark K, Taggart DM, Baldwin BR, Ritalahti KM, Murdoch RW, Hatt JK, Löffler FE.

Environ Sci Technol. 2018 Nov 20;52(22):13410-13420. doi: 10.1021/acs.est.8b04373. Epub 2018 Nov 8.

PMID:
30365883
7.

Phylogenomics Reveal the Dynamic Evolution of Fungal Nitric Oxide Reductases and Their Relationship to Secondary Metabolism.

Higgins SA, Schadt CW, Matheny PB, Löffler FE.

Genome Biol Evol. 2018 Sep 1;10(9):2474-2489. doi: 10.1093/gbe/evy187.

8.

Impacts of low-temperature thermal treatment on microbial detoxification of tetrachloroethene under continuous flow conditions.

Marcet TF, Cápiro NL, Yang Y, Löffler FE, Pennell KD.

Water Res. 2018 Nov 15;145:21-29. doi: 10.1016/j.watres.2018.07.076. Epub 2018 Jul 31.

PMID:
30114555
9.

Dual Carbon-Chlorine Isotope Analysis Indicates Distinct Anaerobic Dichloromethane Degradation Pathways in Two Members of Peptococcaceae.

Chen G, Shouakar-Stash O, Phillips E, Justicia-Leon SD, Gilevska T, Sherwood Lollar B, Mack EE, Seger ES, Löffler FE.

Environ Sci Technol. 2018 Aug 7;52(15):8607-8616. doi: 10.1021/acs.est.8b01583. Epub 2018 Jul 18.

PMID:
29975517
10.

Release of Electron Donors during Thermal Treatment of Soils.

Marcet TF, Cápiro NL, Morris LA, Hassan SM, Yang Y, Löffler FE, Pennell KD.

Environ Sci Technol. 2018 Mar 20;52(6):3642-3651. doi: 10.1021/acs.est.7b06014. Epub 2018 Mar 8.

PMID:
29516734
11.

Denitrification by Anaeromyxobacter dehalogenans, a Common Soil Bacterium Lacking the Nitrite Reductase Genes nirS and nirK.

Onley JR, Ahsan S, Sanford RA, Löffler FE.

Appl Environ Microbiol. 2018 Jan 31;84(4). pii: e01985-17. doi: 10.1128/AEM.01985-17. Print 2018 Feb 15.

12.

Purinyl-cobamide is a native prosthetic group of reductive dehalogenases.

Yan J, Bi M, Bourdon AK, Farmer AT, Wang PH, Molenda O, Quaile AT, Jiang N, Yang Y, Yin Y, Şimşir B, Campagna SR, Edwards EA, Löffler FE.

Nat Chem Biol. 2018 Jan;14(1):8-14. doi: 10.1038/nchembio.2512. Epub 2017 Nov 6.

13.

Year-Round Shotgun Metagenomes Reveal Stable Microbial Communities in Agricultural Soils and Novel Ammonia Oxidizers Responding to Fertilization.

Orellana LH, Chee-Sanford JC, Sanford RA, Löffler FE, Konstantinidis KT.

Appl Environ Microbiol. 2018 Jan 2;84(2). pii: e01646-17. doi: 10.1128/AEM.01646-17. Print 2018 Jan 15.

14.

Resilience and recovery of Dehalococcoides mccartyi following low pH exposure.

Yang Y, Cápiro NL, Yan J, Marcet TF, Pennell KD, Löffler FE.

FEMS Microbiol Ecol. 2017 Dec 1;93(12). doi: 10.1093/femsec/fix130.

PMID:
29040515
15.

Mutualistic interaction between dichloromethane- and chloromethane-degrading bacteria in an anaerobic mixed culture.

Chen G, Kleindienst S, Griffiths DR, Mack EE, Seger ES, Löffler FE.

Environ Microbiol. 2017 Nov;19(11):4784-4796. doi: 10.1111/1462-2920.13945. Epub 2017 Oct 13.

PMID:
28967177
16.

Complete Genome Sequence of Dehalobacterium formicoaceticum Strain DMC, a Strictly Anaerobic Dichloromethane-Degrading Bacterium.

Chen G, Murdoch RW, Mack EE, Seger ES, Löffler FE.

Genome Announc. 2017 Sep 14;5(37). pii: e00897-17. doi: 10.1128/genomeA.00897-17.

17.

Grape pomace compost harbors organohalide-respiring Dehalogenimonas species with novel reductive dehalogenase genes.

Yang Y, Higgins SA, Yan J, Şimşir B, Chourey K, Iyer R, Hettich RL, Baldwin B, Ogles DM, Löffler FE.

ISME J. 2017 Dec;11(12):2767-2780. doi: 10.1038/ismej.2017.127. Epub 2017 Aug 15.

18.

Genomics and Ecology of Novel N2O-Reducing Microorganisms.

Hallin S, Philippot L, Löffler FE, Sanford RA, Jones CM.

Trends Microbiol. 2018 Jan;26(1):43-55. doi: 10.1016/j.tim.2017.07.003. Epub 2017 Aug 10. Review.

PMID:
28803698
19.

Community detection in sequence similarity networks based on attribute clustering.

Chowdhary J, Löffler FE, Smith JC.

PLoS One. 2017 Jul 24;12(7):e0178650. doi: 10.1371/journal.pone.0178650. eCollection 2017.

20.

Organohalide Respiration with Chlorinated Ethenes under Low pH Conditions.

Yang Y, Cápiro NL, Marcet TF, Yan J, Pennell KD, Löffler FE.

Environ Sci Technol. 2017 Aug 1;51(15):8579-8588. doi: 10.1021/acs.est.7b01510. Epub 2017 Jul 24.

PMID:
28665587
21.

Natural Attenuation in Streambed Sediment Receiving Chlorinated Solvents from Underlying Fracture Networks.

Şimşir B, Yan J, Im J, Graves D, Löffler FE.

Environ Sci Technol. 2017 May 2;51(9):4821-4830. doi: 10.1021/acs.est.6b05554. Epub 2017 Apr 11.

PMID:
28328216
22.

'Candidatus Dichloromethanomonas elyunquensis' gen. nov., sp. nov., a dichloromethane-degrading anaerobe of the Peptococcaceae family.

Kleindienst S, Higgins SA, Tsementzi D, Chen G, Konstantinidis KT, Mack EE, Löffler FE.

Syst Appl Microbiol. 2017 Apr;40(3):150-159. doi: 10.1016/j.syapm.2016.12.001. Epub 2016 Dec 21.

PMID:
28292625
23.

Refined experimental annotation reveals conserved corrinoid autotrophy in chloroform-respiring Dehalobacter isolates.

Wang PH, Tang S, Nemr K, Flick R, Yan J, Mahadevan R, Yakunin AF, Löffler FE, Edwards EA.

ISME J. 2017 Mar;11(3):626-640. doi: 10.1038/ismej.2016.158. Epub 2016 Nov 29.

24.

Fate of Bisphenol A in Terrestrial and Aquatic Environments.

Im J, Löffler FE.

Environ Sci Technol. 2016 Aug 16;50(16):8403-16. doi: 10.1021/acs.est.6b00877. Epub 2016 Aug 1. Review.

PMID:
27401879
25.

Simplified extraction of bisphenols from bacterial culture suspensions and solid matrices.

Im J, Yip D, Lee J, Löffler FE.

J Microbiol Methods. 2016 Jul;126:35-7. doi: 10.1016/j.mimet.2016.05.005. Epub 2016 May 11.

PMID:
27179438
26.

A Data Mining Approach to Predict In Situ Detoxification Potential of Chlorinated Ethenes.

Lee J, Im J, Kim U, Löffler FE.

Environ Sci Technol. 2016 May 17;50(10):5181-8. doi: 10.1021/acs.est.5b05090. Epub 2016 May 4.

PMID:
27116079
27.

Nitrous Oxide Reduction Kinetics Distinguish Bacteria Harboring Clade I NosZ from Those Harboring Clade II NosZ.

Yoon S, Nissen S, Park D, Sanford RA, Löffler FE.

Appl Environ Microbiol. 2016 Jun 13;82(13):3793-800. doi: 10.1128/AEM.00409-16. Print 2016 Jul 1.

28.

Detection and Diversity of Fungal Nitric Oxide Reductase Genes (p450nor) in Agricultural Soils.

Higgins SA, Welsh A, Orellana LH, Konstantinidis KT, Chee-Sanford JC, Sanford RA, Schadt CW, Löffler FE.

Appl Environ Microbiol. 2016 May 2;82(10):2919-2928. doi: 10.1128/AEM.00243-16. Print 2016 May 15.

29.

Draft Genome Sequence of a Strictly Anaerobic Dichloromethane-Degrading Bacterium.

Kleindienst S, Higgins SA, Tsementzi D, Konstantinidis KT, Mack EE, Löffler FE.

Genome Announc. 2016 Mar 3;4(2). pii: e00037-16. doi: 10.1128/genomeA.00037-16.

30.

Sister Dehalobacter Genomes Reveal Specialization in Organohalide Respiration and Recent Strain Differentiation Likely Driven by Chlorinated Substrates.

Tang S, Wang PH, Higgins SA, Löffler FE, Edwards EA.

Front Microbiol. 2016 Feb 12;7:100. doi: 10.3389/fmicb.2016.00100. eCollection 2016.

31.

The corrinoid cofactor of reductive dehalogenases affects dechlorination rates and extents in organohalide-respiring Dehalococcoides mccartyi.

Yan J, Şimşir B, Farmer AT, Bi M, Yang Y, Campagna SR, Löffler FE.

ISME J. 2016 May;10(5):1092-101. doi: 10.1038/ismej.2015.197. Epub 2015 Nov 10.

32.

Spatial and temporal dynamics of organohalide-respiring bacteria in a heterogeneous PCE-DNAPL source zone.

Cápiro NL, Löffler FE, Pennell KD.

J Contam Hydrol. 2015 Nov;182:78-90. doi: 10.1016/j.jconhyd.2015.08.007. Epub 2015 Aug 22.

PMID:
26348832
33.

Dehalococcoides mccartyi gen. nov., sp. nov., obligately organohalide-respiring anaerobic bacteria relevant to halogen cycling and bioremediation, belong to a novel bacterial class, Dehalococcoidia classis nov., order Dehalococcoidales ord. nov. and family Dehalococcoidaceae fam. nov., within the phylum Chloroflexi.

Löffler FE, Yan J, Ritalahti KM, Adrian L, Edwards EA, Konstantinidis KT, Müller JA, Fullerton H, Zinder SH, Spormann AM.

Int J Syst Evol Microbiol. 2015 Jun;65(Pt 6):2015. doi: 10.1099/ijs.0.000308. No abstract available.

PMID:
26184667
34.

Response to Comment on "Environmental Fate of the Next Generation Refrigerant 2,3,3,3-Tetrafluoropropene (HFO-1234yf)″.

Im J, Walshe-Langford GE, Moon JW, Löffler FE.

Environ Sci Technol. 2015 Jul 7;49(13):8265-6. doi: 10.1021/acs.est.5b01970. Epub 2015 Jun 11. No abstract available.

PMID:
26066073
35.

Identification of 4-Hydroxycumyl Alcohol As the Major MnO2-Mediated Bisphenol A Transformation Product and Evaluation of Its Environmental Fate.

Im J, Prevatte CW, Campagna SR, Löffler FE.

Environ Sci Technol. 2015 May 19;49(10):6214-21. doi: 10.1021/acs.est.5b00372. Epub 2015 May 6.

PMID:
25919646
36.

Nitrite Control over Dissimilatory Nitrate/Nitrite Reduction Pathways in Shewanella loihica Strain PV-4.

Yoon S, Sanford RA, Löffler FE.

Appl Environ Microbiol. 2015 May 15;81(10):3510-7. doi: 10.1128/AEM.00688-15. Epub 2015 Mar 13.

37.

Denitrification versus respiratory ammonification: environmental controls of two competing dissimilatory NO3(-)/NO2(-) reduction pathways in Shewanella loihica strain PV-4.

Yoon S, Cruz-García C, Sanford R, Ritalahti KM, Löffler FE.

ISME J. 2015 May;9(5):1093-104. doi: 10.1038/ismej.2014.201. Epub 2014 Oct 31.

38.

Environmental fate of the next generation refrigerant 2,3,3,3-tetrafluoropropene (HFO-1234yf).

Im J, Walshe-Langford GE, Moon JW, Löffler FE.

Environ Sci Technol. 2014 Nov 18;48(22):13181-7. doi: 10.1021/es5032147. Epub 2014 Oct 31.

PMID:
25329364
39.

4-methylphenol produced in freshwater sediment microcosms is not a bisphenol A metabolite.

Im J, Prevatte CW, Lee HG, Campagna SR, Löffler FE.

Chemosphere. 2014 Dec;117:521-6. doi: 10.1016/j.chemosphere.2014.09.008. Epub 2014 Sep 29.

PMID:
25268077
40.

Sphaerochaeta multiformis sp. nov., an anaerobic, psychrophilic bacterium isolated from subseafloor sediment, and emended description of the genus Sphaerochaeta.

Miyazaki M, Sakai S, Ritalahti KM, Saito Y, Yamanaka Y, Saito Y, Tame A, Uematsu K, Löffler FE, Takai K, Imachi H.

Int J Syst Evol Microbiol. 2014 Dec;64(Pt 12):4147-54. doi: 10.1099/ijs.0.068148-0. Epub 2014 Sep 23.

PMID:
25249566
41.

Distribution of organohalide-respiring bacteria between solid and aqueous phases.

Cápiro NL, Wang Y, Hatt JK, Lebrón CA, Pennell KD, Löffler FE.

Environ Sci Technol. 2014 Sep 16;48(18):10878-87. doi: 10.1021/es501320h. Epub 2014 Aug 25.

PMID:
25105899
42.

Detecting nitrous oxide reductase (NosZ) genes in soil metagenomes: method development and implications for the nitrogen cycle.

Orellana LH, Rodriguez-R LM, Higgins S, Chee-Sanford JC, Sanford RA, Ritalahti KM, Löffler FE, Konstantinidis KT.

MBio. 2014 Jun 3;5(3):e01193-14. doi: 10.1128/mBio.01193-14.

43.

Refined NrfA phylogeny improves PCR-based nrfA gene detection.

Welsh A, Chee-Sanford JC, Connor LM, Löffler FE, Sanford RA.

Appl Environ Microbiol. 2014 Apr;80(7):2110-9. doi: 10.1128/AEM.03443-13. Epub 2014 Jan 24.

44.

Bioaugmentation with distinct Dehalobacter strains achieves chloroform detoxification in microcosms.

Justicia-Leon SD, Higgins S, Mack EE, Griffiths DR, Tang S, Edwards EA, Löffler FE.

Environ Sci Technol. 2014;48(3):1851-8. doi: 10.1021/es403582f. Epub 2014 Jan 15.

PMID:
24392834
45.

Identification and environmental distribution of dcpA, which encodes the reductive dehalogenase catalyzing the dichloroelimination of 1,2-dichloropropane to propene in organohalide-respiring chloroflexi.

Padilla-Crespo E, Yan J, Swift C, Wagner DD, Chourey K, Hettich RL, Ritalahti KM, Löffler FE.

Appl Environ Microbiol. 2014 Feb;80(3):808-18. doi: 10.1128/AEM.02927-13. Epub 2013 Nov 15.

46.

Interference of ferric ions with ferrous iron quantification using the ferrozine assay.

Im J, Lee J, Löffler FE.

J Microbiol Methods. 2013 Dec;95(3):366-7. doi: 10.1016/j.mimet.2013.10.005. Epub 2013 Oct 16.

PMID:
24140574
47.

Design and application of an internal amplification control to improve Dehalococcoides mccartyi 16S rRNA gene enumeration by qPCR.

Hatt JK, Ritalahti KM, Ogles DM, Lebrón CA, Löffler FE.

Environ Sci Technol. 2013 Oct 1;47(19):11131-8. doi: 10.1021/es4019817. Epub 2013 Sep 20.

PMID:
24053159
48.

Environmental proteomics reveals early microbial community responses to biostimulation at a uranium- and nitrate-contaminated site.

Chourey K, Nissen S, Vishnivetskaya T, Shah M, Pfiffner S, Hettich RL, Löffler FE.

Proteomics. 2013 Oct;13(18-19):2921-30. doi: 10.1002/pmic.201300155. Epub 2013 Aug 22.

PMID:
23894087
49.

Microbially enhanced dissolution and reductive dechlorination of PCE by a mixed culture: model validation and sensitivity analysis.

Chen M, Abriola LM, Amos BK, Suchomel EJ, Pennell KD, Löffler FE, Christ JA.

J Contam Hydrol. 2013 Aug;151:117-30. doi: 10.1016/j.jconhyd.2013.05.005. Epub 2013 May 29.

PMID:
23774611
50.

Overview of organohalide-respiring bacteria and a proposal for a classification system for reductive dehalogenases.

Hug LA, Maphosa F, Leys D, Löffler FE, Smidt H, Edwards EA, Adrian L.

Philos Trans R Soc Lond B Biol Sci. 2013 Mar 11;368(1616):20120322. doi: 10.1098/rstb.2012.0322. Print 2013 Apr 19. Review.

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