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Items: 37

1.

De Novo Mutation in Genes Regulating Neural Stem Cell Fate in Human Congenital Hydrocephalus.

Furey CG, Choi J, Jin SC, Zeng X, Timberlake AT, Nelson-Williams C, Mansuri MS, Lu Q, Duran D, Panchagnula S, Allocco A, Karimy JK, Khanna A, Gaillard JR, DeSpenza T, Antwi P, Loring E, Butler WE, Smith ER, Warf BC, Strahle JM, Limbrick DD, Storm PB, Heuer G, Jackson EM, Iskandar BJ, Johnston JM, Tikhonova I, Castaldi C, López-Giráldez F, Bjornson RD, Knight JR, Bilguvar K, Mane S, Alper SL, Haider S, Guclu B, Bayri Y, Sahin Y, Apuzzo MLJ, Duncan CC, DiLuna ML, Günel M, Lifton RP, Kahle KT.

Neuron. 2018 Jul 25;99(2):302-314.e4. doi: 10.1016/j.neuron.2018.06.019. Epub 2018 Jul 5.

PMID:
29983323
2.

In utero nanoparticle delivery for site-specific genome editing.

Ricciardi AS, Bahal R, Farrelly JS, Quijano E, Bianchi AH, Luks VL, Putman R, López-Giráldez F, Coşkun S, Song E, Liu Y, Hsieh WC, Ly DH, Stitelman DH, Glazer PM, Saltzman WM.

Nat Commun. 2018 Jun 26;9(1):2481. doi: 10.1038/s41467-018-04894-2.

3.

Targeted protein unfolding uncovers a Golgi-specific transcriptional stress response.

Serebrenik YV, Hellerschmied D, Toure M, López-Giráldez F, Brookner D, Crews CM.

Mol Biol Cell. 2018 Jun 1;29(11):1284-1298. doi: 10.1091/mbc.E17-11-0693. Epub 2018 Apr 5.

4.

Interferon-γ converts human microvascular pericytes into negative regulators of alloimmunity through induction of indoleamine 2,3-dioxygenase 1.

Liu R, Merola J, Manes TD, Qin L, Tietjen GT, López-Giráldez F, Broecker V, Fang C, Xie C, Chen PM, Kirkiles-Smith NC, Jane-Wit D, Pober JS.

JCI Insight. 2018 Mar 8;3(5). pii: 97881. doi: 10.1172/jci.insight.97881. [Epub ahead of print]

5.

Identification of Intrinsic Axon Growth Modulators for Intact CNS Neurons after Injury.

Fink KL, López-Giráldez F, Kim IJ, Strittmatter SM, Cafferty WBJ.

Cell Rep. 2017 Mar 14;18(11):2687-2701. doi: 10.1016/j.celrep.2017.02.058.

6.

The Epstein-Barr Virus Immunoevasins BCRF1 and BPLF1 Are Expressed by a Mechanism Independent of the Canonical Late Pre-initiation Complex.

McKenzie J, Lopez-Giraldez F, Delecluse HJ, Walsh A, El-Guindy A.

PLoS Pathog. 2016 Nov 17;12(11):e1006008. doi: 10.1371/journal.ppat.1006008. eCollection 2016 Nov.

7.

In vivo correction of anaemia in β-thalassemic mice by γPNA-mediated gene editing with nanoparticle delivery.

Bahal R, Ali McNeer N, Quijano E, Liu Y, Sulkowski P, Turchick A, Lu YC, Bhunia DC, Manna A, Greiner DL, Brehm MA, Cheng CJ, López-Giráldez F, Ricciardi A, Beloor J, Krause DS, Kumar P, Gallagher PG, Braddock DT, Mark Saltzman W, Ly DH, Glazer PM.

Nat Commun. 2016 Oct 26;7:13304. doi: 10.1038/ncomms13304.

8.

De novo mutations in congenital heart disease with neurodevelopmental and other congenital anomalies.

Homsy J, Zaidi S, Shen Y, Ware JS, Samocha KE, Karczewski KJ, DePalma SR, McKean D, Wakimoto H, Gorham J, Jin SC, Deanfield J, Giardini A, Porter GA Jr, Kim R, Bilguvar K, López-Giráldez F, Tikhonova I, Mane S, Romano-Adesman A, Qi H, Vardarajan B, Ma L, Daly M, Roberts AE, Russell MW, Mital S, Newburger JW, Gaynor JW, Breitbart RE, Iossifov I, Ronemus M, Sanders SJ, Kaltman JR, Seidman JG, Brueckner M, Gelb BD, Goldmuntz E, Lifton RP, Seidman CE, Chung WK.

Science. 2015 Dec 4;350(6265):1262-6. doi: 10.1126/science.aac9396.

9.

Identification and functional characterization of natural human melanocortin 1 receptor mutant alleles in Pakistani population.

Shahzad M, Sires Campos J, Tariq N, Herraiz Serrano C, Yousaf R, Jiménez-Cervantes C, Yousaf S, Waryah YM, Dad HA, Blue EM, Sobreira N, López-Giráldez F; University of Washington Center for Mendelian Genomics, Kausar T, Ali M, Waryah AM, Riazuddin S, Shaikh RS, García-Borrón JC, Ahmed ZM.

Pigment Cell Melanoma Res. 2015 Nov;28(6):730-5. doi: 10.1111/pcmr.12400. Epub 2015 Sep 22.

10.

Microarray analysis of neonatal rat anteroventral periventricular transcriptomes identifies the proapoptotic Cugbp2 gene as sex-specific and regulated by estradiol.

Del Pino Sans J, Krishnan S, Aggison LK, Adams HL, Shrikant MM, López-Giráldez F, Petersen SL.

Neuroscience. 2015 Sep 10;303:312-22. doi: 10.1016/j.neuroscience.2015.07.008. Epub 2015 Jul 9.

PMID:
26166732
11.

The Genetic Basis of Mendelian Phenotypes: Discoveries, Challenges, and Opportunities.

Chong JX, Buckingham KJ, Jhangiani SN, Boehm C, Sobreira N, Smith JD, Harrell TM, McMillin MJ, Wiszniewski W, Gambin T, Coban Akdemir ZH, Doheny K, Scott AF, Avramopoulos D, Chakravarti A, Hoover-Fong J, Mathews D, Witmer PD, Ling H, Hetrick K, Watkins L, Patterson KE, Reinier F, Blue E, Muzny D, Kircher M, Bilguvar K, López-Giráldez F, Sutton VR, Tabor HK, Leal SM, Gunel M, Mane S, Gibbs RA, Boerwinkle E, Hamosh A, Shendure J, Lupski JR, Lifton RP, Valle D, Nickerson DA; Centers for Mendelian Genomics, Bamshad MJ.

Am J Hum Genet. 2015 Aug 6;97(2):199-215. doi: 10.1016/j.ajhg.2015.06.009. Epub 2015 Jul 9. Review.

12.

E2F8 as a Novel Therapeutic Target for Lung Cancer.

Park SA, Platt J, Lee JW, López-Giráldez F, Herbst RS, Koo JS.

J Natl Cancer Inst. 2015 Jun 18;107(9). pii: djv151. doi: 10.1093/jnci/djv151. Print 2015 Sep.

13.

Gene expression differences among three Neurospora species reveal genes required for sexual reproduction in Neurospora crassa.

Lehr NA, Wang Z, Li N, Hewitt DA, López-Giráldez F, Trail F, Townsend JP.

PLoS One. 2014 Oct 20;9(10):e110398. doi: 10.1371/journal.pone.0110398. eCollection 2014.

14.

Single-stranded γPNAs for in vivo site-specific genome editing via Watson-Crick recognition.

Bahal R, Quijano E, McNeer NA, Liu Y, Bhunia DC, Lopez-Giraldez F, Fields RJ, Saltzman WM, Ly DH, Glazer PM.

Curr Gene Ther. 2014;14(5):331-42.

15.

A locus encompassing the Epstein-Barr virus bglf4 kinase regulates expression of genes encoding viral structural proteins.

El-Guindy A, Lopez-Giraldez F, Delecluse HJ, McKenzie J, Miller G.

PLoS Pathog. 2014 Aug 28;10(8):e1004307. doi: 10.1371/journal.ppat.1004307. eCollection 2014 Aug.

16.

Global gene expression and focused knockout analysis reveals genes associated with fungal fruiting body development in Neurospora crassa.

Wang Z, Lopez-Giraldez F, Lehr N, Farré M, Common R, Trail F, Townsend JP.

Eukaryot Cell. 2014 Jan;13(1):154-69. doi: 10.1128/EC.00248-13. Epub 2013 Nov 15.

17.

Complete mitochondrial genomes of ancient canids suggest a European origin of domestic dogs.

Thalmann O, Shapiro B, Cui P, Schuenemann VJ, Sawyer SK, Greenfield DL, Germonpré MB, Sablin MV, López-Giráldez F, Domingo-Roura X, Napierala H, Uerpmann HP, Loponte DM, Acosta AA, Giemsch L, Schmitz RW, Worthington B, Buikstra JE, Druzhkova A, Graphodatsky AS, Ovodov ND, Wahlberg N, Freedman AH, Schweizer RM, Koepfli KP, Leonard JA, Meyer M, Krause J, Pääbo S, Green RE, Wayne RK.

Science. 2013 Nov 15;342(6160):871-4. doi: 10.1126/science.1243650.

18.

Phylogenetic and phylogenomic overview of the Polyporales.

Binder M, Justo A, Riley R, Salamov A, Lopez-Giraldez F, Sjökvist E, Copeland A, Foster B, Sun H, Larsson E, Larsson KH, Townsend J, Grigoriev IV, Hibbett DS.

Mycologia. 2013 Nov-Dec;105(6):1350-73. doi: 10.3852/13-003. Epub 2013 Aug 11.

PMID:
23935031
19.

Evaluating phylogenetic informativeness as a predictor of phylogenetic signal for metazoan, fungal, and mammalian phylogenomic data sets.

López-Giráldez F, Moeller AH, Townsend JP.

Biomed Res Int. 2013;2013:621604. doi: 10.1155/2013/621604. Epub 2013 Jun 26.

20.

Molecular chaperone Hsp110 rescues a vesicle transport defect produced by an ALS-associated mutant SOD1 protein in squid axoplasm.

Song Y, Nagy M, Ni W, Tyagi NK, Fenton WA, López-Giráldez F, Overton JD, Horwich AL, Brady ST.

Proc Natl Acad Sci U S A. 2013 Apr 2;110(14):5428-33. doi: 10.1073/pnas.1303279110. Epub 2013 Mar 18.

21.

Transcriptome analyses during fruiting body formation in Fusarium graminearum and Fusarium verticillioides reflect species life history and ecology.

Sikhakolli UR, López-Giráldez F, Li N, Common R, Townsend JP, Trail F.

Fungal Genet Biol. 2012 Aug;49(8):663-73. doi: 10.1016/j.fgb.2012.05.009. Epub 2012 Jun 15.

PMID:
22705880
22.

Sex-specific gene expression during asexual development of Neurospora crassa.

Wang Z, Kin K, López-Giráldez F, Johannesson H, Townsend JP.

Fungal Genet Biol. 2012 Jul;49(7):533-43. doi: 10.1016/j.fgb.2012.05.004. Epub 2012 May 22.

23.

RBE controls microRNA164 expression to effect floral organogenesis.

Huang T, López-Giráldez F, Townsend JP, Irish VF.

Development. 2012 Jun;139(12):2161-9. doi: 10.1242/dev.075069. Epub 2012 May 9.

24.

Assessing the role of tandem repeats in shaping the genomic architecture of great apes.

Farré M, Bosch M, López-Giráldez F, Ponsà M, Ruiz-Herrera A.

PLoS One. 2011;6(11):e27239. doi: 10.1371/journal.pone.0027239. Epub 2011 Nov 4.

25.

PhyDesign: an online application for profiling phylogenetic informativeness.

López-Giráldez F, Townsend JP.

BMC Evol Biol. 2011 May 31;11:152. doi: 10.1186/1471-2148-11-152.

26.

Tasting soil fungal diversity with earth tongues: phylogenetic test of SATé alignments for environmental ITS data.

Wang Z, Nilsson RH, Lopez-Giraldez F, Zhuang WY, Dai YC, Johnston PR, Townsend JP.

PLoS One. 2011 Apr 21;6(4):e19039. doi: 10.1371/journal.pone.0019039.

27.

Multi-targeted priming for genome-wide gene expression assays.

Adomas AB, Lopez-Giraldez F, Clark TA, Wang Z, Townsend JP.

BMC Genomics. 2010 Aug 17;11:477. doi: 10.1186/1471-2164-11-477.

28.

Optimal selection of gene and ingroup taxon sampling for resolving phylogenetic relationships.

Townsend JP, Lopez-Giraldez F.

Syst Biol. 2010 Jul;59(4):446-57. doi: 10.1093/sysbio/syq025. Epub 2010 May 19.

PMID:
20547780
29.

LOX: inferring Level Of eXpression from diverse methods of census sequencing.

Zhang Z, López-Giráldez F, Townsend JP.

Bioinformatics. 2010 Aug 1;26(15):1918-9. doi: 10.1093/bioinformatics/btq303. Epub 2010 Jun 10.

30.

The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits.

Schoch CL, Sung GH, López-Giráldez F, Townsend JP, Miadlikowska J, Hofstetter V, Robbertse B, Matheny PB, Kauff F, Wang Z, Gueidan C, Andrie RM, Trippe K, Ciufetti LM, Wynns A, Fraker E, Hodkinson BP, Bonito G, Groenewald JZ, Arzanlou M, de Hoog GS, Crous PW, Hewitt D, Pfister DH, Peterson K, Gryzenhout M, Wingfield MJ, Aptroot A, Suh SO, Blackwell M, Hillis DM, Griffith GW, Castlebury LA, Rossman AY, Lumbsch HT, Lücking R, Büdel B, Rauhut A, Diederich P, Ertz D, Geiser DM, Hosaka K, Inderbitzin P, Kohlmeyer J, Volkmann-Kohlmeyer B, Mostert L, O'Donnell K, Sipman H, Rogers JD, Shoemaker RA, Sugiyama J, Summerbell RC, Untereiner W, Johnston PR, Stenroos S, Zuccaro A, Dyer PS, Crittenden PD, Cole MS, Hansen K, Trappe JM, Yahr R, Lutzoni F, Spatafora JW.

Syst Biol. 2009 Apr;58(2):224-39. doi: 10.1093/sysbio/syp020. Epub 2009 Jun 4.

PMID:
20525580
31.

Measuring transcription factor-binding site turnover: a maximum likelihood approach using phylogenies.

Otto W, Stadler PF, López-Giraldéz F, Townsend JP, Lynch VJ, Wagner GP.

Genome Biol Evol. 2009 May 25;1:85-98. doi: 10.1093/gbe/evp010.

32.

The phylogenetic informativeness of nucleotide and amino acid sequences for reconstructing the vertebrate tree.

Townsend JP, López-Giráldez F, Friedman R.

J Mol Evol. 2008 Nov;67(5):437-47. doi: 10.1007/s00239-008-9142-0. Epub 2008 Aug 12.

PMID:
18696029
33.

RPS4Y gene family evolution in primates.

Andrés O, Kellermann T, López-Giráldez F, Rozas J, Domingo-Roura X, Bosch M.

BMC Evol Biol. 2008 May 13;8:142. doi: 10.1186/1471-2148-8-142.

34.

High incidence of nonslippage mechanisms generating variability and complexity in eurasian badger microsatellites.

López-Giráldez F, Marmi J, Domingo-Roura X.

J Hered. 2007 Sep-Oct;98(6):620-8. Epub 2007 Aug 28.

PMID:
17728273
35.

Analyses of carnivore microsatellites and their intimate association with tRNA-derived SINEs.

López-Giráldez F, Andrés O, Domingo-Roura X, Bosch M.

BMC Genomics. 2006 Oct 23;7:269.

36.

Mitochondrial DNA reveals a strong phylogeographic structure in the badger across Eurasia.

Marmi J, López-Giráldez F, Macdonald DW, Calafell F, Zholnerovskaya E, Domingo-Roura X.

Mol Ecol. 2006 Apr;15(4):1007-20.

PMID:
16599963
37.

Phylogenetic inference and comparative evolution of a complex microsatellite and its flanking regions in carnivores.

Domingo-Roura X, López-Giráldez F, Saeki M, Marmi J.

Genet Res. 2005 Jun;85(3):223-33.

PMID:
16174341

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