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Items: 16

1.

KORP: knowledge-based 6D potential for fast protein and loop modeling.

López-Blanco JR, Chacón P.

Bioinformatics. 2019 Sep 1;35(17):3013-3019. doi: 10.1093/bioinformatics/btz026.

PMID:
30649193
2.

The structural basis of flagellin detection by NAIP5: A strategy to limit pathogen immune evasion.

Tenthorey JL, Haloupek N, López-Blanco JR, Grob P, Adamson E, Hartenian E, Lind NA, Bourgeois NM, Chacón P, Nogales E, Vance RE.

Science. 2017 Nov 17;358(6365):888-893. doi: 10.1126/science.aao1140.

3.

FRODOCK 2.0: fast protein-protein docking server.

Ramírez-Aportela E, López-Blanco JR, Chacón P.

Bioinformatics. 2016 Aug 1;32(15):2386-8. doi: 10.1093/bioinformatics/btw141. Epub 2016 Mar 12.

PMID:
27153583
4.

RCD+: Fast loop modeling server.

López-Blanco JR, Canosa-Valls AJ, Li Y, Chacón P.

Nucleic Acids Res. 2016 Jul 8;44(W1):W395-400. doi: 10.1093/nar/gkw395. Epub 2016 May 5.

5.

Corrigendum: Structure of promoter-bound TFIID and model of human pre-initiation complex assembly.

Louder RK, He Y, López-Blanco JR, Fang J, Chacón P, Nogales E.

Nature. 2016 Aug 4;536(7614):112. doi: 10.1038/nature17984. Epub 2016 Apr 20. No abstract available.

PMID:
27096372
6.

Structure of promoter-bound TFIID and model of human pre-initiation complex assembly.

Louder RK, He Y, López-Blanco JR, Fang J, Chacón P, Nogales E.

Nature. 2016 Mar 31;531(7596):604-9. doi: 10.1038/nature17394. Epub 2016 Mar 23. Erratum in: Nature. 2016 Aug 4;536(7614):112.

7.

New generation of elastic network models.

López-Blanco JR, Chacón P.

Curr Opin Struct Biol. 2016 Apr;37:46-53. doi: 10.1016/j.sbi.2015.11.013. Epub 2015 Dec 21. Review.

PMID:
26716577
8.

Understanding nucleotide-regulated FtsZ filament dynamics and the monomer assembly switch with large-scale atomistic simulations.

Ramírez-Aportela E, López-Blanco JR, Andreu JM, Chacón P.

Biophys J. 2014 Nov 4;107(9):2164-76. doi: 10.1016/j.bpj.2014.09.033.

9.

iMODS: internal coordinates normal mode analysis server.

López-Blanco JR, Aliaga JI, Quintana-Ortí ES, Chacón P.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W271-6. doi: 10.1093/nar/gku339. Epub 2014 Apr 25.

10.

iMODFIT: efficient and robust flexible fitting based on vibrational analysis in internal coordinates.

Lopéz-Blanco JR, Chacón P.

J Struct Biol. 2013 Nov;184(2):261-70. doi: 10.1016/j.jsb.2013.08.010. Epub 2013 Aug 30.

PMID:
23999189
11.

Formation of an intricate helical bundle dictates the assembly of the 26S proteasome lid.

Estrin E, Lopez-Blanco JR, Chacón P, Martin A.

Structure. 2013 Sep 3;21(9):1624-35. doi: 10.1016/j.str.2013.06.023. Epub 2013 Aug 1.

12.

iMod: multipurpose normal mode analysis in internal coordinates.

Lopéz-Blanco JR, Garzón JI, Chacón P.

Bioinformatics. 2011 Oct 15;27(20):2843-50. doi: 10.1093/bioinformatics/btr497. Epub 2011 Aug 27.

PMID:
21873636
13.

Approaching Elastic Network Models to Molecular Dynamics Flexibility.

Orellana L, Rueda M, Ferrer-Costa C, Lopez-Blanco JR, Chacón P, Orozco M.

J Chem Theory Comput. 2010 Sep 14;6(9):2910-23. doi: 10.1021/ct100208e.

PMID:
26616090
14.

FRODOCK: a new approach for fast rotational protein-protein docking.

Garzon JI, Lopéz-Blanco JR, Pons C, Kovacs J, Abagyan R, Fernandez-Recio J, Chacon P.

Bioinformatics. 2009 Oct 1;25(19):2544-51. doi: 10.1093/bioinformatics/btp447. Epub 2009 Jul 20.

15.

Plasmid replication initiator RepB forms a hexamer reminiscent of ring helicases and has mobile nuclease domains.

Boer DR, Ruíz-Masó JA, López-Blanco JR, Blanco AG, Vives-Llàcer M, Chacón P, Usón I, Gomis-Rüth FX, Espinosa M, Llorca O, del Solar G, Coll M.

EMBO J. 2009 Jun 3;28(11):1666-78. doi: 10.1038/emboj.2009.125.

16.

Architecture of the pontin/reptin complex, essential in the assembly of several macromolecular complexes.

Torreira E, Jha S, López-Blanco JR, Arias-Palomo E, Chacón P, Cañas C, Ayora S, Dutta A, Llorca O.

Structure. 2008 Oct 8;16(10):1511-20. doi: 10.1016/j.str.2008.08.009.

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