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Items: 1 to 50 of 71

1.

Comparative genomics of chytrid fungi reveal insights into the obligate biotrophic and pathogenic lifestyle of Synchytrium endobioticum.

van de Vossenberg BTLH, Warris S, Nguyen HDT, van Gent-Pelzer MPE, Joly DL, van de Geest HC, Bonants PJM, Smith DS, Lévesque CA, van der Lee TAJ.

Sci Rep. 2019 Jun 17;9(1):8672. doi: 10.1038/s41598-019-45128-9.

2.

An Overview of Canadian Research Activities on Diseases Caused by Phytophthora ramorum: Results, Progress, and Challenges.

Shamoun SF, Rioux D, Callan B, James D, Hamelin RC, Bilodeau GJ, Elliott M, Lévesque CA, Becker E, McKenney D, Pedlar J, Bailey K, Brière SC, Niquidet K, Allen E.

Plant Dis. 2018 Jul;102(7):1218-1233. doi: 10.1094/PDIS-11-17-1730-FE. Epub 2018 Jun 7. Review.

PMID:
30673582
3.

Detection and Quantification of Pythium tracheiphilum in Soil by Multiplex Real-Time qPCR.

Van der Heyden H, Wallon T, Lévesque CA, Carisse O.

Plant Dis. 2019 Mar;103(3):475-483. doi: 10.1094/PDIS-03-18-0419-RE. Epub 2019 Jan 18.

PMID:
30657427
4.

Cluster oligonucleotide signatures for rapid identification by sequencing.

Zahariev M, Chen W, Visagie CM, Lévesque CA.

BMC Bioinformatics. 2018 Oct 29;19(1):395. doi: 10.1186/s12859-018-2363-3.

5.

Aquatic Bacterial Communities Associated With Land Use and Environmental Factors in Agricultural Landscapes Using a Metabarcoding Approach.

Chen W, Wilkes G, Khan IUH, Pintar KDM, Thomas JL, Lévesque CA, Chapados JT, Topp E, Lapen DR.

Front Microbiol. 2018 Oct 30;9:2301. doi: 10.3389/fmicb.2018.02301. eCollection 2018.

6.

Assessing Performance of Spore Samplers in Monitoring Aeromycobiota and Fungal Plant Pathogen Diversity in Canada.

Chen W, Hambleton S, Seifert KA, Carisse O, Diarra MS, Peters RD, Lowe C, Chapados JT, Lévesque CA.

Appl Environ Microbiol. 2018 Apr 16;84(9). pii: e02601-17. doi: 10.1128/AEM.02601-17. Print 2018 May 1.

7.

Re-classification of Clavibacter michiganensis subspecies on the basis of whole-genome and multi-locus sequence analyses.

Li X, Tambong J, Yuan KX, Chen W, Xu H, Lévesque CA, De Boer SH.

Int J Syst Evol Microbiol. 2018 Jan;68(1):234-240. doi: 10.1099/ijsem.0.002492. Epub 2017 Nov 21.

8.

Molecular phylogeny and taxonomy of Lagenidium-like oomycetes pathogenic to mammals.

Spies CFJ, Grooters AM, Lévesque CA, Rintoul TL, Redhead SA, Glockling SL, Chen CY, de Cock AWAM.

Fungal Biol. 2016 Aug;120(8):931-947. doi: 10.1016/j.funbio.2016.05.005. Epub 2016 May 20.

PMID:
27521626
9.

Identification of the Dominant Genotypes of Phytophthora infestans in Canada Using Real-Time PCR with ASO-PCR Assays.

Gagnon MC, Kawchuk L, Tremblay DM, Carisse O, Danies G, Fry WE, Lévesque CA, Bilodeau GJ.

Plant Dis. 2016 Jul;100(7):1482-1491. doi: 10.1094/PDIS-07-15-0763-RE. Epub 2016 Mar 7.

PMID:
30686184
10.

Development of Polymorphic Microsatellite Loci for Potato Wart from Next-Generation Sequence Data.

Gagnon MC, van der Lee TA, Bonants PJ, Smith DS, Li X, Lévesque CA, Bilodeau GJ.

Phytopathology. 2016 Jun;106(6):636-44. doi: 10.1094/PHYTO-12-15-0317-R. Epub 2016 Apr 8.

11.

Fungal Planet description sheets: 371-399.

Crous PW, Wingfield MJ, Le Roux JJ, Richardson DM, Strasberg D, Shivas RG, Alvarado P, Edwards J, Moreno G, Sharma R, Sonawane MS, Tan YP, Altés A, Barasubiye T, Barnes CW, Blanchette RA, Boertmann D, Bogo A, Carlavilla JR, Cheewangkoon R, Daniel R, de Beer ZW, de Jesús Yáñez-Morales M, Duong TA, Fernández-Vicente J, Geering AD, Guest DI, Held BW, Heykoop M, Hubka V, Ismail AM, Kajale SC, Khemmuk W, Kolařík M, Kurli R, Lebeuf R, Lévesque CA, Lombard L, Magista D, Manjón JL, Marincowitz S, Mohedano JM, Nováková A, Oberlies NH, Otto EC, Paguigan ND, Pascoe IG, Pérez-Butrón JL, Perrone G, Rahi P, Raja HA, Rintoul T, Sanhueza RM, Scarlett K, Shouche YS, Shuttleworth LA, Taylor PW, Thorn RG, Vawdrey LL, Solano-Vidal R, Voitk A, Wong PT, Wood AR, Zamora JC, Groenewald JZ.

Persoonia. 2015 Dec;35:264-327. doi: 10.3767/003158515X690269. Epub 2015 Dec 4.

12.

One fungus, which genes? Development and assessment of universal primers for potential secondary fungal DNA barcodes.

Stielow JB, Lévesque CA, Seifert KA, Meyer W, Iriny L, Smits D, Renfurm R, Verkley GJ, Groenewald M, Chaduli D, Lomascolo A, Welti S, Lesage-Meessen L, Favel A, Al-Hatmi AM, Damm U, Yilmaz N, Houbraken J, Lombard L, Quaedvlieg W, Binder M, Vaas LA, Vu D, Yurkov A, Begerow D, Roehl O, Guerreiro M, Fonseca A, Samerpitak K, van Diepeningen AD, Dolatabadi S, Moreno LF, Casaregola S, Mallet S, Jacques N, Roscini L, Egidi E, Bizet C, Garcia-Hermoso D, Martín MP, Deng S, Groenewald JZ, Boekhout T, de Beer ZW, Barnes I, Duong TA, Wingfield MJ, de Hoog GS, Crous PW, Lewis CT, Hambleton S, Moussa TA, Al-Zahrani HS, Almaghrabi OA, Louis-Seize G, Assabgui R, McCormick W, Omer G, Dukik K, Cardinali G, Eberhardt U, de Vries M, Robert V.

Persoonia. 2015 Dec;35:242-63. doi: 10.3767/003158515X689135. Epub 2015 Aug 28.

13.

Evaluation of two novel barcodes for species recognition of opportunistic pathogens in Fusarium.

Al-Hatmi AM, Van Den Ende AH, Stielow JB, Van Diepeningen AD, Seifert KA, McCormick W, Assabgui R, Gräfenhan T, De Hoog GS, Levesque CA.

Fungal Biol. 2016 Feb;120(2):231-45. doi: 10.1016/j.funbio.2015.08.006. Epub 2015 Aug 13.

PMID:
26781379
14.

Draft Genome Sequence of Alternaria alternata ATCC 34957.

Nguyen HD, Lewis CT, Lévesque CA, Gräfenhan T.

Genome Announc. 2016 Jan 14;4(1). pii: e01554-15. doi: 10.1128/genomeA.01554-15.

15.

Identification, characterization and description of Arcobacter faecis sp. nov., isolated from a human waste septic tank.

Whiteduck-Léveillée K, Whiteduck-Léveillée J, Cloutier M, Tambong JT, Xu R, Topp E, Arts MT, Chao J, Adam Z, Lévesque CA, Lapen DR, Villemur R, Khan IU.

Syst Appl Microbiol. 2016 Mar;39(2):93-9. doi: 10.1016/j.syapm.2015.12.002. Epub 2015 Dec 13.

PMID:
26723853
16.

Infection Efficiency of Four Phytophthora infestans Clonal Lineages and DNA-Based Quantification of Sporangia.

Fall ML, Tremblay DM, Gobeil-Richard M, Couillard J, Rocheleau H, Van der Heyden H, Lévesque CA, Beaulieu C, Carisse O.

PLoS One. 2015 Aug 24;10(8):e0136312. doi: 10.1371/journal.pone.0136312. eCollection 2015.

17.

Draft Genome Sequences of Ralstonia solanacearum Race 3 Biovar 2 Strains with Different Temperature Adaptations.

Yuan KX, Cullis J, Lévesque CA, Tambong J, Chen W, Lewis CT, De Boer SH, Li XS.

Genome Announc. 2015 Aug 13;3(4). pii: e00815-15. doi: 10.1128/genomeA.00815-15.

18.

Phytopythium: molecular phylogeny and systematics.

de Cock AW, Lodhi AM, Rintoul TL, Bala K, Robideau GP, Abad ZG, Coffey MD, Shahzad S, Lévesque CA.

Persoonia. 2015 Jun;34:25-39. doi: 10.3767/003158515X685382. Epub 2014 Oct 30.

19.

Draft Genome Sequences for Canadian Isolates of Pectobacterium carotovorum subsp. brasiliense with Weak Virulence on Potato.

Li XS, Yuan KX, Cullis J, Lévesque CA, Chen W, Lewis CT, De Boer SH.

Genome Announc. 2015 Apr 9;3(2). pii: e00240-15. doi: 10.1128/genomeA.00240-15.

20.

Draft Genome Sequence of Pantoea ananatis Strain LMG 2665T, a Bacterial Pathogen of Pineapple Fruitlets.

Adam Z, Tambong JT, Lewis CT, Lévesque CA, Chen W, Bromfield ES, Khan IU, Xu R.

Genome Announc. 2014 May 22;2(3). pii: e00489-14. doi: 10.1128/genomeA.00489-14.

21.

Draft genome sequences of three arcobacter strains of pig and dairy cattle manure origin.

Adam Z, Whiteduck-Leveillee K, Cloutier M, Tambong JT, Chen W, Lewis CT, Lévesque CA, Topp E, Lapen DR, Talbot G, Khan IU.

Genome Announc. 2014 May 15;2(3). pii: e00377-14. doi: 10.1128/genomeA.00377-14.

22.

Draft Genome Sequence of Pectobacterium wasabiae Strain CFIA1002.

Yuan KX, Adam Z, Tambong J, Lévesque CA, Chen W, Lewis CT, De Boer SH, Li XS.

Genome Announc. 2014 May 15;2(3). pii: e00214-14. doi: 10.1128/genomeA.00214-14.

23.

Draft genome sequences of two arcobacter strains isolated from human feces.

Adam Z, Whiteduck-Léveillée K, Cloutier M, Chen W, Lewis CT, Lévesque CA, Topp E, Lapen DR, Tambong JT, Talbot G, Khan IU.

Genome Announc. 2014 Apr 3;2(2). pii: e00113-14. doi: 10.1128/genomeA.00113-14.

24.

Draft Genome Sequence of Arcobacter cibarius Strain LMG21996T, Isolated from Broiler Carcasses.

Adam Z, Whiteduck-Leveillee K, Cloutier M, Chen W, Lewis CT, Lévesque CA, Topp E, Lapen DR, Tambong JT, Talbot G, Khan IU.

Genome Announc. 2014 Feb 20;2(1). pii: e00034-14. doi: 10.1128/genomeA.00034-14.

25.

Draft Genome Sequence of Pseudomonas sp. Strain 2-92, a Biological Control Strain Isolated from a Field Plot Under Long-Term Mineral Fertilization.

Adam Z, Tambong JT, Chen Q, Lewis CT, Lévesque CA, Xu R.

Genome Announc. 2014 Jan 9;2(1). pii: e01121-13. doi: 10.1128/genomeA.01121-13.

26.

Phylogeny of the genus Synchytrium and the development of TaqMan PCR assay for sensitive detection of Synchytrium endobioticum in soil.

Smith DS, Rocheleau H, Chapados JT, Abbott C, Ribero S, Redhead SA, Lévesque CA, De Boer SH.

Phytopathology. 2014 Apr;104(4):422-32. doi: 10.1094/PHYTO-05-13-0144-R.

27.

Comparative genomics reveals insight into virulence strategies of plant pathogenic oomycetes.

Adhikari BN, Hamilton JP, Zerillo MM, Tisserat N, Lévesque CA, Buell CR.

PLoS One. 2013 Oct 4;8(10):e75072. doi: 10.1371/journal.pone.0075072. eCollection 2013.

28.

Carbohydrate-active enzymes in pythium and their role in plant cell wall and storage polysaccharide degradation.

Zerillo MM, Adhikari BN, Hamilton JP, Buell CR, Lévesque CA, Tisserat N.

PLoS One. 2013 Sep 12;8(9):e72572. doi: 10.1371/journal.pone.0072572. eCollection 2013.

29.

Molecular Detection and Quantification of Pythium Species: Evolving Taxonomy, New Tools, and Challenges.

Schroeder KL, Martin FN, de Cock AWAM, Lévesque CA, Spies CFJ, Okubara PA, Paulitz TC.

Plant Dis. 2013 Jan;97(1):4-20. doi: 10.1094/PDIS-03-12-0243-FE.

PMID:
30722255
30.

Membrane-based oligonucleotide array developed from multiple markers for the detection of many Phytophthora species.

Chen W, Djama ZR, Coffey MD, Martin FN, Bilodeau GJ, Radmer L, Denton G, Lévesque CA.

Phytopathology. 2013 Jan;103(1):43-54. doi: 10.1094/PHYTO-04-12-0092-R.

31.

Molecular techniques for pathogen identification and fungus detection in the environment.

Tsui CK, Woodhall J, Chen W, Lévesque CA, Lau A, Schoen CD, Baschien C, Najafzadeh MJ, de Hoog GS.

IMA Fungus. 2011 Dec;2(2):177-89. doi: 10.5598/imafungus.2011.02.02.09. Epub 2011 Nov 18.

32.

The amsterdam declaration on fungal nomenclature.

Hawksworth DL, Crous PW, Redhead SA, Reynolds DR, Samson RA, Seifert KA, Taylor JW, Wingfield MJ, Abaci O, Aime C, Asan A, Bai FY, de Beer ZW, Begerow D, Berikten D, Boekhout T, Buchanan PK, Burgess T, Buzina W, Cai L, Cannon PF, Crane JL, Damm U, Daniel HM, van Diepeningen AD, Druzhinina I, Dyer PS, Eberhardt U, Fell JW, Frisvad JC, Geiser DM, Geml J, Glienke C, Gräfenhan T, Groenewald JZ, Groenewald M, de Gruyter J, Guého-Kellermann E, Guo LD, Hibbett DS, Hong SB, de Hoog GS, Houbraken J, Huhndorf SM, Hyde KD, Ismail A, Johnston PR, Kadaifciler DG, Kirk PM, Kõljalg U, Kurtzman CP, Lagneau PE, Lévesque CA, Liu X, Lombard L, Meyer W, Miller A, Minter DW, Najafzadeh MJ, Norvell L, Ozerskaya SM, Oziç R, Pennycook SR, Peterson SW, Pettersson OV, Quaedvlieg W, Robert VA, Ruibal C, Schnürer J, Schroers HJ, Shivas R, Slippers B, Spierenburg H, Takashima M, Taşkın E, Thines M, Thrane U, Uztan AH, van Raak M, Varga J, Vasco A, Verkley G, Videira SI, de Vries RP, Weir BS, Yilmaz N, Yurkov A, Zhang N.

IMA Fungus. 2011 Jun;2(1):105-12. doi: 10.5598/imafungus.2011.02.01.14. Epub 2011 Jun 7.

33.

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi.

Schoch CL, Seifert KA, Huhndorf S, Robert V, Spouge JL, Levesque CA, Chen W; Fungal Barcoding Consortium; Fungal Barcoding Consortium Author List.

Proc Natl Acad Sci U S A. 2012 Apr 17;109(16):6241-6. doi: 10.1073/pnas.1117018109. Epub 2012 Mar 27.

34.

Multigene phylogenetic analyses to delimit new species in fungal plant pathogens.

Rintoul TL, Eggertson QA, Lévesque CA.

Methods Mol Biol. 2012;835:549-69. doi: 10.1007/978-1-61779-501-5_34.

PMID:
22183677
35.

The Comprehensive Phytopathogen Genomics Resource: a web-based resource for data-mining plant pathogen genomes.

Hamilton JP, Neeno-Eckwall EC, Adhikari BN, Perna NT, Tisserat N, Leach JE, Lévesque CA, Buell CR.

Database (Oxford). 2011 Nov 26;2011:bar053. doi: 10.1093/database/bar053. Print 2011.

36.

DNA barcoding of oomycetes with cytochrome c oxidase subunit I and internal transcribed spacer.

Robideau GP, De Cock AW, Coffey MD, Voglmayr H, Brouwer H, Bala K, Chitty DW, Désaulniers N, Eggertson QA, Gachon CM, Hu CH, Küpper FC, Rintoul TL, Sarhan E, Verstappen EC, Zhang Y, Bonants PJ, Ristaino JB, Lévesque CA.

Mol Ecol Resour. 2011 Nov;11(6):1002-11. doi: 10.1111/j.1755-0998.2011.03041.x. Epub 2011 Jun 20.

37.

Taxonomy, DNA barcoding and phylogeny of three new species of Pythium from Canada.

Bala K, Robideau GP, Désaulniers N, de Cock AW, Lévesque CA.

Persoonia. 2010 Dec;25:22-31. doi: 10.3767/003158510X524754. Epub 2010 Jul 30.

38.

Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire.

Lévesque CA, Brouwer H, Cano L, Hamilton JP, Holt C, Huitema E, Raffaele S, Robideau GP, Thines M, Win J, Zerillo MM, Beakes GW, Boore JL, Busam D, Dumas B, Ferriera S, Fuerstenberg SI, Gachon CM, Gaulin E, Govers F, Grenville-Briggs L, Horner N, Hostetler J, Jiang RH, Johnson J, Krajaejun T, Lin H, Meijer HJ, Moore B, Morris P, Phuntmart V, Puiu D, Shetty J, Stajich JE, Tripathy S, Wawra S, van West P, Whitty BR, Coutinho PM, Henrissat B, Martin F, Thomas PD, Tyler BM, De Vries RP, Kamoun S, Yandell M, Tisserat N, Buell CR.

Genome Biol. 2010;11(7):R73. doi: 10.1186/gb-2010-11-7-r73. Epub 2010 Jul 13.

39.

The promise and pitfalls of sequence-based identification of plant-pathogenic fungi and oomycetes.

Kang S, Mansfield MA, Park B, Geiser DM, Ivors KL, Coffey MD, Grünwald NJ, Martin FN, Lévesque CA, Blair JE.

Phytopathology. 2010 Aug;100(8):732-7. doi: 10.1094/PHYTO-100-8-0732. Review.

40.

Development of a specific TaqMan real-time PCR assay for quantification of Fusarium graminearum clade 7 and comparison of fungal biomass determined by PCR with deoxynivalenol content in wheat and barley.

Demeke T, Gräfenhan T, Clear RM, Phan A, Ratnayaka I, Chapados J, Patrick SK, Gaba D, Lévesque CA, Seifert KA.

Int J Food Microbiol. 2010 Jun 30;141(1-2):45-50. doi: 10.1016/j.ijfoodmicro.2010.04.020. Epub 2010 Apr 28.

PMID:
20483187
41.

Development of a TaqMan real-time PCR assay for quantification of airborne conidia of Botrytis squamosa and management of botrytis leaf blight of onion.

Carisse O, Tremblay DM, Lévesque CA, Gindro K, Ward P, Houde A.

Phytopathology. 2009 Nov;99(11):1273-80. doi: 10.1094/PHYTO-99-11-1273.

42.

Two new species of Pythium, P. senticosum and P. takayamanum,isolated from cool-temperate forest soil in Japan.

Senda M, Kageyama K, Suga H, Lévesque CA.

Mycologia. 2009 Jul-Aug;101(4):439-48.

PMID:
19623925
43.

Influence of Pythium oligandrum biocontrol on fungal and oomycete population dynamics in the rhizosphere.

Vallance J, Le Floch G, Déniel F, Barbier G, Lévesque CA, Rey P.

Appl Environ Microbiol. 2009 Jul;75(14):4790-800. doi: 10.1128/AEM.02643-08. Epub 2009 May 15.

44.

A high density COX1 barcode oligonucleotide array for identification and detection of species of Penicillium subgenus Penicillium.

Chen W, Seifert KA, Lévesque CA.

Mol Ecol Resour. 2009 May;9 Suppl s1:114-29. doi: 10.1111/j.1755-0998.2009.02638.x.

PMID:
21564971
45.

Efficient algorithms for the discovery of DNA oligonucleotide barcodes from sequence databases.

Zahariev M, Dahl V, Chen W, Lévesque CA.

Mol Ecol Resour. 2009 May;9 Suppl s1:58-64. doi: 10.1111/j.1755-0998.2009.02651.x.

PMID:
21564965
46.

Identification of some oomycetes by reverse dot blot hybridization.

Lévesque CA, Harlton CE, de Cock AW.

Phytopathology. 1998 Mar;88(3):213-22. doi: 10.1094/PHYTO.1998.88.3.213.

47.

An oligonucleotide array for the identification and differentiation of bacteria pathogenic on potato.

Fessehaie A, De Boer SH, Lévesque CA.

Phytopathology. 2003 Mar;93(3):262-9. doi: 10.1094/PHYTO.2003.93.3.262.

48.

Molecular Detection of Phytophthora ramorum by Real-Time Polymerase Chain Reaction Using TaqMan, SYBR Green, and Molecular Beacons.

Bilodeau GJ, Lévesque CA, de Cock AW, Duchaine C, Brière S, Uribe P, Martin FN, Hamelin RC.

Phytopathology. 2007 May;97(5):632-42. doi: 10.1094/PHYTO-97-5-0632.

49.

Identification and Quantification of Pathogenic Pythium spp. from Soils in Eastern Washington Using Real-Time Polymerase Chain Reaction.

Schroeder KL, Okubara PA, Tambong JT, Lévesque CA, Paulitz TC.

Phytopathology. 2006 Jun;96(6):637-47. doi: 10.1094/PHYTO-96-0637.

50.

Pythium solare sp. nov., a new pathogen of green beans in Spain.

de Cock AW, Lévesque CA, Melero-Vara JM, Serrano Y, Guirado ML, Gómez J.

Mycol Res. 2008 Sep;112(Pt 9):1115-21. doi: 10.1016/j.mycres.2008.03.005. Epub 2008 Apr 8.

PMID:
18703326

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