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Items: 1 to 50 of 432

1.

Author Correction: Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth's biomes.

Roux S, Krupovic M, Daly RA, Borges AL, Nayfach S, Schulz F, Sharrar A, Matheus Carnevali PB, Cheng JF, Ivanova NN, Bondy-Denomy J, Wrighton KC, Woyke T, Visel A, Kyrpides NC, Eloe-Fadrosh EA.

Nat Microbiol. 2020 Mar;5(3):527. doi: 10.1038/s41564-020-0681-5.

2.

Giant virus diversity and host interactions through global metagenomics.

Schulz F, Roux S, Paez-Espino D, Jungbluth S, Walsh DA, Denef VJ, McMahon KD, Konstantinidis KT, Eloe-Fadrosh EA, Kyrpides NC, Woyke T.

Nature. 2020 Feb;578(7795):432-436. doi: 10.1038/s41586-020-1957-x. Epub 2020 Jan 22.

PMID:
31968354
3.

Metatranscriptomic Sequencing of a Cyanobacterial Soil-Surface Consortium with and without a Diverse Underlying Soil Microbiome.

Bell TH, Trexler RV, Peng X, Huntemann M, Clum A, Foster B, Foster B, Roux S, Palaniappan K, Varghese N, Mukherjee S, Reddy TBK, Daum C, Copeland A, Ivanova NN, Kyrpides NC, Pennacchio C, Eloe-Fadrosh EA, Bruns MA.

Microbiol Resour Announc. 2020 Jan 2;9(1). pii: e01361-19. doi: 10.1128/MRA.01361-19.

4.

Establishment of computational biology in Greece and Cyprus: Past, present, and future.

Chasapi A, Aivaliotis M, Angelis L, Chanalaris A, Iliopoulos I, Kappas I, Karapiperis C, Kyrpides NC, Pafilis E, Panteris E, Topalis P, Tsiamis G, Vizirianakis IS, Vlassi M, Promponas VJ, Ouzounis CA.

PLoS Comput Biol. 2019 Dec 19;15(12):e1007532. doi: 10.1371/journal.pcbi.1007532. eCollection 2019 Dec. Review. No abstract available.

5.

Genome analysis of the marine bacterium Kiloniella laminariae and first insights into comparative genomics with related Kiloniella species.

Wiese J, Imhoff JF, Horn H, Borchert E, Kyrpides NC, Göker M, Klenk HP, Woyke T, Hentschel U.

Arch Microbiol. 2019 Dec 16. doi: 10.1007/s00203-019-01791-0. [Epub ahead of print]

PMID:
31844948
6.

Diversity, evolution, and classification of virophages uncovered through global metagenomics.

Paez-Espino D, Zhou J, Roux S, Nayfach S, Pavlopoulos GA, Schulz F, McMahon KD, Walsh D, Woyke T, Ivanova NN, Eloe-Fadrosh EA, Tringe SG, Kyrpides NC.

Microbiome. 2019 Dec 10;7(1):157. doi: 10.1186/s40168-019-0768-5.

7.

Improved Draft Genome Sequence of Microbacterium sp. Strain LKL04, a Bacterial Endophyte Associated with Switchgrass Plants.

Sahib MR, Yang P, Bokros N, Shapiro N, Woyke T, Kyrpides NC, Xia Y, DeBolt S.

Microbiol Resour Announc. 2019 Nov 7;8(45). pii: e00927-19. doi: 10.1128/MRA.00927-19.

8.

IMG-ABC v.5.0: an update to the IMG/Atlas of Biosynthetic Gene Clusters Knowledgebase.

Palaniappan K, Chen IA, Chu K, Ratner A, Seshadri R, Kyrpides NC, Ivanova NN, Mouncey NJ.

Nucleic Acids Res. 2020 Jan 8;48(D1):D422-D430. doi: 10.1093/nar/gkz932.

PMID:
31665416
9.

Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials.

Högfors-Rönnholm E, Lopez-Fernandez M, Christel S, Brambilla D, Huntemann M, Clum A, Foster B, Foster B, Roux S, Palaniappan K, Varghese N, Mukherjee S, Reddy TBK, Daum C, Copeland A, Chen IA, Ivanova NN, Kyrpides NC, Harmon-Smith M, Eloe-Fadrosh EA, Lundin D, Engblom S, Dopson M.

Sci Data. 2019 Oct 16;6(1):207. doi: 10.1038/s41597-019-0222-3.

10.

Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes.

García-López M, Meier-Kolthoff JP, Tindall BJ, Gronow S, Woyke T, Kyrpides NC, Hahnke RL, Göker M.

Front Microbiol. 2019 Sep 23;10:2083. doi: 10.3389/fmicb.2019.02083. eCollection 2019.

11.

Large-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes.

Sberro H, Fremin BJ, Zlitni S, Edfors F, Greenfield N, Snyder MP, Pavlopoulos GA, Kyrpides NC, Bhatt AS.

Cell. 2019 Aug 22;178(5):1245-1259.e14. doi: 10.1016/j.cell.2019.07.016. Epub 2019 Aug 8.

PMID:
31402174
12.

Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot.

Camargo AP, de Souza RSC, de Britto Costa P, Gerhardt IR, Dante RA, Teodoro GS, Abrahão A, Lambers H, Carazzolle MF, Huntemann M, Clum A, Foster B, Foster B, Roux S, Palaniappan K, Varghese N, Mukherjee S, Reddy TBK, Daum C, Copeland A, Chen IA, Ivanova NN, Kyrpides NC, Pennacchio C, Eloe-Fadrosh EA, Arruda P, Oliveira RS.

Sci Data. 2019 Jul 31;6(1):140. doi: 10.1038/s41597-019-0141-3.

13.

Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth's biomes.

Roux S, Krupovic M, Daly RA, Borges AL, Nayfach S, Schulz F, Sharrar A, Matheus Carnevali PB, Cheng JF, Ivanova NN, Bondy-Denomy J, Wrighton KC, Woyke T, Visel A, Kyrpides NC, Eloe-Fadrosh EA.

Nat Microbiol. 2019 Nov;4(11):1895-1906. doi: 10.1038/s41564-019-0510-x. Epub 2019 Jul 22. Erratum in: Nat Microbiol. 2020 Mar;5(3):527.

14.

Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom.

Nowinski B, Smith CB, Thomas CM, Esson K, Marin R 3rd, Preston CM, Birch JM, Scholin CA, Huntemann M, Clum A, Foster B, Foster B, Roux S, Palaniappan K, Varghese N, Mukherjee S, Reddy TBK, Daum C, Copeland A, Chen IA, Ivanova NN, Kyrpides NC, Glavina Del Rio T, Whitman WB, Kiene RP, Eloe-Fadrosh EA, Moran MA.

Sci Data. 2019 Jul 22;6(1):129. doi: 10.1038/s41597-019-0132-4.

15.

Sulfate-Reducing Bacteria That Produce Exopolymers Thrive in the Calcifying Zone of a Hypersaline Cyanobacterial Mat.

Spring S, Sorokin DY, Verbarg S, Rohde M, Woyke T, Kyrpides NC.

Front Microbiol. 2019 Apr 24;10:862. doi: 10.3389/fmicb.2019.00862. eCollection 2019.

16.

Consent insufficient for data release-Response.

Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, Hallam SJ, Hugenholtz P, Ioannidis JPA, Jansson JK, Kim JF, Klenk HP, Klotz MG, Knight R, Konstantinidis KT, Kyrpides NC, Mason CE, McHardy AC, Meyer F, Ouzounis CA, Patrinos AAN, Podar M, Pollard KS, Ravel J, Muñoz AR, Roberts RJ, Rosselló-Móra R, Sansone SA, Schloss PD, Schriml LM, Setubal JC, Sorek R, Stevens RL, Tiedje JM, Turjanski A, Tyson GW, Ussery DW, Weinstock GM, White O, Whitman WB, Xenarios I.

Science. 2019 May 3;364(6439):446. doi: 10.1126/science.aax7509. No abstract available.

PMID:
31048484
17.

Complete Genome Sequence of Serratia quinivorans Strain 124R, a Facultative Anaerobe Isolated on Organosolv Lignin as a Sole Carbon Source.

Chaput G, Ford J, DeDiego L, Narayanan A, Tam WY, Whalen M, Huntemann M, Clum A, Spunde A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Chen IM, Stamatis D, Reddy TBK, O'Malley R, Daum C, Shapiro N, Ivanova N, Kyrpides NC, Woyke T, Glavina Del Rio T, DeAngelis K.

Microbiol Resour Announc. 2019 May 2;8(18). pii: e00409-19. doi: 10.1128/MRA.00409-19.

18.

Genome-informed Bradyrhizobium taxonomy: where to from here?

Avontuur JR, Palmer M, Beukes CW, Chan WY, Coetzee MPA, Blom J, Stępkowski T, Kyrpides NC, Woyke T, Shapiro N, Whitman WB, Venter SN, Steenkamp ET.

Syst Appl Microbiol. 2019 Jul;42(4):427-439. doi: 10.1016/j.syapm.2019.03.006. Epub 2019 Apr 4.

PMID:
31031014
19.

Improved Draft Genome Sequence of Pseudomonas poae A2-S9, a Strain with Plant Growth-Promoting Activity.

Xia Y, DeBolt S, Ma Q, McDermaid A, Wang C, Shapiro N, Woyke T, Kyrpides NC.

Microbiol Resour Announc. 2019 Apr 11;8(15). pii: e00275-19. doi: 10.1128/MRA.00275-19.

20.

Improved Draft Genome Sequence of Bacillus sp. Strain YF23, Which Has Plant Growth-Promoting Activity.

Xia Y, DeBolt S, Ma Q, McDermaid A, Wang C, Shapiro N, Woyke T, Kyrpides NC.

Microbiol Resour Announc. 2019 Apr 11;8(15). pii: e00099-19. doi: 10.1128/MRA.00099-19.

21.

New insights from uncultivated genomes of the global human gut microbiome.

Nayfach S, Shi ZJ, Seshadri R, Pollard KS, Kyrpides NC.

Nature. 2019 Apr;568(7753):505-510. doi: 10.1038/s41586-019-1058-x. Epub 2019 Mar 13.

22.

Contrasting Pathways for Anaerobic Methane Oxidation in Gulf of Mexico Cold Seep Sediments.

Vigneron A, Alsop EB, Cruaud P, Philibert G, King B, Baksmaty L, Lavallee D, Lomans BP, Eloe-Fadrosh E, Kyrpides NC, Head IM, Tsesmetzis N.

mSystems. 2019 Feb 26;4(1). pii: e00091-18. doi: 10.1128/mSystems.00091-18. eCollection 2019 Jan-Feb.

23.

A Functional Mini-Integrase in a Two-Protein-type V-C CRISPR System.

Wright AV, Wang JY, Burstein D, Harrington LB, Paez-Espino D, Kyrpides NC, Iavarone AT, Banfield JF, Doudna JA.

Mol Cell. 2019 Feb 21;73(4):727-737.e3. doi: 10.1016/j.molcel.2018.12.015. Epub 2019 Jan 29.

24.

Toward unrestricted use of public genomic data.

Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, Hallam SJ, Hugenholtz P, Ioannidis JPA, Jansson JK, Kim JF, Klenk HP, Klotz MG, Knight R, Konstantinidis KT, Kyrpides NC, Mason CE, McHardy AC, Meyer F, Ouzounis CA, Patrinos AAN, Podar M, Pollard KS, Ravel J, Muñoz AR, Roberts RJ, Rosselló-Móra R, Sansone SA, Schloss PD, Schriml LM, Setubal JC, Sorek R, Stevens RL, Tiedje JM, Turjanski A, Tyson GW, Ussery DW, Weinstock GM, White O, Whitman WB, Xenarios I.

Science. 2019 Jan 25;363(6425):350-352. doi: 10.1126/science.aaw1280. No abstract available.

PMID:
30679363
25.

Minimum Information about an Uncultivated Virus Genome (MIUViG).

Roux S, Adriaenssens EM, Dutilh BE, Koonin EV, Kropinski AM, Krupovic M, Kuhn JH, Lavigne R, Brister JR, Varsani A, Amid C, Aziz RK, Bordenstein SR, Bork P, Breitbart M, Cochrane GR, Daly RA, Desnues C, Duhaime MB, Emerson JB, Enault F, Fuhrman JA, Hingamp P, Hugenholtz P, Hurwitz BL, Ivanova NN, Labonté JM, Lee KB, Malmstrom RR, Martinez-Garcia M, Mizrachi IK, Ogata H, Páez-Espino D, Petit MA, Putonti C, Rattei T, Reyes A, Rodriguez-Valera F, Rosario K, Schriml L, Schulz F, Steward GF, Sullivan MB, Sunagawa S, Suttle CA, Temperton B, Tringe SG, Thurber RV, Webster NS, Whiteson KL, Wilhelm SW, Wommack KE, Woyke T, Wrighton KC, Yilmaz P, Yoshida T, Young MJ, Yutin N, Allen LZ, Kyrpides NC, Eloe-Fadrosh EA.

Nat Biotechnol. 2019 Jan;37(1):29-37. doi: 10.1038/nbt.4306. Epub 2018 Dec 17.

26.

Genome Sequences of Actinobacteria from Extreme Environments in Colombia.

Cantillo A, Shapiro N, Woyke T, Kyrpides NC, Baena S, Zambrano MM.

Microbiol Resour Announc. 2018 Dec 6;7(22). pii: e01384-18. doi: 10.1128/MRA.01384-18. eCollection 2018 Dec.

27.

Draft Genome Sequences of New Isolates and the Known Species of the Family Microbacteriaceae Associated with Plants.

Vasilenko OV, Starodumova IP, Dorofeeva LV, Tarlachkov SV, Prisyazhnaya NV, Chizhov VN, Subbotin SA, Huntemann M, Clum A, Duffy K, Pillay M, Palaniappan K, Varghese N, Chen IA, Stamatis D, Reddy TBK, O'Malley R, Daum C, Shapiro N, Ivanova N, Kyrpides NC, Woyke T, Whitman WB, Evtushenko LI.

Microbiol Resour Announc. 2018 Sep 20;7(11). pii: e01051-18. doi: 10.1128/MRA.01051-18. eCollection 2018 Sep.

28.

IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes.

Paez-Espino D, Roux S, Chen IA, Palaniappan K, Ratner A, Chu K, Huntemann M, Reddy TBK, Pons JC, Llabrés M, Eloe-Fadrosh EA, Ivanova NN, Kyrpides NC.

Nucleic Acids Res. 2019 Jan 8;47(D1):D678-D686. doi: 10.1093/nar/gky1127.

29.

Genomes OnLine database (GOLD) v.7: updates and new features.

Mukherjee S, Stamatis D, Bertsch J, Ovchinnikova G, Katta HY, Mojica A, Chen IA, Kyrpides NC, Reddy T.

Nucleic Acids Res. 2019 Jan 8;47(D1):D649-D659. doi: 10.1093/nar/gky977.

30.

Programmed DNA destruction by miniature CRISPR-Cas14 enzymes.

Harrington LB, Burstein D, Chen JS, Paez-Espino D, Ma E, Witte IP, Cofsky JC, Kyrpides NC, Banfield JF, Doudna JA.

Science. 2018 Nov 16;362(6416):839-842. doi: 10.1126/science.aav4294. Epub 2018 Oct 18.

31.

IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes.

Chen IA, Chu K, Palaniappan K, Pillay M, Ratner A, Huang J, Huntemann M, Varghese N, White JR, Seshadri R, Smirnova T, Kirton E, Jungbluth SP, Woyke T, Eloe-Fadrosh EA, Ivanova NN, Kyrpides NC.

Nucleic Acids Res. 2019 Jan 8;47(D1):D666-D677. doi: 10.1093/nar/gky901.

32.

Single-cell genomics of co-sorted Nanoarchaeota suggests novel putative host associations and diversification of proteins involved in symbiosis.

Jarett JK, Nayfach S, Podar M, Inskeep W, Ivanova NN, Munson-McGee J, Schulz F, Young M, Jay ZJ, Beam JP, Kyrpides NC, Malmstrom RR, Stepanauskas R, Woyke T.

Microbiome. 2018 Sep 17;6(1):161. doi: 10.1186/s40168-018-0539-8.

33.

Genome-Based Taxonomic Classification of the Phylum Actinobacteria.

Nouioui I, Carro L, García-López M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Göker M.

Front Microbiol. 2018 Aug 22;9:2007. doi: 10.3389/fmicb.2018.02007. eCollection 2018.

34.

Murine colitis reveals a disease-associated bacteriophage community.

Duerkop BA, Kleiner M, Paez-Espino D, Zhu W, Bushnell B, Hassell B, Winter SE, Kyrpides NC, Hooper LV.

Nat Microbiol. 2018 Sep;3(9):1023-1031. doi: 10.1038/s41564-018-0210-y. Epub 2018 Jul 23.

35.

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T.

Nat Biotechnol. 2018 Jul 6;36(7):660. doi: 10.1038/nbt0718-660a. No abstract available.

PMID:
29979671
36.

Description of Alicyclobacillus montanus sp. nov., a mixotrophic bacterium isolated from acidic hot springs.

López G, Díaz-Cárdenas C, David Alzate J, Gonzalez LN, Shapiro N, Woyke T, Kyrpides NC, Restrepo S, Baena S.

Int J Syst Evol Microbiol. 2018 May;68(5):1608-1615. doi: 10.1099/ijsem.0.002718. Epub 2018 Mar 20.

PMID:
29557767
37.

Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection.

Seshadri R, Leahy SC, Attwood GT, Teh KH, Lambie SC, Cookson AL, Eloe-Fadrosh EA, Pavlopoulos GA, Hadjithomas M, Varghese NJ, Paez-Espino D; Hungate1000 project collaborators, Perry R, Henderson G, Creevey CJ, Terrapon N, Lapebie P, Drula E, Lombard V, Rubin E, Kyrpides NC, Henrissat B, Woyke T, Ivanova NN, Kelly WJ.

Nat Biotechnol. 2018 Apr;36(4):359-367. doi: 10.1038/nbt.4110. Epub 2018 Mar 19.

38.

Corrigendum: Genome-Based Taxonomic Classification of Bacteroidetes.

Hahnke RL, Meier-Kolthoff JP, García-López M, Mukherjee S, Huntemann M, Ivanova NN, Woyke T, Kyrpides NC, Klenk HP, Göker M.

Front Microbiol. 2018 Feb 21;9:304. doi: 10.3389/fmicb.2018.00304. eCollection 2018.

39.

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T.

Nat Biotechnol. 2018 Feb 6;36(2):196. doi: 10.1038/nbt0218-196a. No abstract available.

40.

Complete Genome Sequence of Thermoanaerobacterium sp. Strain RBIITD, a Butyrate- and Butanol-Producing Thermophile.

Biswas R, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TBK, Daum C, Shapiro N, Ivanova N, Kyrpides NC, Woyke T, Guss AM.

Genome Announc. 2018 Jan 11;6(2). pii: e01411-17. doi: 10.1128/genomeA.01411-17.

41.

Arboriscoccus pini gen. nov., sp. nov., an endophyte from a pine tree of the class Alphaproteobacteria, emended description of Geminicoccus roseus, and proposal of Geminicoccaceae fam. nov.

Proença DN, Whitman WB, Varghese N, Shapiro N, Woyke T, Kyrpides NC, Morais PV.

Syst Appl Microbiol. 2018 Mar;41(2):94-100. doi: 10.1016/j.syapm.2017.11.006. Epub 2017 Dec 22.

PMID:
29325988
42.

Genome-based classification of micromonosporae with a focus on their biotechnological and ecological potential.

Carro L, Nouioui I, Sangal V, Meier-Kolthoff JP, Trujillo ME, Montero-Calasanz MDC, Sahin N, Smith DL, Kim KE, Peluso P, Deshpande S, Woyke T, Shapiro N, Kyrpides NC, Klenk HP, Göker M, Goodfellow M.

Sci Rep. 2018 Jan 11;8(1):525. doi: 10.1038/s41598-017-17392-0.

43.

HipMCL: a high-performance parallel implementation of the Markov clustering algorithm for large-scale networks.

Azad A, Pavlopoulos GA, Ouzounis CA, Kyrpides NC, Buluç A.

Nucleic Acids Res. 2018 Apr 6;46(6):e33. doi: 10.1093/nar/gkx1313.

44.

Genome-Scale Data Call for a Taxonomic Rearrangement of Geodermatophilaceae.

Montero-Calasanz MDC, Meier-Kolthoff JP, Zhang DF, Yaramis A, Rohde M, Woyke T, Kyrpides NC, Schumann P, Li WJ, Göker M.

Front Microbiol. 2017 Dec 19;8:2501. doi: 10.3389/fmicb.2017.02501. eCollection 2017.

45.

How Much Do rRNA Gene Surveys Underestimate Extant Bacterial Diversity?

Rodriguez-R LM, Castro JC, Kyrpides NC, Cole JR, Tiedje JM, Konstantinidis KT.

Appl Environ Microbiol. 2018 Mar 1;84(6). pii: e00014-18. doi: 10.1128/AEM.00014-18. Print 2018 Mar 15.

46.

Draft genome sequence of Dethiosulfovibrio salsuginis DSM 21565T an anaerobic, slightly halophilic bacterium isolated from a Colombian saline spring.

Díaz-Cárdenas C, López G, Alzate-Ocampo JD, González LN, Shapiro N, Woyke T, Kyrpides NC, Restrepo S, Baena S.

Stand Genomic Sci. 2017 Dec 20;12:86. doi: 10.1186/s40793-017-0303-x. eCollection 2017.

47.

Draft genome sequence of Pseudomonas extremaustralis strain USBA-GBX 515 isolated from Superparamo soil samples in Colombian Andes.

López G, Diaz-Cárdenas C, Shapiro N, Woyke T, Kyrpides NC, David Alzate J, González LN, Restrepo S, Baena S.

Stand Genomic Sci. 2017 Dec 15;12:78. doi: 10.1186/s40793-017-0292-9. eCollection 2017.

48.

Draft genome sequences of Bradyrhizobium shewense sp. nov. ERR11T and Bradyrhizobium yuanmingense CCBAU 10071T.

Aserse AA, Woyke T, Kyrpides NC, Whitman WB, Lindström K.

Stand Genomic Sci. 2017 Dec 5;12:74. doi: 10.1186/s40793-017-0283-x. eCollection 2017.

49.

Draft genome sequence of Actinotignum schaalii DSM 15541T: Genetic insights into the lifestyle, cell fitness and virulence.

Yassin AF, Langenberg S, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Mukherjee S, Reddy TBK, Daum C, Shapiro N, Ivanova N, Woyke T, Kyrpides NC.

PLoS One. 2017 Dec 7;12(12):e0188914. doi: 10.1371/journal.pone.0188914. eCollection 2017.

50.

Comparative metagenomics of hydrocarbon and methane seeps of the Gulf of Mexico.

Vigneron A, Alsop EB, Cruaud P, Philibert G, King B, Baksmaty L, Lavallée D, P Lomans B, Kyrpides NC, Head IM, Tsesmetzis N.

Sci Rep. 2017 Nov 22;7(1):16015. doi: 10.1038/s41598-017-16375-5.

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