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Items: 17

1.

Interactive Peptide Spectral Annotator: A Versatile Web-based Tool for Proteomic Applications.

Brademan DR, Riley NM, Kwiecien NW, Coon JJ.

Mol Cell Proteomics. 2019 Aug 9;18(8 suppl 1):S193-S201. doi: 10.1074/mcp.TIR118.001209. Epub 2019 May 14.

2.

Islet proteomics reveals genetic variation in dopamine production resulting in altered insulin secretion.

Mitok KA, Freiberger EC, Schueler KL, Rabaglia ME, Stapleton DS, Kwiecien NW, Malec PA, Hebert AS, Broman AT, Kennedy RT, Keller MP, Coon JJ, Attie AD.

J Biol Chem. 2018 Apr 20;293(16):5860-5877. doi: 10.1074/jbc.RA117.001102. Epub 2018 Mar 1.

3.

Improved Precursor Characterization for Data-Dependent Mass Spectrometry.

Hebert AS, Thöing C, Riley NM, Kwiecien NW, Shiskova E, Huguet R, Cardasis HL, Kuehn A, Eliuk S, Zabrouskov V, Westphall MS, McAlister GC, Coon JJ.

Anal Chem. 2018 Feb 6;90(3):2333-2340. doi: 10.1021/acs.analchem.7b04808. Epub 2018 Jan 11.

4.

Multi-omics Reveal Specific Targets of the RNA-Binding Protein Puf3p and Its Orchestration of Mitochondrial Biogenesis.

Lapointe CP, Stefely JA, Jochem A, Hutchins PD, Wilson GM, Kwiecien NW, Coon JJ, Wickens M, Pagliarini DJ.

Cell Syst. 2018 Jan 24;6(1):125-135.e6. doi: 10.1016/j.cels.2017.11.012. Epub 2017 Dec 13.

5.

Multi-omic Mitoprotease Profiling Defines a Role for Oct1p in Coenzyme Q Production.

Veling MT, Reidenbach AG, Freiberger EC, Kwiecien NW, Hutchins PD, Drahnak MJ, Jochem A, Ulbrich A, Rush MJP, Russell JD, Coon JJ, Pagliarini DJ.

Mol Cell. 2017 Dec 7;68(5):970-977.e11. doi: 10.1016/j.molcel.2017.11.023.

6.

Gender Diversity in a STEM Subfield - Analysis of a Large Scientific Society and Its Annual Conferences.

Shishkova E, Kwiecien NW, Hebert AS, Westphall MS, Prenni JE, Coon JJ.

J Am Soc Mass Spectrom. 2017 Dec;28(12):2523-2531. doi: 10.1007/s13361-017-1803-z. Epub 2017 Sep 26.

7.

Global mapping of CARM1 substrates defines enzyme specificity and substrate recognition.

Shishkova E, Zeng H, Liu F, Kwiecien NW, Hebert AS, Coon JJ, Xu W.

Nat Commun. 2017 May 24;8:15571. doi: 10.1038/ncomms15571.

8.

A proteomic atlas of the legume Medicago truncatula and its nitrogen-fixing endosymbiont Sinorhizobium meliloti.

Marx H, Minogue CE, Jayaraman D, Richards AL, Kwiecien NW, Siahpirani AF, Rajasekar S, Maeda J, Garcia K, Del Valle-Echevarria AR, Volkening JD, Westphall MS, Roy S, Sussman MR, Ané JM, Coon JJ.

Nat Biotechnol. 2016 Nov;34(11):1198-1205. doi: 10.1038/nbt.3681. Epub 2016 Oct 17.

PMID:
27748755
9.

Mitochondrial protein functions elucidated by multi-omic mass spectrometry profiling.

Stefely JA, Kwiecien NW, Freiberger EC, Richards AL, Jochem A, Rush MJP, Ulbrich A, Robinson KP, Hutchins PD, Veling MT, Guo X, Kemmerer ZA, Connors KJ, Trujillo EA, Sokol J, Marx H, Westphall MS, Hebert AS, Pagliarini DJ, Coon JJ.

Nat Biotechnol. 2016 Nov;34(11):1191-1197. doi: 10.1038/nbt.3683. Epub 2016 Sep 26.

10.

Cerebellar Ataxia and Coenzyme Q Deficiency through Loss of Unorthodox Kinase Activity.

Stefely JA, Licitra F, Laredj L, Reidenbach AG, Kemmerer ZA, Grangeray A, Jaeg-Ehret T, Minogue CE, Ulbrich A, Hutchins PD, Wilkerson EM, Ruan Z, Aydin D, Hebert AS, Guo X, Freiberger EC, Reutenauer L, Jochem A, Chergova M, Johnson IE, Lohman DC, Rush MJP, Kwiecien NW, Singh PK, Schlagowski AI, Floyd BJ, Forsman U, Sindelar PJ, Westphall MS, Pierrel F, Zoll J, Dal Peraro M, Kannan N, Bingman CA, Coon JJ, Isope P, Puccio H, Pagliarini DJ.

Mol Cell. 2016 Aug 18;63(4):608-620. doi: 10.1016/j.molcel.2016.06.030. Epub 2016 Aug 4.

11.

NeuCode Labeling in Nematodes: Proteomic and Phosphoproteomic Impact of Ascaroside Treatment in Caenorhabditis elegans.

Rhoads TW, Prasad A, Kwiecien NW, Merrill AE, Zawack K, Westphall MS, Schroeder FC, Kimble J, Coon JJ.

Mol Cell Proteomics. 2015 Nov;14(11):2922-35. doi: 10.1074/mcp.M115.049684. Epub 2015 Sep 21.

12.

A role for the mevalonate pathway in early plant symbiotic signaling.

Venkateshwaran M, Jayaraman D, Chabaud M, Genre A, Balloon AJ, Maeda J, Forshey K, den Os D, Kwiecien NW, Coon JJ, Barker DG, Ané JM.

Proc Natl Acad Sci U S A. 2015 Aug 4;112(31):9781-6. doi: 10.1073/pnas.1413762112. Epub 2015 Jul 21. Erratum in: Proc Natl Acad Sci U S A. 2015 Sep 22;112(38):E5378.

13.

The Negative Mode Proteome with Activated Ion Negative Electron Transfer Dissociation (AI-NETD).

Riley NM, Rush MJ, Rose CM, Richards AL, Kwiecien NW, Bailey DJ, Hebert AS, Westphall MS, Coon JJ.

Mol Cell Proteomics. 2015 Oct;14(10):2644-60. doi: 10.1074/mcp.M115.049726. Epub 2015 Jul 20.

14.

High-resolution filtering for improved small molecule identification via GC/MS.

Kwiecien NW, Bailey DJ, Rush MJ, Cole JS, Ulbrich A, Hebert AS, Westphall MS, Coon JJ.

Anal Chem. 2015 Aug 18;87(16):8328-35. doi: 10.1021/acs.analchem.5b01503. Epub 2015 Aug 7.

15.

A calibration routine for efficient ETD in large-scale proteomics.

Rose CM, Rush MJ, Riley NM, Merrill AE, Kwiecien NW, Holden DD, Mullen C, Westphall MS, Coon JJ.

J Am Soc Mass Spectrom. 2015 Nov;26(11):1848-57. doi: 10.1007/s13361-015-1183-1. Epub 2015 Jun 26.

16.

Structural Characterization of Methylenedianiline Regioisomers by Ion Mobility-Mass Spectrometry, Tandem Mass Spectrometry, and Computational Strategies. 2. Electrospray Spectra of 3-Ring and 4-Ring Isomers.

Stow SM, Onifer TM, Forsythe JG, Nefzger H, Kwiecien NW, May JC, McLean JA, Hercules DM.

Anal Chem. 2015 Jun 16;87(12):6288-96. doi: 10.1021/acs.analchem.5b01084. Epub 2015 May 22.

17.

Structural characterization of methylenedianiline regioisomers by ion mobility-mass spectrometry, tandem mass spectrometry, and computational strategies: I. Electrospray spectra of 2-ring isomers.

Forsythe JG, Stow SM, Nefzger H, Kwiecien NW, May JC, McLean JA, Hercules DM.

Anal Chem. 2014 May 6;86(9):4362-70. doi: 10.1021/ac5001652. Epub 2014 Apr 10.

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