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Items: 6

1.

Early genome activation in Drosophila is extensive with an initial tendency for aborted transcripts and retained introns.

Kwasnieski JC, Orr-Weaver TL, Bartel DP.

Genome Res. 2019 Jul;29(7):1188-1197. doi: 10.1101/gr.242164.118. Epub 2019 Jun 24.

PMID:
31235656
2.

A Simple Grammar Defines Activating and Repressing cis-Regulatory Elements in Photoreceptors.

White MA, Kwasnieski JC, Myers CA, Shen SQ, Corbo JC, Cohen BA.

Cell Rep. 2016 Oct 25;17(5):1247-1254. doi: 10.1016/j.celrep.2016.09.066.

3.

mRNA poly(A)-tail changes specified by deadenylation broadly reshape translation in Drosophila oocytes and early embryos.

Eichhorn SW, Subtelny AO, Kronja I, Kwasnieski JC, Orr-Weaver TL, Bartel DP.

Elife. 2016 Jul 30;5. pii: e16955. doi: 10.7554/eLife.16955.

4.

High-throughput functional testing of ENCODE segmentation predictions.

Kwasnieski JC, Fiore C, Chaudhari HG, Cohen BA.

Genome Res. 2014 Oct;24(10):1595-602. doi: 10.1101/gr.173518.114. Epub 2014 Jul 17.

5.

Massively parallel synthetic promoter assays reveal the in vivo effects of binding site variants.

Mogno I, Kwasnieski JC, Cohen BA.

Genome Res. 2013 Nov;23(11):1908-15. doi: 10.1101/gr.157891.113. Epub 2013 Aug 6.

6.

Complex effects of nucleotide variants in a mammalian cis-regulatory element.

Kwasnieski JC, Mogno I, Myers CA, Corbo JC, Cohen BA.

Proc Natl Acad Sci U S A. 2012 Nov 20;109(47):19498-503. doi: 10.1073/pnas.1210678109. Epub 2012 Nov 5.

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