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Items: 1 to 50 of 181

1.

Risk factors and patterns of household clusters of respiratory viruses in rural Nepal.

Scott EM, Magaret A, Kuypers J, Tielsch JM, Katz J, Khatry SK, Stewart L, Shrestha L, LeClerq SC, Englund JA, Chu HY.

Epidemiol Infect. 2019 Oct 14;147:e288. doi: 10.1017/S0950268819001754.

2.

Phylogenetic characterization of rhinoviruses from infants in Sarlahi, Nepal.

Kuypers J, Perchetti GA, Chu HY, Newman KL, Katz J, Khatry SK, LeClerq SC, Jerome KR, Tielsch JM, Englund JA.

J Med Virol. 2019 Dec;91(12):2108-2116. doi: 10.1002/jmv.25563. Epub 2019 Aug 21.

PMID:
31389049
3.

Respiratory Syncytial Virus Infection in Homeless Populations, Washington, USA.

Boonyaratanakornkit J, Ekici S, Magaret A, Gustafson K, Scott E, Haglund M, Kuypers J, Pergamit R, Lynch J, Chu HY.

Emerg Infect Dis. 2019 Jul;25(7):1408-1411. doi: 10.3201/eid2507.181261.

4.

Infant Pneumococcal Carriage During Influenza, RSV, and hMPV Respiratory Illness Within a Maternal Influenza Immunization Trial.

Murray AF, Englund JA, Kuypers J, Tielsch JM, Katz J, Khatry SK, Leclerq SC, Chu HY.

J Infect Dis. 2019 Aug 9;220(6):956-960. doi: 10.1093/infdis/jiz212.

5.

Evaluating addition of self-collected throat swabs to nasal swabs for respiratory virus detection.

Fisher CE, Boeckh M, Jerome KR, Englund J, Kuypers J.

J Clin Virol. 2019 Jun;115:43-46. doi: 10.1016/j.jcv.2019.04.001. Epub 2019 Apr 4.

PMID:
30978619
6.

Impact of Rapid Molecular Detection of Respiratory Viruses on Clinical Outcomes and Patient Management.

Kuypers J.

J Clin Microbiol. 2019 Mar 28;57(4). pii: e01890-18. doi: 10.1128/JCM.01890-18. Print 2019 Apr.

7.

Prospective, Real-time Metagenomic Sequencing During Norovirus Outbreak Reveals Discrete Transmission Clusters.

Casto AM, Adler AL, Makhsous N, Crawford K, Qin X, Kuypers JM, Huang ML, Zerr DM, Greninger AL.

Clin Infect Dis. 2019 Aug 30;69(6):941-948. doi: 10.1093/cid/ciy1020.

8.

Human Rhinovirus Infections in Hematopoietic Cell Transplant Recipients: Risk Score for Progression to Lower Respiratory Tract Infection.

Waghmare A, Xie H, Kuypers J, Sorror ML, Jerome KR, Englund JA, Boeckh M, Leisenring WM.

Biol Blood Marrow Transplant. 2019 May;25(5):1011-1021. doi: 10.1016/j.bbmt.2018.12.005. Epub 2018 Dec 8.

PMID:
30537551
9.

Molecular characterization of influenza viruses from women and infants in Sarlahi, Nepal.

Kuypers J, Chu HY, Gaydos CA, Katz J, Khatry SK, LeClerq SC, Tielsch JM, Steinhoff MC, Englund JA.

Diagn Microbiol Infect Dis. 2019 Apr;93(4):305-310. doi: 10.1016/j.diagmicrobio.2018.11.004. Epub 2018 Nov 15.

PMID:
30528424
10.

Primary and Repeated Respiratory Viral Infections Among Infants in Rural Nepal.

Boonyaratanakornkit J, Englund JA, Magaret AS, Bu Y, Tielsch JM, Khatry SK, Katz J, Kuypers J, Shrestha L, LeClerq SC, Steinhoff MC, Chu HY.

J Pediatric Infect Dis Soc. 2018 Nov 12. doi: 10.1093/jpids/piy107. [Epub ahead of print]

PMID:
30423150
11.

Risk Factors for Parainfluenza Virus Lower Respiratory Tract Disease after Hematopoietic Cell Transplantation.

Seo S, Xie H, Leisenring WM, Kuypers JM, Sahoo FT, Goyal S, Kimball LE, Campbell AP, Jerome KR, Englund JA, Boeckh M.

Biol Blood Marrow Transplant. 2019 Jan;25(1):163-171. doi: 10.1016/j.bbmt.2018.08.021. Epub 2018 Aug 25.

PMID:
30149147
12.

Initial High Viral Load Is Associated with Prolonged Shedding of Human Rhinovirus in Allogeneic Hematopoietic Cell Transplant Recipients.

Ogimi C, Xie H, Leisenring WM, Kuypers JM, Jerome KR, Campbell AP, Englund JA, Boeckh M, Waghmare A.

Biol Blood Marrow Transplant. 2018 Oct;24(10):2160-2163. doi: 10.1016/j.bbmt.2018.07.006. Epub 2018 Aug 7.

13.

Antibiotic Exposure Prior to Respiratory Viral Infection Is Associated with Progression to Lower Respiratory Tract Disease in Allogeneic Hematopoietic Cell Transplant Recipients.

Ogimi C, Krantz EM, Golob JL, Waghmare A, Liu C, Leisenring WM, Woodard CR, Marquis S, Kuypers JM, Jerome KR, Pergam SA, Fredricks DN, Sorror ML, Englund JA, Boeckh M.

Biol Blood Marrow Transplant. 2018 Nov;24(11):2293-2301. doi: 10.1016/j.bbmt.2018.05.016. Epub 2018 May 16.

14.

Heterotypic Infection and Spread of Rhinovirus A, B, and C among Childcare Attendees.

Martin ET, Kuypers J, Chu HY, Foote S, Hashikawa A, Fairchok MP, Englund JA.

J Infect Dis. 2018 Aug 14;218(6):848-855. doi: 10.1093/infdis/jiy232.

PMID:
29684211
15.

Burden and Risk Factors for Coronavirus Infections in Infants in Rural Nepal.

Uddin SMI, Englund JA, Kuypers JY, Chu HY, Steinhoff MC, Khatry SK, LeClerq SC, Tielsch JM, Mullany LC, Shrestha L, Katz J.

Clin Infect Dis. 2018 Oct 30;67(10):1507-1514. doi: 10.1093/cid/ciy317.

16.

Enterovirus D-68 in children presenting for acute care in the hospital setting.

Savage TJ, Kuypers J, Chu HY, Bradford MC, Buccat AM, Qin X, Klein EJ, Jerome KR, Englund JA, Waghmare A.

Influenza Other Respir Viruses. 2018 Jul;12(4):522-528. doi: 10.1111/irv.12551. Epub 2018 Mar 23.

17.

3D-Printed masks as a new approach for immobilization in radiotherapy - a study of positioning accuracy.

Haefner MF, Giesel FL, Mattke M, Rath D, Wade M, Kuypers J, Preuss A, Kauczor HU, Schenk JP, Debus J, Sterzing F, Unterhinninghofen R.

Oncotarget. 2018 Jan 8;9(5):6490-6498. doi: 10.18632/oncotarget.24032. eCollection 2018 Jan 19.

18.

Impact of Timing of Influenza Vaccination in Pregnancy on Transplacental Antibody Transfer, Influenza Incidence, and Birth Outcomes: A Randomized Trial in Rural Nepal.

Katz J, Englund JA, Steinhoff MC, Khatry SK, Shrestha L, Kuypers J, Mullany LC, Chu HY, LeClerq SC, Kozuki N, Tielsch JM.

Clin Infect Dis. 2018 Jul 18;67(3):334-340. doi: 10.1093/cid/ciy090.

19.

Myeloablation-associated deletion of ORF4 in a human coronavirus 229E infection.

Greninger AL, Pepper G, Shean RC, Cent A, Palileo I, Kuypers JM, Schiffer JT, Jerome KR.

NPJ Genom Med. 2017 Oct 9;2:30. doi: 10.1038/s41525-017-0033-4. eCollection 2017.

20.

Diagnostic and Prognostic Plasma Biomarkers for Idiopathic Pneumonia Syndrome after Hematopoietic Cell Transplantation.

Seo S, Yu J, Jenkins IC, Leisenring WM, Steven-Ayers T, Kuypers JM, Huang ML, Jerome KR, Boeckh M, Paczesny S.

Biol Blood Marrow Transplant. 2018 Apr;24(4):678-686. doi: 10.1016/j.bbmt.2017.11.039. Epub 2017 Dec 6.

21.

Nutritional status of infants at six months of age following maternal influenza immunization: A randomized placebo-controlled trial in rural Nepal.

Katz J, Englund JA, Steinhoff MC, Khatry SK, Shrestha L, Kuypers J, Mullany LC, Chu HY, LeClerq SC, Kozuki N, Tielsch JM.

Vaccine. 2017 Dec 4;35(48 Pt B):6743-6750. doi: 10.1016/j.vaccine.2017.09.095. Epub 2017 Oct 31.

22.

Impact of maternal vaccination timing and influenza virus circulation on birth outcomes in rural Nepal.

Kozuki N, Katz J, Englund JA, Steinhoff MC, Khatry SK, Shrestha L, Kuypers J, Mullany LC, Chu HY, LeClerq SC, Tielsch JM.

Int J Gynaecol Obstet. 2018 Jan;140(1):65-72. doi: 10.1002/ijgo.12341. Epub 2017 Nov 9.

23.

Transplacental transfer of maternal respiratory syncytial virus (RSV) antibody and protection against RSV disease in infants in rural Nepal.

Chu HY, Tielsch J, Katz J, Magaret AS, Khatry S, LeClerq SC, Shrestha L, Kuypers J, Steinhoff MC, Englund JA.

J Clin Virol. 2017 Oct;95:90-95. doi: 10.1016/j.jcv.2017.08.017. Epub 2017 Sep 2.

24.

Prolonged Shedding of Human Coronavirus in Hematopoietic Cell Transplant Recipients: Risk Factors and Viral Genome Evolution.

Ogimi C, Greninger AL, Waghmare AA, Kuypers JM, Shean RC, Xie H, Leisenring WM, Stevens-Ayers TL, Jerome KR, Englund JA, Boeckh M.

J Infect Dis. 2017 Jul 15;216(2):203-209. doi: 10.1093/infdis/jix264.

25.

Human Metapneumovirus and Other Respiratory Viral Infections during Pregnancy and Birth, Nepal.

Lenahan JL, Englund JA, Katz J, Kuypers J, Wald A, Magaret A, Tielsch JM, Khatry SK, LeClerq SC, Shrestha L, Steinhoff MC, Chu HY.

Emerg Infect Dis. 2017 Aug;23(8). doi: 10.3201/eid2308.161358.

26.

Febrile Rhinovirus Illness During Pregnancy Is Associated With Low Birth Weight in Nepal.

Philpott EK, Englund JA, Katz J, Tielsch J, Khatry S, LeClerq SC, Shrestha L, Kuypers J, Magaret AS, Steinhoff MC, Chu HY.

Open Forum Infect Dis. 2017 Apr 6;4(2):ofx073. doi: 10.1093/ofid/ofx073. eCollection 2017 Spring. Erratum in: Open Forum Infect Dis. 2018 Jan 30;5(1):ofx182.

27.

Year-round influenza immunisation during pregnancy in Nepal: a phase 4, randomised, placebo-controlled trial.

Steinhoff MC, Katz J, Englund JA, Khatry SK, Shrestha L, Kuypers J, Stewart L, Mullany LC, Chu HY, LeClerq SC, Kozuki N, McNeal M, Reedy AM, Tielsch JM.

Lancet Infect Dis. 2017 Sep;17(9):981-989. doi: 10.1016/S1473-3099(17)30252-9. Epub 2017 May 15.

28.

Comparison of self-collected nasal swabs with oral washes for sequential viral load monitoring in lung transplant recipients with respiratory virus infection.

Fisher CE, Bornstein R, Kuypers J, Jerome KR, Boeckh M, Limaye AP.

J Clin Virol. 2017 Jun;91:49-51. doi: 10.1016/j.jcv.2017.04.009. Epub 2017 Apr 14. No abstract available.

PMID:
28463754
29.

Rule-Out Outbreak: 24-Hour Metagenomic Next-Generation Sequencing for Characterizing Respiratory Virus Source for Infection Prevention.

Greninger AL, Waghmare A, Adler A, Qin X, Crowley JL, Englund JA, Kuypers JM, Jerome KR, Zerr DM.

J Pediatric Infect Dis Soc. 2017 Jun 1;6(2):168-172. doi: 10.1093/jpids/pix019.

30.

Clinical Significance of Human Coronavirus in Bronchoalveolar Lavage Samples From Hematopoietic Cell Transplant Recipients and Patients With Hematologic Malignancies.

Ogimi C, Waghmare AA, Kuypers JM, Xie H, Yeung CC, Leisenring WM, Seo S, Choi SM, Jerome KR, Englund JA, Boeckh M.

Clin Infect Dis. 2017 Jun 1;64(11):1532-1539. doi: 10.1093/cid/cix160. Erratum in: Clin Infect Dis. 2017 Oct 15;65(8):1431-1433.

31.

Applications of Digital PCR for Clinical Microbiology.

Kuypers J, Jerome KR.

J Clin Microbiol. 2017 Jun;55(6):1621-1628. doi: 10.1128/JCM.00211-17. Epub 2017 Mar 15. Review.

32.

Human rhinovirus detection in the lower respiratory tract of hematopoietic cell transplant recipients: association with mortality.

Seo S, Waghmare A, Scott EM, Xie H, Kuypers JM, Hackman RC, Campbell AP, Choi SM, Leisenring WM, Jerome KR, Englund JA, Boeckh M.

Haematologica. 2017 Jun;102(6):1120-1130. doi: 10.3324/haematol.2016.153767. Epub 2017 Feb 9.

33.

Population-Based Pertussis Incidence and Risk Factors in Infants Less Than 6 Months in Nepal.

Hughes MM, Englund JA, Kuypers J, Tielsch JM, Khatry SK, Shrestha L, LeClerq SC, Steinhoff M, Katz J.

J Pediatric Infect Dis Soc. 2017 Mar 1;6(1):33-39. doi: 10.1093/jpids/piw079.

34.

Superiority of Digital Reverse Transcription-PCR (RT-PCR) over Real-Time RT-PCR for Quantitation of Highly Divergent Human Rhinoviruses.

Sedlak RH, Nguyen T, Palileo I, Jerome KR, Kuypers J.

J Clin Microbiol. 2017 Feb;55(2):442-449. doi: 10.1128/JCM.01970-16. Epub 2016 Nov 23.

35.

Rapid Metagenomic Next-Generation Sequencing during an Investigation of Hospital-Acquired Human Parainfluenza Virus 3 Infections.

Greninger AL, Zerr DM, Qin X, Adler AL, Sampoleo R, Kuypers JM, Englund JA, Jerome KR.

J Clin Microbiol. 2016 Dec 28;55(1):177-182. doi: 10.1128/JCM.01881-16. Print 2017 Jan.

36.

Respiratory syncytial virus infection in infants in rural Nepal.

Chu HY, Katz J, Tielsch J, Khatry SK, Shrestha L, LeClerq SC, Magaret A, Kuypers J, Steinhoff M, Englund JA.

J Infect. 2016 Aug;73(2):145-54. doi: 10.1016/j.jinf.2016.05.007. Epub 2016 May 27.

37.

Bloodborne Viral Pathogen Contamination in the Era of Laboratory Automation.

Bryan A, Cook L, Atienza EE, Kuypers J, Cent A, Baird GS, Coombs RW, Jerome KR, Wener MH, Butler-Wu SM.

Clin Chem. 2016 Jul;62(7):973-81. doi: 10.1373/clinchem.2016.255349. Epub 2016 May 19.

38.

Human Metapneumovirus Infections Following Hematopoietic Cell Transplantation: Factors Associated With Disease Progression.

Seo S, Gooley TA, Kuypers JM, Stednick Z, Jerome KR, Englund JA, Boeckh M.

Clin Infect Dis. 2016 Jul 15;63(2):178-85. doi: 10.1093/cid/ciw284. Epub 2016 May 3.

39.

Clinical Presentation and Birth Outcomes Associated with Respiratory Syncytial Virus Infection in Pregnancy.

Chu HY, Katz J, Tielsch J, Khatry SK, Shrestha L, LeClerq SC, Magaret A, Kuypers J, Steinhoff MC, Englund JA.

PLoS One. 2016 Mar 31;11(3):e0152015. doi: 10.1371/journal.pone.0152015. eCollection 2016.

40.

Rhinovirus Disease in Children Seeking Care in a Tertiary Pediatric Emergency Department.

Chu HY, Englund JA, Strelitz B, Lacombe K, Jones C, Follmer K, Martin EK, Bradford M, Qin X, Kuypers J, Klein EJ.

J Pediatric Infect Dis Soc. 2016 Mar;5(1):29-38. doi: 10.1093/jpids/piu099. Epub 2014 Oct 19.

41.

Successful Treatment of Parainfluenza Virus Respiratory Tract Infection With DAS181 in 4 Immunocompromised Children.

Waghmare A, Wagner T, Andrews R, Smith S, Kuypers J, Boeckh M, Moss R, Englund JA.

J Pediatric Infect Dis Soc. 2015 Jun;4(2):114-8. doi: 10.1093/jpids/piu039. Epub 2014 May 14.

42.

Impact of rapid influenza PCR testing on hospitalization and antiviral use: A retrospective cohort study.

Chu HY, Englund JA, Huang D, Scott E, Chan JD, Jain R, Pottinger PS, Lynch JB, Dellit TH, Jerome KR, Kuypers J.

J Med Virol. 2015 Dec;87(12):2021-6. doi: 10.1002/jmv.24279. Epub 2015 Jun 12.

43.

Idiopathic pneumonia syndrome after hematopoietic cell transplantation: evidence of occult infectious etiologies.

Seo S, Renaud C, Kuypers JM, Chiu CY, Huang ML, Samayoa E, Xie H, Yu G, Fisher CE, Gooley TA, Miller S, Hackman RC, Myerson D, Sedlak RH, Kim YJ, Fukuda T, Fredricks DN, Madtes DK, Jerome KR, Boeckh M.

Blood. 2015 Jun 11;125(24):3789-97. doi: 10.1182/blood-2014-12-617035. Epub 2015 Apr 27.

44.

Designs of two randomized, community-based trials to assess the impact of influenza immunization during pregnancy on respiratory illness among pregnant women and their infants and reproductive outcomes in rural Nepal.

Tielsch JM, Steinhoff M, Katz J, Englund JA, Kuypers J, Khatry SK, Shrestha L, LeClerq SC.

BMC Pregnancy Childbirth. 2015 Feb 20;15:40. doi: 10.1186/s12884-015-0470-y.

45.

Clinical outcomes associated with respiratory virus detection before allogeneic hematopoietic stem cell transplant.

Campbell AP, Guthrie KA, Englund JA, Farney RM, Minerich EL, Kuypers J, Corey L, Boeckh M.

Clin Infect Dis. 2015 Jul 15;61(2):192-202. doi: 10.1093/cid/civ272. Epub 2015 Apr 5. Erratum in: Clin Infect Dis. 2015 Nov 15;61(10):1635.

46.

Human Bocavirus 1 Primary Infection and Shedding in Infants.

Martin ET, Kuypers J, McRoberts JP, Englund JA, Zerr DM.

J Infect Dis. 2015 Aug 15;212(4):516-24. doi: 10.1093/infdis/jiv044. Epub 2015 Jan 28.

47.

Clinical disease due to enterovirus D68 in adult hematologic malignancy patients and hematopoietic cell transplant recipients.

Waghmare A, Pergam SA, Jerome KR, Englund JA, Boeckh M, Kuypers J.

Blood. 2015 Mar 12;125(11):1724-9. doi: 10.1182/blood-2014-12-616516. Epub 2015 Jan 15.

48.

Molecular epidemiology of human rhinovirus infections in the pediatric emergency department.

Martin EK, Kuypers J, Chu HY, Lacombe K, Qin X, Strelitz B, Bradford M, Jones C, Klein EJ, Englund JA.

J Clin Virol. 2015 Jan;62:25-31. doi: 10.1016/j.jcv.2014.11.006. Epub 2014 Nov 15.

49.

A patient self-collection method for longitudinal monitoring of respiratory virus infection in solid organ transplant recipients.

Preiksaitis CM, Kuypers JM, Fisher CE, Campbell AP, Jerome KR, Huang ML, Boeckh M, Limaye AP.

J Clin Virol. 2015 Jan;62:98-102. doi: 10.1016/j.jcv.2014.10.021. Epub 2014 Nov 12.

50.

Comparison of the Simplexa HSV1 & 2 Direct kit and laboratory-developed real-time PCR assays for herpes simplex virus detection.

Kuypers J, Boughton G, Chung J, Hussey L, Huang ML, Cook L, Jerome KR.

J Clin Virol. 2015 Jan;62:103-5. doi: 10.1016/j.jcv.2014.11.003. Epub 2014 Nov 8.

PMID:
25464965

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