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Items: 1 to 50 of 86

1.

Cooperative predation in the social amoebae Dictyostelium discoideum.

Rubin M, Miller AD, Katoh-Kurasawa M, Dinh C, Kuspa A, Shaulsky G.

PLoS One. 2019 Jan 9;14(1):e0209438. doi: 10.1371/journal.pone.0209438. eCollection 2019.

2.

Lectins modulate the microbiota of social amoebae.

Dinh C, Farinholt T, Hirose S, Zhuchenko O, Kuspa A.

Science. 2018 Jul 27;361(6400):402-406. doi: 10.1126/science.aat2058.

PMID:
30049880
3.

The polymorphic proteins TgrB1 and TgrC1 function as a ligand-receptor pair in Dictyostelium allorecognition.

Hirose S, Chen G, Kuspa A, Shaulsky G.

J Cell Sci. 2017 Dec 1;130(23):4002-4012. doi: 10.1242/jcs.208975. Epub 2017 Oct 16.

4.

Social amoebae trap and kill bacteria by casting DNA nets.

Zhang X, Zhuchenko O, Kuspa A, Soldati T.

Nat Commun. 2016 Mar 1;7:10938. doi: 10.1038/ncomms10938.

5.

Gene Prioritization by Compressive Data Fusion and Chaining.

Žitnik M, Nam EA, Dinh C, Kuspa A, Shaulsky G, Zupan B.

PLoS Comput Biol. 2015 Oct 14;11(10):e1004552. doi: 10.1371/journal.pcbi.1004552. eCollection 2015 Oct.

6.

Allorecognition, via TgrB1 and TgrC1, mediates the transition from unicellularity to multicellularity in the social amoeba Dictyostelium discoideum.

Hirose S, Santhanam B, Katoh-Kurosawa M, Shaulsky G, Kuspa A.

Development. 2015 Oct 15;142(20):3561-70. doi: 10.1242/dev.123281. Epub 2015 Sep 22.

7.

Genomic signatures of cooperation and conflict in the social amoeba.

Ostrowski EA, Shen Y, Tian X, Sucgang R, Jiang H, Qu J, Katoh-Kurasawa M, Brock DA, Dinh C, Lara-Garduno F, Lee SL, Kovar CL, Dinh HH, Korchina V, Jackson L, Patil S, Han Y, Chaboub L, Shaulsky G, Muzny DM, Worley KC, Gibbs RA, Richards S, Kuspa A, Strassmann JE, Queller DC.

Curr Biol. 2015 Jun 15;25(12):1661-5. doi: 10.1016/j.cub.2015.04.059. Epub 2015 Jun 4.

8.

The ABC transporter, AbcB3, mediates cAMP export in D. discoideum development.

Miranda ER, Nam EA, Kuspa A, Shaulsky G.

Dev Biol. 2015 Jan 15;397(2):203-11. doi: 10.1016/j.ydbio.2014.11.006. Epub 2014 Nov 20.

9.

Naringenin inhibits the growth of Dictyostelium and MDCK-derived cysts in a TRPP2 (polycystin-2)-dependent manner.

Waheed A, Ludtmann MH, Pakes N, Robery S, Kuspa A, Dinh C, Baines D, Williams RS, Carew MA.

Br J Pharmacol. 2014 May;171(10):2659-70. doi: 10.1111/bph.12443.

10.

A novel human receptor involved in bitter tastant detection identified using Dictyostelium discoideum.

Robery S, Tyson R, Dinh C, Kuspa A, Noegel AA, Bretschneider T, Andrews PL, Williams RS.

J Cell Sci. 2013 Dec 1;126(Pt 23):5465-76. doi: 10.1242/jcs.136440. Epub 2013 Sep 4.

11.

ABC transporters in Dictyostelium discoideum development.

Miranda ER, Zhuchenko O, Toplak M, Santhanam B, Zupan B, Kuspa A, Shaulsky G.

PLoS One. 2013 Aug 14;8(8):e70040. doi: 10.1371/journal.pone.0070040. eCollection 2013.

12.

Kin recognition protects cooperators against cheaters.

Ho HI, Hirose S, Kuspa A, Shaulsky G.

Curr Biol. 2013 Aug 19;23(16):1590-5. doi: 10.1016/j.cub.2013.06.049. Epub 2013 Aug 1.

13.

Bacterial discrimination by dictyostelid amoebae reveals the complexity of ancient interspecies interactions.

Nasser W, Santhanam B, Miranda ER, Parikh A, Juneja K, Rot G, Dinh C, Chen R, Zupan B, Shaulsky G, Kuspa A.

Curr Biol. 2013 May 20;23(10):862-72. doi: 10.1016/j.cub.2013.04.034. Epub 2013 May 9.

14.

A new social gene in Dictyostelium discoideum, chtB.

Santorelli LA, Kuspa A, Shaulsky G, Queller DC, Strassmann JE.

BMC Evol Biol. 2013 Jan 9;13:4. doi: 10.1186/1471-2148-13-4.

15.

Self-recognition in social amoebae is mediated by allelic pairs of tiger genes.

Hirose S, Benabentos R, Ho HI, Kuspa A, Shaulsky G.

Science. 2011 Jul 22;333(6041):467-70. doi: 10.1126/science.1203903. Epub 2011 Jun 23.

16.

Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum.

Sucgang R, Kuo A, Tian X, Salerno W, Parikh A, Feasley CL, Dalin E, Tu H, Huang E, Barry K, Lindquist E, Shapiro H, Bruce D, Schmutz J, Salamov A, Fey P, Gaudet P, Anjard C, Babu MM, Basu S, Bushmanova Y, van der Wel H, Katoh-Kurasawa M, Dinh C, Coutinho PM, Saito T, Elias M, Schaap P, Kay RR, Henrissat B, Eichinger L, Rivero F, Putnam NH, West CM, Loomis WF, Chisholm RL, Shaulsky G, Strassmann JE, Queller DC, Kuspa A, Grigoriev IV.

Genome Biol. 2011;12(2):R20. doi: 10.1186/gb-2011-12-2-r20. Epub 2011 Feb 28.

17.

Unconventional secretion of AcbA in Dictyostelium discoideum through a vesicular intermediate.

Cabral M, Anjard C, Malhotra V, Loomis WF, Kuspa A.

Eukaryot Cell. 2010 Jul;9(7):1009-17. doi: 10.1128/EC.00337-09. Epub 2010 May 14.

18.

New components of the Dictyostelium PKA pathway revealed by Bayesian analysis of expression data.

Parikh A, Huang E, Dinh C, Zupan B, Kuspa A, Subramanian D, Shaulsky G.

BMC Bioinformatics. 2010 Mar 31;11:163. doi: 10.1186/1471-2105-11-163.

19.

Conserved developmental transcriptomes in evolutionarily divergent species.

Parikh A, Miranda ER, Katoh-Kurasawa M, Fuller D, Rot G, Zagar L, Curk T, Sucgang R, Chen R, Zupan B, Loomis WF, Kuspa A, Shaulsky G.

Genome Biol. 2010;11(3):R35. doi: 10.1186/gb-2010-11-3-r35. Epub 2010 Mar 17.

20.

Cheater-resistance is not futile.

Khare A, Santorelli LA, Strassmann JE, Queller DC, Kuspa A, Shaulsky G.

Nature. 2009 Oct 15;461(7266):980-2. doi: 10.1038/nature08472. Epub 2009 Sep 30.

PMID:
19794414
21.

dictyExpress: a Dictyostelium discoideum gene expression database with an explorative data analysis web-based interface.

Rot G, Parikh A, Curk T, Kuspa A, Shaulsky G, Zupan B.

BMC Bioinformatics. 2009 Aug 25;10:265. doi: 10.1186/1471-2105-10-265.

22.
23.

Polymorphic members of the lag gene family mediate kin discrimination in Dictyostelium.

Benabentos R, Hirose S, Sucgang R, Curk T, Katoh M, Ostrowski EA, Strassmann JE, Queller DC, Zupan B, Shaulsky G, Kuspa A.

Curr Biol. 2009 Apr 14;19(7):567-72. doi: 10.1016/j.cub.2009.02.037. Epub 2009 Mar 12.

24.

Facultative cheater mutants reveal the genetic complexity of cooperation in social amoebae.

Santorelli LA, Thompson CR, Villegas E, Svetz J, Dinh C, Parikh A, Sucgang R, Kuspa A, Strassmann JE, Queller DC, Shaulsky G.

Nature. 2008 Feb 28;451(7182):1107-10. doi: 10.1038/nature06558. Epub 2008 Feb 13.

PMID:
18272966
25.

Developmental commitment in Dictyostelium discoideum.

Katoh M, Chen G, Roberge E, Shaulsky G, Kuspa A.

Eukaryot Cell. 2007 Nov;6(11):2038-45. Epub 2007 Sep 28.

26.

Global transcriptional responses to cisplatin in Dictyostelium discoideum identify potential drug targets.

Van Driessche N, Alexander H, Min J, Kuspa A, Alexander S, Shaulsky G.

Proc Natl Acad Sci U S A. 2007 Sep 25;104(39):15406-11. Epub 2007 Sep 18.

27.

Immune-like phagocyte activity in the social amoeba.

Chen G, Zhuchenko O, Kuspa A.

Science. 2007 Aug 3;317(5838):678-81.

28.

High-throughput analysis of spatio-temporal dynamics in Dictyostelium.

Sawai S, Guan XJ, Kuspa A, Cox EC.

Genome Biol. 2007;8(7):R144.

30.

Restriction enzyme-mediated integration (REMI) mutagenesis.

Kuspa A.

Methods Mol Biol. 2006;346:201-9.

PMID:
16957292
31.

The Genome of Dictyostelium discoideum.

Kuspa A, Loomis WF.

Methods Mol Biol. 2006;346:15-30. Review.

PMID:
16957282
32.

Developmentally regulated DNA methylation in Dictyostelium discoideum.

Katoh M, Curk T, Xu Q, Zupan B, Kuspa A, Shaulsky G.

Eukaryot Cell. 2006 Jan;5(1):18-25.

33.

Comparing the Dictyostelium and Entamoeba genomes reveals an ancient split in the Conosa lineage.

Song J, Xu Q, Olsen R, Loomis WF, Shaulsky G, Kuspa A, Sucgang R.

PLoS Comput Biol. 2005 Dec;1(7):e71. Epub 2005 Dec 16.

34.

Microarray phenotyping in Dictyostelium reveals a regulon of chemotaxis genes.

Booth EO, Van Driessche N, Zhuchenko O, Kuspa A, Shaulsky G.

Bioinformatics. 2005 Dec 15;21(24):4371-7. Epub 2005 Oct 18.

PMID:
16234315
35.
36.

The genome of the social amoeba Dictyostelium discoideum.

Eichinger L, Pachebat JA, Glöckner G, Rajandream MA, Sucgang R, Berriman M, Song J, Olsen R, Szafranski K, Xu Q, Tunggal B, Kummerfeld S, Madera M, Konfortov BA, Rivero F, Bankier AT, Lehmann R, Hamlin N, Davies R, Gaudet P, Fey P, Pilcher K, Chen G, Saunders D, Sodergren E, Davis P, Kerhornou A, Nie X, Hall N, Anjard C, Hemphill L, Bason N, Farbrother P, Desany B, Just E, Morio T, Rost R, Churcher C, Cooper J, Haydock S, van Driessche N, Cronin A, Goodhead I, Muzny D, Mourier T, Pain A, Lu M, Harper D, Lindsay R, Hauser H, James K, Quiles M, Madan Babu M, Saito T, Buchrieser C, Wardroper A, Felder M, Thangavelu M, Johnson D, Knights A, Loulseged H, Mungall K, Oliver K, Price C, Quail MA, Urushihara H, Hernandez J, Rabbinowitsch E, Steffen D, Sanders M, Ma J, Kohara Y, Sharp S, Simmonds M, Spiegler S, Tivey A, Sugano S, White B, Walker D, Woodward J, Winckler T, Tanaka Y, Shaulsky G, Schleicher M, Weinstock G, Rosenthal A, Cox EC, Chisholm RL, Gibbs R, Loomis WF, Platzer M, Kay RR, Williams J, Dear PH, Noegel AA, Barrell B, Kuspa A.

Nature. 2005 May 5;435(7038):43-57.

37.

Epistasis analysis with global transcriptional phenotypes.

Van Driessche N, Demsar J, Booth EO, Hill P, Juvan P, Zupan B, Kuspa A, Shaulsky G.

Nat Genet. 2005 May;37(5):471-7. Epub 2005 Apr 10.

38.

Transcriptional transitions during Dictyostelium spore germination.

Xu Q, Ibarra M, Mahadeo D, Shaw C, Huang E, Kuspa A, Cotter D, Shaulsky G.

Eukaryot Cell. 2004 Oct;3(5):1101-10.

39.

A novel partner for Dictyostelium filamin is an alpha-helical developmentally regulated protein.

Knuth M, Khaire N, Kuspa A, Lu SJ, Schleicher M, Noegel AA.

J Cell Sci. 2004 Oct 1;117(Pt 21):5013-22. Epub 2004 Sep 21.

40.

Periodic signaling controlled by an oscillatory circuit that includes protein kinases ERK2 and PKA.

Maeda M, Lu S, Shaulsky G, Miyazaki Y, Kuwayama H, Tanaka Y, Kuspa A, Loomis WF.

Science. 2004 May 7;304(5672):875-8.

41.

Tissue-specific G1-phase cell-cycle arrest prior to terminal differentiation in Dictyostelium.

Chen G, Shaulsky G, Kuspa A.

Development. 2004 Jun;131(11):2619-30. Epub 2004 May 5.

42.

GenePath: a system for inference of genetic networks and proposal of genetic experiments.

Zupan B, Bratko I, Demsar J, Juvan P, Curk T, Borstnik U, Beck JR, Halter J, Kuspa A, Shaulsky G.

Artif Intell Med. 2003 Sep-Oct;29(1-2):107-30.

PMID:
12957783
43.

TagA, a putative serine protease/ABC transporter of Dictyostelium that is required for cell fate determination at the onset of development.

Good JR, Cabral M, Sharma S, Yang J, Van Driessche N, Shaw CA, Shaulsky G, Kuspa A.

Development. 2003 Jul;130(13):2953-65.

44.

Sequence and structure of the extrachromosomal palindrome encoding the ribosomal RNA genes in Dictyostelium.

Sucgang R, Chen G, Liu W, Lindsay R, Lu J, Muzny D, Shaulsky G, Loomis W, Gibbs R, Kuspa A.

Nucleic Acids Res. 2003 May 1;31(9):2361-8.

45.

GenePath: a system for automated construction of genetic networks from mutant data.

Zupan B, Demsar J, Bratko I, Juvan P, Halter JA, Kuspa A, Shaulsky G.

Bioinformatics. 2003 Feb 12;19(3):383-9.

PMID:
12584124
47.

Role for YakA, cAMP, and protein kinase A in regulation of stress responses of Dictyostelium discoideum cells.

Taminato A, Bagattini R, Gorjão R, Chen G, Kuspa A, Souza GM.

Mol Biol Cell. 2002 Jul;13(7):2266-75.

48.

A transcriptional profile of multicellular development in Dictyostelium discoideum.

Van Driessche N, Shaw C, Katoh M, Morio T, Sucgang R, Ibarra M, Kuwayama H, Saito T, Urushihara H, Maeda M, Takeuchi I, Ochiai H, Eaton W, Tollett J, Halter J, Kuspa A, Tanaka Y, Shaulsky G.

Development. 2002 Apr;129(7):1543-52.

49.

The promise of a protist: the Dictyostelium genome project.

Kuspa A, Sucgang R, Shaulsky G.

Funct Integr Genomics. 2001 Sep;1(5):279-93. Review.

PMID:
11793247
50.

GenePath: a computer program for genetic pathway discovery from mutant data.

Demsar J, Zupan B, Bratko I, Kuspa A, Halter JA, Beck RJ, Shaulsky G.

Stud Health Technol Inform. 2001;84(Pt 2):956-9.

PMID:
11604873

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