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Items: 1 to 50 of 125

1.

New Insights into the Relationship between tRNA Processing and Polyadenylation in Escherichia coli.

Mohanty BK, Kushner SR.

Trends Genet. 2019 Jun;35(6):434-445. doi: 10.1016/j.tig.2019.03.003. Epub 2019 Apr 26. Review.

PMID:
31036345
2.

Analysis of post-transcriptional RNA metabolism in prokaryotes.

Mohanty BK, Kushner SR.

Methods. 2019 Feb 15;155:124-130. doi: 10.1016/j.ymeth.2018.11.006. Epub 2018 Nov 15. Review.

PMID:
30448478
3.

Enzymes Involved in Posttranscriptional RNA Metabolism in Gram-Negative Bacteria.

Mohanty BK, Kushner SR.

Microbiol Spectr. 2018 Apr;6(2). doi: 10.1128/microbiolspec.RWR-0011-2017. Review.

4.

The rph-1-Encoded Truncated RNase PH Protein Inhibits RNase P Maturation of Pre-tRNAs with Short Leader Sequences in the Absence of RppH.

Bowden KE, Wiese NS, Perwez T, Mohanty BK, Kushner SR.

J Bacteriol. 2017 Oct 17;199(22). pii: e00301-17. doi: 10.1128/JB.00301-17. Print 2017 Nov 15.

5.

Regulation of mRNA Decay in Bacteria.

Mohanty BK, Kushner SR.

Annu Rev Microbiol. 2016 Sep 8;70:25-44. doi: 10.1146/annurev-micro-091014-104515. Epub 2016 Jun 1. Review.

PMID:
27297126
6.

Endonucleolytic cleavages by RNase E generate the mature 3' termini of the three proline tRNAs in Escherichia coli.

Mohanty BK, Petree JR, Kushner SR.

Nucleic Acids Res. 2016 Jul 27;44(13):6350-62. doi: 10.1093/nar/gkw517. Epub 2016 Jun 10.

7.

RNase E-based degradosome modulates polyadenylation of mRNAs after Rho-independent transcription terminators in Escherichia coli.

Mildenhall KB, Wiese N, Chung D, Maples VF, Mohanty BK, Kushner SR.

Mol Microbiol. 2016 Aug;101(4):645-55. doi: 10.1111/mmi.13413. Epub 2016 Jun 16.

8.

Polyadenylation in E. coli: a 20 year odyssey.

Kushner SR.

RNA. 2015 Apr;21(4):673-4. doi: 10.1261/rna.049700.115. No abstract available.

9.

Processing of the seven valine tRNAs in Escherichia coli involves novel features of RNase P.

Agrawal A, Mohanty BK, Kushner SR.

Nucleic Acids Res. 2014;42(17):11166-79. doi: 10.1093/nar/gku758. Epub 2014 Sep 2.

10.

In vivo analysis of polyadenylation in prokaryotes.

Mohanty BK, Kushner SR.

Methods Mol Biol. 2014;1125:229-49. doi: 10.1007/978-1-62703-971-0_19.

PMID:
24590793
11.

Deregulation of poly(A) polymerase I in Escherichia coli inhibits protein synthesis and leads to cell death.

Mohanty BK, Kushner SR.

Nucleic Acids Res. 2013 Feb 1;41(3):1757-66. doi: 10.1093/nar/gks1280. Epub 2012 Dec 14.

12.

RNAsnap™: a rapid, quantitative and inexpensive, method for isolating total RNA from bacteria.

Stead MB, Agrawal A, Bowden KE, Nasir R, Mohanty BK, Meagher RB, Kushner SR.

Nucleic Acids Res. 2012 Nov 1;40(20):e156. doi: 10.1093/nar/gks680. Epub 2012 Jul 19.

13.

Polyadenylation helps regulate functional tRNA levels in Escherichia coli.

Mohanty BK, Maples VF, Kushner SR.

Nucleic Acids Res. 2012 May;40(10):4589-603. doi: 10.1093/nar/gks006. Epub 2012 Jan 28.

14.

Bacterial/archaeal/organellar polyadenylation.

Mohanty BK, Kushner SR.

Wiley Interdiscip Rev RNA. 2011 Mar-Apr;2(2):256-76. doi: 10.1002/wrna.51. Review.

15.

Analysis of Escherichia coli RNase E and RNase III activity in vivo using tiling microarrays.

Stead MB, Marshburn S, Mohanty BK, Mitra J, Pena Castillo L, Ray D, van Bakel H, Hughes TR, Kushner SR.

Nucleic Acids Res. 2011 Apr;39(8):3188-203. doi: 10.1093/nar/gkq1242. Epub 2010 Dec 11.

16.

Single amino acid changes in the predicted RNase H domain of Escherichia coli RNase G lead to complementation of RNase E deletion mutants.

Chung DH, Min Z, Wang BC, Kushner SR.

RNA. 2010 Jul;16(7):1371-85. doi: 10.1261/rna.2104810. Epub 2010 May 27.

18.

The response regulator SprE (RssB) modulates polyadenylation and mRNA stability in Escherichia coli.

Carabetta VJ, Mohanty BK, Kushner SR, Silhavy TJ.

J Bacteriol. 2009 Nov;191(22):6812-21. doi: 10.1128/JB.00870-09. Epub 2009 Sep 18.

19.

De novo computational prediction of non-coding RNA genes in prokaryotic genomes.

Tran TT, Zhou F, Marshburn S, Stead M, Kushner SR, Xu Y.

Bioinformatics. 2009 Nov 15;25(22):2897-905. doi: 10.1093/bioinformatics/btp537. Epub 2009 Sep 10.

20.

Analysis of RNA decay, processing, and polyadenylation in Escherichia coli and other prokaryotes.

Mohanty BK, Giladi H, Maples VF, Kushner SR.

Methods Enzymol. 2008;447:3-29. doi: 10.1016/S0076-6879(08)02201-5.

PMID:
19161835
21.

Intragenic suppressors of temperature-sensitive rne mutations lead to the dissociation of RNase E activity on mRNA and tRNA substrates in Escherichia coli.

Perwez T, Hami D, Maples VF, Min Z, Wang BC, Kushner SR.

Nucleic Acids Res. 2008 Sep;36(16):5306-18. doi: 10.1093/nar/gkn476. Epub 2008 Aug 8.

22.
23.

Ribonuclease P processes polycistronic tRNA transcripts in Escherichia coli independent of ribonuclease E.

Mohanty BK, Kushner SR.

Nucleic Acids Res. 2007;35(22):7614-25. Epub 2007 Nov 2.

24.

Messenger RNA Decay.

Kushner SR.

EcoSal Plus. 2007 Apr;2(2). doi: 10.1128/ecosalplus.4.6.4.

PMID:
26443584
25.

The majority of Escherichia coli mRNAs undergo post-transcriptional modification in exponentially growing cells.

Mohanty BK, Kushner SR.

Nucleic Acids Res. 2006;34(19):5695-704. Epub 2006 Oct 12.

26.
27.

RNase Z in Escherichia coli plays a significant role in mRNA decay.

Perwez T, Kushner SR.

Mol Microbiol. 2006 May;60(3):723-37.

28.
29.

The Sm-like protein Hfq regulates polyadenylation dependent mRNA decay in Escherichia coli.

Mohanty BK, Maples VF, Kushner SR.

Mol Microbiol. 2004 Nov;54(4):905-20.

31.
33.

mRNA decay in Escherichia coli comes of age.

Kushner SR.

J Bacteriol. 2002 Sep;184(17):4658-65; discussion 4657. Review. No abstract available.

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39.

RNA methylation under heat shock control.

Bügl H, Fauman EB, Staker BL, Zheng F, Kushner SR, Saper MA, Bardwell JC, Jakob U.

Mol Cell. 2000 Aug;6(2):349-60.

42.

Analysis of the function of Escherichia coli poly(A) polymerase I in RNA metabolism.

Mohanty BK, Kushner SR.

Mol Microbiol. 1999 Dec;34(5):1094-108.

43.

Escherichia coli mrsC is an allele of hflB, encoding a membrane-associated ATPase and protease that is required for mRNA decay.

Wang RF, O'Hara EB, Aldea M, Bargmann CI, Gromley H, Kushner SR.

J Bacteriol. 1998 Apr;180(7):1929-38.

44.

The Escherichia coli mrsC gene is required for cell growth and mRNA decay.

Granger LL, O'Hara EB, Wang RF, Meffen FV, Armstrong K, Yancey SD, Babitzke P, Kushner SR.

J Bacteriol. 1998 Apr;180(7):1920-8.

45.
46.

Conserved motifs II to VI of DNA helicase II from Escherichia coli are all required for biological activity.

Zhang G, Deng E, Baugh LR, Hamilton CM, Maples VF, Kushner SR.

J Bacteriol. 1997 Dec;179(23):7544-50.

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50.

Polyadenylylation helps regulate mRNA decay in Escherichia coli.

O'Hara EB, Chekanova JA, Ingle CA, Kushner ZR, Peters E, Kushner SR.

Proc Natl Acad Sci U S A. 1995 Mar 14;92(6):1807-11.

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