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Items: 17

1.

Schistosoma mansoni: expression of Fes-like tyrosine kinase SmFes in the tegument and terebratorium suggests its involvement in host penetration.

Bahia D, Mortara RA, Kusel JR, Andrade LF, Ludolf F, Kuser PR, Avelar L, Trolet J, Dissous C, Pierce RJ, Oliveira G.

Exp Parasitol. 2007 Jul;116(3):225-32. Epub 2007 Jan 25.

PMID:
17350619
2.

PDB-Metrics: a web tool for exploring the PDB contents.

Fileto R, Kuser PR, Yamagishi ME, Ribeiro AA, Quinalia TG, Franco EH, Mancini AL, Higa RH, Oliveira SR, Santos EH, Vieira FD, Mazoni I, Cruz SA, Neshich G.

Genet Mol Res. 2006 Jun 30;5(2):333-41.

3.

Predicting enzyme class from protein structure using Bayesian classification.

Borro LC, Oliveira SR, Yamagishi ME, Mancini AL, Jardine JG, Mazoni I, Santos EH, Higa RH, Kuser PR, Neshich G.

Genet Mol Res. 2006 Mar 31;5(1):193-202.

4.

Building multiple sequence alignments with a flavor of HSSP alignments.

Higa RH, Cruz SA, Kuser PR, Yamagishi ME, Fileto R, Oliveira SR, Mazoni I, Santos EH, Mancini AL, Neshich G.

Genet Mol Res. 2006 Mar 31;5(1):127-37.

5.

The Diamond STING server.

Neshich G, Borro LC, Higa RH, Kuser PR, Yamagishi ME, Franco EH, Krauchenco JN, Fileto R, Ribeiro AA, Bezerra GB, Velludo TM, Jimenez TS, Furukawa N, Teshima H, Kitajima K, Bava A, Sarai A, Togawa RC, Mancini AL.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W29-35.

6.

STING Report: convenient web-based application for graphic and tabular presentations of protein sequence, structure and function descriptors from the STING database.

Neshich G, Mancini AL, Yamagishi ME, Kuser PR, Fileto R, Pinto IP, Palandrani JF, Krauchenco JN, Baudet C, Montagner AJ, Higa RH.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D269-74.

7.

STING Millennium Suite: integrated software for extensive analyses of 3d structures of proteins and their complexes.

Higa RH, Togawa RC, Montagner AJ, Palandrani JC, Okimoto IK, Kuser PR, Yamagishi ME, Mancini AL, Neshich G.

BMC Bioinformatics. 2004 Aug 9;5:107.

8.

JavaProtein Dossier: a novel web-based data visualization tool for comprehensive analysis of protein structure.

Neshich G, Rocchia W, Mancini AL, Yamagishi ME, Kuser PR, Fileto R, Baudet C, Pinto IP, Montagner AJ, Palandrani JF, Krauchenco JN, Torres RC, Souza S, Togawa RC, Higa RH.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W595-601.

9.

STING Contacts: a web-based application for identification and analysis of amino acid contacts within protein structure and across protein interfaces.

Mancini AL, Higa RH, Oliveira A, Dominiquini F, Kuser PR, Yamagishi ME, Togawa RC, Neshich G.

Bioinformatics. 2004 Sep 1;20(13):2145-7. Epub 2004 Apr 8.

PMID:
15073001
10.

ConSSeq: a web-based application for analysis of amino acid conservation based on HSSP database and within context of structure.

Higa RH, Montagner AJ, Togawa RC, Kuser PR, Yamagishi ME, Mancini AL, Pappas G Jr, Miura RT, Horita LG, Neshich G.

Bioinformatics. 2004 Aug 12;20(12):1983-5. Epub 2004 Mar 25.

PMID:
15044236
11.

Defining 3D residue environment in protein structures using SCORPION and FORMIGA.

Higa RH, Oliveira AG, Horita LG, Miura RT, Inoue MK, Kuser PR, Mancini AL, Yamagishi ME, Togawa RC, Neshich G.

Bioinformatics. 2004 Aug 12;20(12):1989-91. Epub 2004 Mar 25.

PMID:
15044232
13.

STING Millennium: A web-based suite of programs for comprehensive and simultaneous analysis of protein structure and sequence.

Neshich G, Togawa RC, Mancini AL, Kuser PR, Yamagishi ME, Pappas G Jr, Torres WV, Fonseca e Campos T, Ferreira LL, Luna FM, Oliveira AG, Miura RT, Inoue MK, Horita LG, de Souza DF, Dominiquini F, Alvaro A, Lima CS, Ogawa FO, Gomes GB, Palandrani JF, dos Santos GF, de Freitas EM, Mattiuz AR, Costa IC, de Almeida CL, Souza S, Baudet C, Higa RH.

Nucleic Acids Res. 2003 Jul 1;31(13):3386-92.

14.

The X-ray structure of a recombinant major urinary protein at 1.75 A resolution. A comparative study of X-ray and NMR-derived structures.

Kuser PR, Franzoni L, Ferrari E, Spisni A, Polikarpov I.

Acta Crystallogr D Biol Crystallogr. 2001 Dec;57(Pt 12):1863-9. Epub 2001 Nov 21.

PMID:
11717500
15.

The high resolution crystal structure of yeast hexokinase PII with the correct primary sequence provides new insights into its mechanism of action.

Kuser PR, Krauchenco S, Antunes OA, Polikarpov I.

J Biol Chem. 2000 Jul 7;275(27):20814-21. Erratum in: J Biol Chem 2000 Jun 8;276(23):20803.

16.

Crystallization and preliminary crystal analysis of yeast hexokinase PI and PII.

Kuser PR, Golubev AM, Polikarpov I.

Acta Crystallogr D Biol Crystallogr. 1999 Dec;55(Pt 12):2047-8.

PMID:
10666587
17.

Crystallization and preliminary X-ray diffraction studies of piratoxin II, a phospholipase A2 isolated from the venom of Bothrops pirajai.

Lee W, Gon├žalez MC, Ramalheira RM, Kuser PR, Toyama MH, Oliveira B, Giglio JR, Marangoni S, Polikarpov I.

Acta Crystallogr D Biol Crystallogr. 1998 Nov 1;54(Pt 6 Pt 2):1437-9.

PMID:
10089531

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