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Items: 16

1.

Comprehensive profiling of transcriptional networks specific for lactogenic differentiation of HC11 mammary epithelial stem-like cells.

Sornapudi TR, Nayak R, Guthikonda PK, Pasupulati AK, Kethavath S, Uppada V, Mondal S, Yellaboina S, Kurukuti S.

Sci Rep. 2018 Aug 6;8(1):11777. doi: 10.1038/s41598-018-30122-4.

2.

RNA sequencing of murine mammary epithelial stem-like cells (HC11) undergoing lactogenic differentiation and its comparison with embryonic stem cells.

Sornapudi TR, Nayak R, Guthikonda PK, Kethavath S, Yellaboina S, Kurukuti S.

BMC Res Notes. 2018 Apr 11;11(1):241. doi: 10.1186/s13104-018-3351-4.

3.

System-wide coordinates of higher order functions in host-pathogen environment upon Mycobacterium tuberculosis infection.

Parvati Sai Arun PV, Miryala SK, Rana A, Kurukuti S, Akhter Y, Yellaboina S.

Sci Rep. 2018 Mar 22;8(1):5079. doi: 10.1038/s41598-018-22884-8.

4.

Inhibitors of Apoptosis Protein Antagonists (Smac Mimetic Compounds) Control Polarization of Macrophages during Microbial Challenge and Sterile Inflammatory Responses.

Nadella V, Mohanty A, Sharma L, Yellaboina S, Mollenkopf HJ, Mazumdar VB, Palaparthi R, Mylavarapu MB, Maurya R, Kurukuti S, Rudel T, Prakash H.

Front Immunol. 2018 Jan 9;8:1792. doi: 10.3389/fimmu.2017.01792. eCollection 2017.

5.

Developmentally regulated higher-order chromatin interactions orchestrate B cell fate commitment.

Boya R, Yadavalli AD, Nikhat S, Kurukuti S, Palakodeti D, Pongubala JMR.

Nucleic Acids Res. 2017 Nov 2;45(19):11070-11087. doi: 10.1093/nar/gkx722.

6.

Editorial for IC-FCEN 2014.

Gupta AD, Senthilkumaran B, Jagota A, Yenugu S, Manavathi B, Gutti RK, Kurukuti S.

Gen Comp Endocrinol. 2016 Dec 1;239:1-3. doi: 10.1016/j.ygcen.2016.03.015. Epub 2016 Apr 4. No abstract available.

PMID:
27055930
7.

Chromatin looping defines expression of TAL1, its flanking genes, and regulation in T-ALL.

Zhou Y, Kurukuti S, Saffrey P, Vukovic M, Michie AM, Strogantsev R, West AG, Vetrie D.

Blood. 2013 Dec 19;122(26):4199-209. doi: 10.1182/blood-2013-02-483875. Epub 2013 Nov 7.

8.

Sensitive detection of chromatin coassociations using enhanced chromosome conformation capture on chip.

Sexton T, Kurukuti S, Mitchell JA, Umlauf D, Nagano T, Fraser P.

Nat Protoc. 2012 Jun 21;7(7):1335-50. doi: 10.1038/nprot.2012.071.

PMID:
22722369
9.

Human tRNA genes function as chromatin insulators.

Raab JR, Chiu J, Zhu J, Katzman S, Kurukuti S, Wade PA, Haussler D, Kamakaka RT.

EMBO J. 2012 Jan 18;31(2):330-50. doi: 10.1038/emboj.2011.406. Epub 2011 Nov 15.

10.

Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells.

Schoenfelder S, Sexton T, Chakalova L, Cope NF, Horton A, Andrews S, Kurukuti S, Mitchell JA, Umlauf D, Dimitrova DS, Eskiw CH, Luo Y, Wei CL, Ruan Y, Bieker JJ, Fraser P.

Nat Genet. 2010 Jan;42(1):53-61. doi: 10.1038/ng.496. Epub 2009 Dec 13.

11.

The role of transcription factories in large-scale structure and dynamics of interphase chromatin.

Sexton T, Umlauf D, Kurukuti S, Fraser P.

Semin Cell Dev Biol. 2007 Oct;18(5):691-7. Epub 2007 Aug 25. Review.

PMID:
17950637
12.

CTCF regulates asynchronous replication of the imprinted H19/Igf2 domain.

Bergström R, Whitehead J, Kurukuti S, Ohlsson R.

Cell Cycle. 2007 Feb 15;6(4):450-4. Epub 2007 Feb 12.

PMID:
17329968
13.

Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions.

Zhao Z, Tavoosidana G, Sjölinder M, Göndör A, Mariano P, Wang S, Kanduri C, Lezcano M, Sandhu KS, Singh U, Pant V, Tiwari V, Kurukuti S, Ohlsson R.

Nat Genet. 2006 Nov;38(11):1341-7. Epub 2006 Oct 8.

PMID:
17033624
14.

CTCF binding at the H19 imprinting control region mediates maternally inherited higher-order chromatin conformation to restrict enhancer access to Igf2.

Kurukuti S, Tiwari VK, Tavoosidana G, Pugacheva E, Murrell A, Zhao Z, Lobanenkov V, Reik W, Ohlsson R.

Proc Natl Acad Sci U S A. 2006 Jul 11;103(28):10684-9. Epub 2006 Jun 30.

15.

CTCF binding and higher order chromatin structure of the H19 locus are maintained in mitotic chromatin.

Burke LJ, Zhang R, Bartkuhn M, Tiwari VK, Tavoosidana G, Kurukuti S, Weth C, Leers J, Galjart N, Ohlsson R, Renkawitz R.

EMBO J. 2005 Sep 21;24(18):3291-300. Epub 2005 Aug 18.

16.

Mutation of a single CTCF target site within the H19 imprinting control region leads to loss of Igf2 imprinting and complex patterns of de novo methylation upon maternal inheritance.

Pant V, Kurukuti S, Pugacheva E, Shamsuddin S, Mariano P, Renkawitz R, Klenova E, Lobanenkov V, Ohlsson R.

Mol Cell Biol. 2004 Apr;24(8):3497-504.

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