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Items: 1 to 50 of 123

1.

Atypical clinical presentation of mechanical small bowel obstruction with superior mesenteric vein occlusion caused by a retained free intraperitoneal staple after laparoscopic appendectomy: A case report.

Tamura K, Nakayama H, Kono H, Kuroki R, Maeyama R, Yamamoto H, Ueki T, Okido M, Ichimiya H.

Asian J Endosc Surg. 2020 Mar 17. doi: 10.1111/ases.12797. [Epub ahead of print]

PMID:
32185867
2.

Genetically fused charged peptides induce rapid crystallization of proteins.

Minamihata K, Tsukamoto K, Adachi M, Shimizu R, Mishina M, Kuroki R, Nagamune T.

Chem Commun (Camb). 2020 Apr 7;56(27):3891-3894. doi: 10.1039/c9cc09529b. Epub 2020 Mar 5.

PMID:
32134050
3.

Variations in Care for Breastfed Infants Admitted to US Children's Hospitals: A Multicenter Survey of Inpatient Providers.

Bochner RE, Kuroki R, Lui K, Russell CJ, Rackovsky E, Piper L, Ban K, Yang K, Mandal P, Mackintosh L, Mirzaian CB, Gross E.

Hosp Pediatr. 2020 Jan;10(1):70-75. doi: 10.1542/hpeds.2019-0199. Epub 2019 Dec 11.

PMID:
31826917
4.

Correction to "Anomalous Water Molecules and Mechanistic Effects of Water Nanotube Clusters Confined to Molecular Porous Crystals".

Tadokoro M, Ohhara T, Ohata Y, Suda T, Miyasato Y, Yamada T, Kikuchi T, Tanaka I, Kurihara K, Oguni M, Nakasuji K, Yamamuro O, Kuroki R.

J Phys Chem B. 2019 May 9;123(18):4157. doi: 10.1021/acs.jpcb.9b03433. Epub 2019 Apr 26. No abstract available.

PMID:
31026166
5.

Impairment of tissue repair in pneumonia due to β-cell deficiency: role of endoplasmic reticulum stress in alveolar macrophages.

Yamashita Y, Kuroki R, Takaki M, Tanaka T, Senba M, Morimoto K, Amano H.

BMC Res Notes. 2019 Mar 22;12(1):160. doi: 10.1186/s13104-019-4209-0.

6.

The non-glycosylated N-terminal domain of human thrombopoietin is a molten globule under native conditions.

Arai S, Shibazaki C, Adachi M, Maeda Y, Tahara T, Kato T, Miyazaki H, Kuroki R.

FEBS J. 2019 May;286(9):1717-1733. doi: 10.1111/febs.14765. Epub 2019 Feb 5.

PMID:
30675759
7.

Extended structure of pleiotropic DNA repair-promoting protein PprA from Deinococcus radiodurans.

Adachi M, Shimizu R, Shibazaki C, Satoh K, Fujiwara S, Arai S, Narumi I, Kuroki R.

FASEB J. 2019 Mar;33(3):3647-3658. doi: 10.1096/fj.201801506R. Epub 2018 Nov 27.

PMID:
30481062
8.

Crystal structure of glycosyltrehalose synthase from Sulfolobus shibatae DSM5389.

Okazaki N, Blaber M, Kuroki R, Tamada T.

Acta Crystallogr F Struct Biol Commun. 2018 Nov 1;74(Pt 11):741-746. doi: 10.1107/S2053230X1801453X. Epub 2018 Oct 31.

PMID:
30387780
9.

Hydration Structures of the Human Protein Kinase CK2α Clarified by Joint Neutron and X-ray Crystallography.

Shibazaki C, Arai S, Shimizu R, Saeki M, Kinoshita T, Ostermann A, Schrader TE, Kurosaki Y, Sunami T, Kuroki R, Adachi M.

J Mol Biol. 2018 Dec 7;430(24):5094-5104. doi: 10.1016/j.jmb.2018.09.018. Epub 2018 Oct 23.

PMID:
30359582
10.

Identification of Highly Potent Human Immunodeficiency Virus Type-1 Protease Inhibitors against Lopinavir and Darunavir Resistant Viruses from Allophenylnorstatine-Based Peptidomimetics with P2 Tetrahydrofuranylglycine.

Hidaka K, Kimura T, Sankaranarayanan R, Wang J, McDaniel KF, Kempf DJ, Kameoka M, Adachi M, Kuroki R, Nguyen JT, Hayashi Y, Kiso Y.

J Med Chem. 2018 Jun 28;61(12):5138-5153. doi: 10.1021/acs.jmedchem.7b01709. Epub 2018 Jun 11.

PMID:
29852069
11.

Structural Basis of Single-Nucleotide Polymorphisms in Cytochrome P450 2C9.

Maekawa K, Adachi M, Matsuzawa Y, Zhang Q, Kuroki R, Saito Y, Shah MB.

Biochemistry. 2017 Oct 17;56(41):5476-5480. doi: 10.1021/acs.biochem.7b00795. Epub 2017 Oct 3.

12.

Neutron structure of the T26H mutant of T4 phage lysozyme provides insight into the catalytic activity of the mutant enzyme and how it differs from that of wild type.

Hiromoto T, Meilleur F, Shimizu R, Shibazaki C, Adachi M, Tamada T, Kuroki R.

Protein Sci. 2017 Oct;26(10):1953-1963. doi: 10.1002/pro.3230. Epub 2017 Jul 25.

13.

Comparison of productive and reproductive performance and hair cortisol levels between Brown Swiss cross-bred and Holstein cows housed in the same barn.

Endo N, Kuroki R, Tanaka T.

Anim Sci J. 2017 Oct;88(10):1506-1512. doi: 10.1111/asj.12828. Epub 2017 May 26.

PMID:
28548294
14.

Clinical bandings of Patient-Oriented Eczema Measure scores among Japanese patients with atopic eczema.

Yasukochi Y, Kido-Nakahara M, Nakahara T, Kuroki R, Koga T, Mashino T, Kurihara Y, Furue M.

Br J Dermatol. 2017 Nov;177(5):e211-e212. doi: 10.1111/bjd.15599. Epub 2017 Oct 25. No abstract available.

PMID:
28429820
15.

An insight into the thermodynamic characteristics of human thrombopoietin complexation with TN1 antibody.

Arai S, Shibazaki C, Adachi M, Honjo E, Tamada T, Maeda Y, Tahara T, Kato T, Miyazaki H, Blaber M, Kuroki R.

Protein Sci. 2016 Oct;25(10):1786-96. doi: 10.1002/pro.2985. Epub 2016 Jul 25.

16.

Case 2: Ataxia, Slurred Speech, and Facial Droop in a 3-year-old Girl.

Kuroki R, Desai J.

Pediatr Rev. 2016 Jan;37(1):42-4. doi: 10.1542/pir.2015-0095. No abstract available.

PMID:
26729782
17.

TRAIL-R2 Superoligomerization Induced by Human Monoclonal Agonistic Antibody KMTR2.

Tamada T, Shinmi D, Ikeda M, Yonezawa Y, Kataoka S, Kuroki R, Mori E, Motoki K.

Sci Rep. 2015 Dec 17;5:17936. doi: 10.1038/srep17936.

18.

The catalytic mechanism of decarboxylative hydroxylation of salicylate hydroxylase revealed by crystal structure analysis at 2.5 Å resolution.

Uemura T, Kita A, Watanabe Y, Adachi M, Kuroki R, Morimoto Y.

Biochem Biophys Res Commun. 2016 Jan 8;469(2):158-63. doi: 10.1016/j.bbrc.2015.11.087. Epub 2015 Nov 23.

PMID:
26616054
19.

Nucleoside Diphosphate Kinase from Psychrophilic Pseudoalteromonas sp. AS-131 Isolated from Antarctic Ocean.

Yonezawa Y, Nagayama A, Tokunaga H, Ishibashi M, Arai S, Kuroki R, Watanabe K, Arakawa T, Tokunaga M.

Protein J. 2015 Aug;34(4):275-83. doi: 10.1007/s10930-015-9623-0.

PMID:
26242868
20.

Insights into the Proton Transfer Mechanism of a Bilin Reductase PcyA Following Neutron Crystallography.

Unno M, Ishikawa-Suto K, Kusaka K, Tamada T, Hagiwara Y, Sugishima M, Wada K, Yamada T, Tomoyori K, Hosoya T, Tanaka I, Niimura N, Kuroki R, Inaka K, Ishihara M, Fukuyama K.

J Am Chem Soc. 2015 Apr 29;137(16):5452-60. doi: 10.1021/jacs.5b00645. Epub 2015 Apr 15.

PMID:
25872660
21.

Structure of a highly acidic β-lactamase from the moderate halophile Chromohalobacter sp. 560 and the discovery of a Cs(+)-selective binding site.

Arai S, Yonezawa Y, Okazaki N, Matsumoto F, Shibazaki C, Shimizu R, Yamada M, Adachi M, Tamada T, Kawamoto M, Tokunaga H, Ishibashi M, Blaber M, Tokunaga M, Kuroki R.

Acta Crystallogr D Biol Crystallogr. 2015 Mar;71(Pt 3):541-54. doi: 10.1107/S1399004714027734. Epub 2015 Feb 26.

22.

Structural basis for acceptor-substrate recognition of UDP-glucose: anthocyanidin 3-O-glucosyltransferase from Clitoria ternatea.

Hiromoto T, Honjo E, Noda N, Tamada T, Kazuma K, Suzuki M, Blaber M, Kuroki R.

Protein Sci. 2015 Mar;24(3):395-407. doi: 10.1002/pro.2630. Epub 2015 Jan 28.

23.

Interaction of double-stranded DNA with polymerized PprA protein from Deinococcus radiodurans.

Adachi M, Hirayama H, Shimizu R, Satoh K, Narumi I, Kuroki R.

Protein Sci. 2014 Oct;23(10):1349-58. doi: 10.1002/pro.2519. Epub 2014 Aug 4.

24.

Structural characteristics of alkaline phosphatase from the moderately halophilic bacterium Halomonas sp. 593.

Arai S, Yonezawa Y, Ishibashi M, Matsumoto F, Adachi M, Tamada T, Tokunaga H, Blaber M, Tokunaga M, Kuroki R.

Acta Crystallogr D Biol Crystallogr. 2014 Mar;70(Pt 3):811-20. doi: 10.1107/S1399004713033609. Epub 2014 Feb 22.

25.

[Presumption of the energy-spectrum of high-energy electron beam based on the beta-distribution model].

Kato H, Hayashi N, Kuroki R, Adachi Y, Suzuki S.

Nihon Hoshasen Gijutsu Gakkai Zasshi. 2013 Dec;69(12):1387-93. Japanese.

26.

High-resolution crystal structure of copper amine oxidase from Arthrobacter globiformis: assignment of bound diatomic molecules as O2.

Murakawa T, Hayashi H, Sunami T, Kurihara K, Tamada T, Kuroki R, Suzuki M, Tanizawa K, Okajima T.

Acta Crystallogr D Biol Crystallogr. 2013 Dec;69(Pt 12):2483-94. doi: 10.1107/S0907444913023196. Epub 2013 Nov 19.

PMID:
24311589
27.

Creation and structure determination of an artificial protein with three complete sequence repeats.

Adachi M, Shimizu R, Kuroki R, Blaber M.

J Synchrotron Radiat. 2013 Nov;20(Pt 6):953-7. doi: 10.1107/S0909049513022164. Epub 2013 Oct 8.

28.

Crystal structure of UDP-glucose:anthocyanidin 3-O-glucosyltransferase from Clitoria ternatea.

Hiromoto T, Honjo E, Tamada T, Noda N, Kazuma K, Suzuki M, Kuroki R.

J Synchrotron Radiat. 2013 Nov;20(Pt 6):894-8. doi: 10.1107/S0909049513020712. Epub 2013 Sep 29.

29.

Elucidations of the catalytic cycle of NADH-cytochrome b5 reductase by X-ray crystallography: new insights into regulation of efficient electron transfer.

Yamada M, Tamada T, Takeda K, Matsumoto F, Ohno H, Kosugi M, Takaba K, Shoyama Y, Kimura S, Kuroki R, Miki K.

J Mol Biol. 2013 Nov 15;425(22):4295-306. doi: 10.1016/j.jmb.2013.06.010. Epub 2013 Jul 2.

PMID:
23831226
30.

Crystallization and preliminary X-ray diffraction analysis of tetrathionate hydrolase from Acidithiobacillus ferrooxidans.

Kanao T, Kosaka M, Yoshida K, Nakayama H, Tamada T, Kuroki R, Yamada H, Takada J, Kamimura K.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Jun;69(Pt 6):692-4. doi: 10.1107/S1744309113013419. Epub 2013 May 29.

31.

Neutron and X-ray crystallographic analysis of the human α-thrombin-bivalirudin complex at pD 5.0: protonation states and hydration structure of the enzyme-product complex.

Yamada T, Kurihara K, Ohnishi Y, Tamada T, Tomoyori K, Masumi K, Tanaka I, Kuroki R, Niimura N.

Biochim Biophys Acta. 2013 Aug;1834(8):1532-8. doi: 10.1016/j.bbapap.2013.05.014. Epub 2013 May 25.

PMID:
23712263
32.

Decontamination of outdoor school swimming pools in Fukushima after the nuclear accident in March 2011.

Saegusa J, Kurikami H, Yasuda R, Kurihara K, Arai S, Kuroki R, Matsuhashi S, Ozawa T, Goto H, Takano T, Mitamura H, Nagano T, Naganawa H, Yoshida Z, Funaki H, Tokizawa T, Nakayama S.

Health Phys. 2013 Mar;104(3):243-50. doi: 10.1097/HP.0b013e318277b3ee.

PMID:
23361418
33.

Seven cysteine-deficient mutants depict the interplay between thermal and chemical stabilities of individual cysteine residues in mitogen-activated protein kinase c-Jun N-terminal kinase 1.

Nakaniwa T, Fukada H, Inoue T, Gouda M, Nakai R, Kirii Y, Adachi M, Tamada T, Segawa S, Kuroki R, Tada T, Kinoshita T.

Biochemistry. 2012 Oct 23;51(42):8410-21. doi: 10.1021/bi300918w. Epub 2012 Oct 11.

PMID:
23020677
34.

Structure and function of ∆1-tetrahydrocannabinolic acid (THCA) synthase, the enzyme controlling the psychoactivity of Cannabis sativa.

Shoyama Y, Tamada T, Kurihara K, Takeuchi A, Taura F, Arai S, Blaber M, Shoyama Y, Morimoto S, Kuroki R.

J Mol Biol. 2012 Oct 12;423(1):96-105. doi: 10.1016/j.jmb.2012.06.030. Epub 2012 Jul 2.

PMID:
22766313
35.

Reduction of salt-requirement of halophilic nucleoside diphosphate kinase by engineering S-S bond.

Ishibashi M, Uchino M, Arai S, Kuroki R, Arakawa T, Tokunaga M.

Arch Biochem Biophys. 2012 Sep 1;525(1):47-52. doi: 10.1016/j.abb.2012.05.021. Epub 2012 Jun 5.

PMID:
22683473
36.

Direct evidence of generation and accumulation of β-sheet-rich prion protein in scrapie-infected neuroblastoma cells with human IgG1 antibody specific for β-form prion protein.

Kubota T, Hamazoe Y, Hashiguchi S, Ishibashi D, Akasaka K, Nishida N, Katamine S, Sakaguchi S, Kuroki R, Nakashima T, Sugimura K.

J Biol Chem. 2012 Apr 20;287(17):14023-39. doi: 10.1074/jbc.M111.318352. Epub 2012 Feb 22.

37.

Substrate recognition mechanism of a glycosyltrehalose trehalohydrolase from Sulfolobus solfataricus KM1.

Okazaki N, Tamada T, Feese MD, Kato M, Miura Y, Komeda T, Kobayashi K, Kondo K, Blaber M, Kuroki R.

Protein Sci. 2012 Apr;21(4):539-52. doi: 10.1002/pro.2039. Epub 2012 Feb 28.

38.

A structural mechanism for dimeric to tetrameric oligomer conversion in Halomonas sp. nucleoside diphosphate kinase.

Arai S, Yonezawa Y, Okazaki N, Matsumoto F, Tamada T, Tokunaga H, Ishibashi M, Blaber M, Tokunaga M, Kuroki R.

Protein Sci. 2012 Apr;21(4):498-510. doi: 10.1002/pro.2032. Epub 2012 Mar 9.

39.

Crystallization and preliminary neutron diffraction studies of ADP-ribose pyrophosphatase-I from Thermus thermophilus HB8.

Okazaki N, Adachi M, Tamada T, Kurihara K, Ooga T, Kamiya N, Kuramitsu S, Kuroki R.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Jan 1;68(Pt 1):49-52. doi: 10.1107/S1744309111044551. Epub 2011 Dec 24.

40.

Molecular characteristics of outbreaks of nosocomial infection with influenza A/H3N2 virus variants.

Oguma T, Saito R, Masaki H, Hoshino K, Zaraket H, Suzuki Y, Caperig-Dapat I, Dapat C, Baranovich T, Kuroki R, Makimoto Y, Shirahige Y, Asoh N, Degawa S, Ishikawa H, Kageura H, Hosoi M, Suzuki H.

Infect Control Hosp Epidemiol. 2011 Mar;32(3):267-75. doi: 10.1086/658671.

PMID:
21460512
41.

Identification of erythroid progenitors induced by erythropoietic activity in Xenopus laevis.

Nogawa-Kosaka N, Sugai T, Nagasawa K, Tanizaki Y, Meguro M, Aizawa Y, Maekawa S, Adachi M, Kuroki R, Kato T.

J Exp Biol. 2011 Mar 15;214(Pt 6):921-7. doi: 10.1242/jeb.050286.

42.

X-ray and neutron protein crystallographic analysis of the trypsin-BPTI complex.

Kawamura K, Yamada T, Kurihara K, Tamada T, Kuroki R, Tanaka I, Takahashi H, Niimura N.

Acta Crystallogr D Biol Crystallogr. 2011 Feb;67(Pt 2):140-8. doi: 10.1107/S0907444910053382. Epub 2011 Jan 15.

PMID:
21245536
43.

Towards investigation of the inhibitor-recognition mechanisms of drug-target proteins by neutron crystallography.

Kuroki R, Okazaki N, Adachi M, Ohhara T, Kurihara K, Tamada T.

Acta Crystallogr D Biol Crystallogr. 2010 Nov;66(Pt 11):1126-30. doi: 10.1107/S0907444910034967. Epub 2010 Oct 20.

PMID:
21041926
44.

Effectiveness of pneumococcal polysaccharide vaccine against pneumonia and cost analysis for the elderly who receive seasonal influenza vaccine in Japan.

Kawakami K, Ohkusa Y, Kuroki R, Tanaka T, Koyama K, Harada Y, Iwanaga K, Yamaryo T, Oishi K.

Vaccine. 2010 Oct 8;28(43):7063-9. doi: 10.1016/j.vaccine.2010.08.010. Epub 2010 Aug 17.

PMID:
20723631
45.

[Collaborative use of neutron and X-ray for determination of drug target proteins].

Kuroki R, Tamada T, Kurihara K, Ohhara T, Adachi M.

Yakugaku Zasshi. 2010 May;130(5):657-64. Review. Japanese.

46.

[Structure analysis of drug target proteins by neutron diffraction].

Adachi M, Kuroki R.

Tanpakushitsu Kakusan Koso. 2010 Jan;55(1):82-7. Review. Japanese. No abstract available.

PMID:
20058711
47.

Small-sized human immunodeficiency virus type-1 protease inhibitors containing allophenylnorstatine to explore the S2' pocket.

Hidaka K, Kimura T, Abdel-Rahman HM, Nguyen JT, McDaniel KF, Kohlbrenner WE, Molla A, Adachi M, Tamada T, Kuroki R, Katsuki N, Tanaka Y, Matsumoto H, Wang J, Hayashi Y, Kempf DJ, Kiso Y.

J Med Chem. 2009 Dec 10;52(23):7604-17. doi: 10.1021/jm9005115.

PMID:
19954246
48.

Engineering an improved crystal contact across a solvent-mediated interface of human fibroblast growth factor 1.

Meher AK, Blaber SI, Lee J, Honjo E, Kuroki R, Blaber M.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Nov 1;65(Pt 11):1136-40. doi: 10.1107/S1744309109036987. Epub 2009 Oct 30.

49.

[Survey of food poisoning incidents in Japan due to ingestion of marine boxfish and their toxicity].

Taniyama S, Sagara T, Nishio S, Kuroki R, Asakawa M, Noguchi T, Yamasaki S, Takatani T, Arakawa O.

Shokuhin Eiseigaku Zasshi. 2009 Oct;50(5):270-7. Japanese.

50.

A neutron crystallographic analysis of T6 porcine insulin at 2.1 A resolution.

Iwai W, Yamada T, Kurihara K, Ohnishi Y, Kobayashi Y, Tanaka I, Takahashi H, Kuroki R, Tamada T, Niimura N.

Acta Crystallogr D Biol Crystallogr. 2009 Oct;65(Pt 10):1042-50. doi: 10.1107/S090744490902770X. Epub 2009 Sep 16.

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