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Items: 31

1.

The neuroactive potential of the human gut microbiota in quality of life and depression.

Valles-Colomer M, Falony G, Darzi Y, Tigchelaar EF, Wang J, Tito RY, Schiweck C, Kurilshikov A, Joossens M, Wijmenga C, Claes S, Van Oudenhove L, Zhernakova A, Vieira-Silva S, Raes J.

Nat Microbiol. 2019 Feb 4. doi: 10.1038/s41564-018-0337-x. [Epub ahead of print]

PMID:
30718848
2.

Gut microbiota composition and functional changes in inflammatory bowel disease and irritable bowel syndrome.

Vich Vila A, Imhann F, Collij V, Jankipersadsing SA, Gurry T, Mujagic Z, Kurilshikov A, Bonder MJ, Jiang X, Tigchelaar EF, Dekens J, Peters V, Voskuil MD, Visschedijk MC, van Dullemen HM, Keszthelyi D, Swertz MA, Franke L, Alberts R, Festen EAM, Dijkstra G, Masclee AAM, Hofker MH, Xavier RJ, Alm EJ, Fu J, Wijmenga C, Jonkers DMAE, Zhernakova A, Weersma RK.

Sci Transl Med. 2018 Dec 19;10(472). pii: eaap8914. doi: 10.1126/scitranslmed.aap8914.

PMID:
30567928
3.

Shared gut, but distinct oral microbiota composition in primary Sjögren's syndrome and systemic lupus erythematosus.

van der Meulen TA, Harmsen HJM, Vila AV, Kurilshikov A, Liefers SC, Zhernakova A, Fu J, Wijmenga C, Weersma RK, de Leeuw K, Bootsma H, Spijkervet FKL, Vissink A, Kroese FGM.

J Autoimmun. 2019 Feb;97:77-87. doi: 10.1016/j.jaut.2018.10.009. Epub 2018 Nov 9.

4.

Analysis of 1135 gut metagenomes identifies sex-specific resistome profiles.

Sinha T, Vich Vila A, Garmaeva S, Jankipersadsing SA, Imhann F, Collij V, Bonder MJ, Jiang X, Gurry T, Alm EJ, D'Amato M, Weersma RK, Scherjon S, Wijmenga C, Fu J, Kurilshikov A, Zhernakova A.

Gut Microbes. 2018 Oct 29:1-9. doi: 10.1080/19490976.2018.1528822. [Epub ahead of print]

PMID:
30373468
5.

Author Correction: Individual variations in cardiovascular-disease-related protein levels are driven by genetics and gut microbiome.

Zhernakova DV, Le TH, Kurilshikov A, Atanasovska B, Bonder MJ, Sanna S, Claringbould A, Võsa U, Deelen P, Franke L, de Boer RA, Kuipers F, Netea MG, Hofker MH, Wijmenga C, Zhernakova A, Fu J; LifeLines cohort study; BIOS consortium.

Nat Genet. 2018 Dec;50(12):1752. doi: 10.1038/s41588-018-0275-9.

PMID:
30341443
6.

Individual variations in cardiovascular-disease-related protein levels are driven by genetics and gut microbiome.

Zhernakova DV, Le TH, Kurilshikov A, Atanasovska B, Bonder MJ, Sanna S, Claringbould A, Võsa U, Deelen P, Franke L, de Boer RA, Kuipers F, Netea MG, Hofker MH, Wijmenga C, Zhernakova A, Fu J; LifeLines cohort study; BIOS consortium.

Nat Genet. 2018 Nov;50(11):1524-1532. doi: 10.1038/s41588-018-0224-7. Epub 2018 Sep 24. Erratum in: Nat Genet. 2018 Oct 19;:.

PMID:
30250126
7.

Role of gut microbiota in chronic low-grade inflammation as potential driver for atherosclerotic cardiovascular disease: a systematic review of human studies.

van den Munckhof ICL, Kurilshikov A, Ter Horst R, Riksen NP, Joosten LAB, Zhernakova A, Fu J, Keating ST, Netea MG, de Graaf J, Rutten JHW.

Obes Rev. 2018 Dec;19(12):1719-1734. doi: 10.1111/obr.12750. Epub 2018 Aug 24.

PMID:
30144260
8.

Meta-analysis of human genome-microbiome association studies: the MiBioGen consortium initiative.

Wang J, Kurilshikov A, Radjabzadeh D, Turpin W, Croitoru K, Bonder MJ, Jackson MA, Medina-Gomez C, Frost F, Homuth G, Rühlemann M, Hughes D, Kim HN; MiBioGen Consortium Initiative, Spector TD, Bell JT, Steves CJ, Timpson N, Franke A, Wijmenga C, Meyer K, Kacprowski T, Franke L, Paterson AD, Raes J, Kraaij R, Zhernakova A.

Microbiome. 2018 Jun 8;6(1):101. doi: 10.1186/s40168-018-0479-3.

9.

Microbiome Responses to an Uncontrolled Short-Term Diet Intervention in the Frame of the Citizen Science Project.

Klimenko NS, Tyakht AV, Popenko AS, Vasiliev AS, Altukhov IA, Ischenko DS, Shashkova TI, Efimova DA, Nikogosov DA, Osipenko DA, Musienko SV, Selezneva KS, Baranova A, Kurilshikov AM, Toshchakov SM, Korzhenkov AA, Samarov NI, Shevchenko MA, Tepliuk AV, Alexeev DG.

Nutrients. 2018 May 8;10(5). pii: E576. doi: 10.3390/nu10050576.

10.

Isolation and characterization of a group of new Proteus bacteriophages.

Morozova V, Kozlova Y, Shedko E, Babkin I, Kurilshikov A, Bokovaya O, Bardashova A, Yunusova A, Tikunov A, Tupikin A, Ushakova T, Ryabchikova E, Tikunova N.

Arch Virol. 2018 Aug;163(8):2189-2197. doi: 10.1007/s00705-018-3853-3. Epub 2018 May 2.

PMID:
29721709
11.

Environment dominates over host genetics in shaping human gut microbiota.

Rothschild D, Weissbrod O, Barkan E, Kurilshikov A, Korem T, Zeevi D, Costea PI, Godneva A, Kalka IN, Bar N, Shilo S, Lador D, Vila AV, Zmora N, Pevsner-Fischer M, Israeli D, Kosower N, Malka G, Wolf BC, Avnit-Sagi T, Lotan-Pompan M, Weinberger A, Halpern Z, Carmi S, Fu J, Wijmenga C, Zhernakova A, Elinav E, Segal E.

Nature. 2018 Mar 8;555(7695):210-215. doi: 10.1038/nature25973. Epub 2018 Feb 28.

PMID:
29489753
12.

Detection of stable community structures within gut microbiota co-occurrence networks from different human populations.

Jackson MA, Bonder MJ, Kuncheva Z, Zierer J, Fu J, Kurilshikov A, Wijmenga C, Zhernakova A, Bell JT, Spector TD, Steves CJ.

PeerJ. 2018 Feb 7;6:e4303. doi: 10.7717/peerj.4303. eCollection 2018.

13.

The systemic tumor response to RNase A treatment affects the expression of genes involved in maintaining cell malignancy.

Mironova N, Patutina O, Brenner E, Kurilshikov A, Vlassov V, Zenkova M.

Oncotarget. 2017 Aug 12;8(45):78796-78810. doi: 10.18632/oncotarget.20228. eCollection 2017 Oct 3.

14.

Host Genetics and Gut Microbiome: Challenges and Perspectives.

Kurilshikov A, Wijmenga C, Fu J, Zhernakova A.

Trends Immunol. 2017 Sep;38(9):633-647. doi: 10.1016/j.it.2017.06.003. Epub 2017 Jun 29. Review.

PMID:
28669638
15.

Alteration of the exDNA profile in blood serum of LLC-bearing mice under the decrease of tumour invasion potential by bovine pancreatic DNase I treatment.

Alekseeva LA, Mironova NL, Brenner EV, Kurilshikov AM, Patutina OA, Zenkova MA.

PLoS One. 2017 Feb 21;12(2):e0171988. doi: 10.1371/journal.pone.0171988. eCollection 2017.

16.

Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity.

Schirmer M, Smeekens SP, Vlamakis H, Jaeger M, Oosting M, Franzosa EA, Horst RT, Jansen T, Jacobs L, Bonder MJ, Kurilshikov A, Fu J, Joosten LAB, Zhernakova A, Huttenhower C, Wijmenga C, Netea MG, Xavier RJ.

Cell. 2016 Dec 15;167(7):1897. doi: 10.1016/j.cell.2016.11.046. No abstract available.

17.

Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity.

Schirmer M, Smeekens SP, Vlamakis H, Jaeger M, Oosting M, Franzosa EA, Ter Horst R, Jansen T, Jacobs L, Bonder MJ, Kurilshikov A, Fu J, Joosten LAB, Zhernakova A, Huttenhower C, Wijmenga C, Netea MG, Xavier RJ.

Cell. 2016 Nov 3;167(4):1125-1136.e8. doi: 10.1016/j.cell.2016.10.020. Erratum in: Cell. 2016 Dec 15;167(7):1897. Cell. 2016 Dec 15;167(7):1897.

18.

The effect of host genetics on the gut microbiome.

Bonder MJ, Kurilshikov A, Tigchelaar EF, Mujagic Z, Imhann F, Vila AV, Deelen P, Vatanen T, Schirmer M, Smeekens SP, Zhernakova DV, Jankipersadsing SA, Jaeger M, Oosting M, Cenit MC, Masclee AA, Swertz MA, Li Y, Kumar V, Joosten L, Harmsen H, Weersma RK, Franke L, Hofker MH, Xavier RJ, Jonkers D, Netea MG, Wijmenga C, Fu J, Zhernakova A.

Nat Genet. 2016 Nov;48(11):1407-1412. doi: 10.1038/ng.3663. Epub 2016 Oct 3.

PMID:
27694959
19.

Lytic bacteriophage PM16 specific for Proteus mirabilis: a novel member of the genus Phikmvvirus.

Morozova V, Kozlova Y, Shedko E, Kurilshikov A, Babkin I, Tupikin A, Yunusova A, Chernonosov A, Baykov I, Кondratov I, Kabilov M, Ryabchikova E, Vlassov V, Tikunova N.

Arch Virol. 2016 Sep;161(9):2457-72. doi: 10.1007/s00705-016-2944-2. Epub 2016 Jun 28.

PMID:
27350061
20.

Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity.

Zhernakova A, Kurilshikov A, Bonder MJ, Tigchelaar EF, Schirmer M, Vatanen T, Mujagic Z, Vila AV, Falony G, Vieira-Silva S, Wang J, Imhann F, Brandsma E, Jankipersadsing SA, Joossens M, Cenit MC, Deelen P, Swertz MA; LifeLines cohort study, Weersma RK, Feskens EJ, Netea MG, Gevers D, Jonkers D, Franke L, Aulchenko YS, Huttenhower C, Raes J, Hofker MH, Xavier RJ, Wijmenga C, Fu J.

Science. 2016 Apr 29;352(6285):565-9. doi: 10.1126/science.aad3369. Epub 2016 Apr 28.

21.

Population-level analysis of gut microbiome variation.

Falony G, Joossens M, Vieira-Silva S, Wang J, Darzi Y, Faust K, Kurilshikov A, Bonder MJ, Valles-Colomer M, Vandeputte D, Tito RY, Chaffron S, Rymenans L, Verspecht C, De Sutter L, Lima-Mendez G, D'hoe K, Jonckheere K, Homola D, Garcia R, Tigchelaar EF, Eeckhaudt L, Fu J, Henckaerts L, Zhernakova A, Wijmenga C, Raes J.

Science. 2016 Apr 29;352(6285):560-4. doi: 10.1126/science.aad3503. Epub 2016 Apr 28.

22.

Erratum to: Genetic diversity of Ixodes pavlovskyi and I. persulcatus (Acari: Ixodidae) from the sympatric zone in the south of Western Siberia and Kazakhstan.

Livanova NN, Tikunov AY, Kurilshikov AM, Livanov SG, Fomenko NV, Taranenko DE, Kvashnina AE, Tikunova NV.

Exp Appl Acarol. 2016 Jan;68(1):139-43. doi: 10.1007/s10493-015-9986-0. No abstract available.

PMID:
26597590
23.

Genetic diversity of Ixodes pavlovskyi and I. persulcatus (Acari: Ixodidae) from the sympatric zone in the south of Western Siberia and Kazakhstan.

Livanova NN, Tikunov AY, Kurilshikov AM, Livanov SG, Fomenko NV, Taranenko DE, Kvashnina AE, Tikunova NV.

Exp Appl Acarol. 2015 Nov;67(3):441-56. doi: 10.1007/s10493-015-9947-7. Epub 2015 Jul 23. Erratum in: Exp Appl Acarol. 2016 Jan;68(1):139-43.

PMID:
26201397
24.

Comparative Metagenomic Profiling of Symbiotic Bacterial Communities Associated with Ixodes persulcatus, Ixodes pavlovskyi and Dermacentor reticulatus Ticks.

Kurilshikov A, Livanova NN, Fomenko NV, Tupikin AE, Rar VA, Kabilov MR, Livanov SG, Tikunova NV.

PLoS One. 2015 Jul 8;10(7):e0131413. doi: 10.1371/journal.pone.0131413. eCollection 2015.

25.

Complete Genome Sequencing of Borrelia valaisiana and Borrelia afzelii Isolated from Ixodes persulcatus Ticks in Western Siberia.

Kurilshikov AM, Fomenko NV, Stronin OV, Tikunov AY, Kabilov MR, Tupikin AE, Tikunova NV.

Genome Announc. 2014 Dec 24;2(6). pii: e01315-14. doi: 10.1128/genomeA.01315-14.

26.

MicroRNA drop in the bloodstream and microRNA boost in the tumour caused by treatment with ribonuclease A leads to an attenuation of tumour malignancy.

Mironova N, Patutina O, Brenner E, Kurilshikov A, Vlassov V, Zenkova M.

PLoS One. 2013 Dec 30;8(12):e83482. doi: 10.1371/journal.pone.0083482. eCollection 2013.

27.

Draft Genome Sequence of Bacillus cereus Strain F, Isolated from Ancient Permafrost.

Brenner EV, Brouchkov AV, Kurilshikov AM, Griva GI, Kashuba E, Kashuba VI, Melefors O, Repin VE, Melnikov VP, Vlassov VV.

Genome Announc. 2013 Aug 1;1(4). pii: e00561-13. doi: 10.1128/genomeA.00561-13.

28.

Evolutionary time-scale of primate bocaviruses.

Babkin IV, Tyumentsev AI, Tikunov AY, Kurilshikov AM, Ryabchikova EI, Zhirakovskaya EV, Netesov SV, Tikunova NV.

Infect Genet Evol. 2013 Mar;14:265-74. doi: 10.1016/j.meegid.2012.12.023. Epub 2013 Jan 8.

PMID:
23313830
29.

Whole-genome sequencing of Borrelia garinii BgVir, isolated from Taiga ticks (Ixodes persulcatus).

Brenner EV, Kurilshikov AM, Stronin OV, Fomenko NV.

J Bacteriol. 2012 Oct;194(20):5713.

30.

Unbiased approach to profile the variety of small non-coding RNA of human blood plasma with massively parallel sequencing technology.

Semenov DV, Baryakin DN, Brenner EV, Kurilshikov AM, Vasiliev GV, Bryzgalov LA, Chikova ED, Filippova JA, Kuligina EV, Richter VA.

Expert Opin Biol Ther. 2012 Jun;12 Suppl 1:S43-51. doi: 10.1517/14712598.2012.679653. Epub 2012 Apr 18.

PMID:
22509727
31.

A comparative study of cell-free apoptotic and genomic DNA using FISH and massive parallel sequencing.

Morozkin ES, Loseva EM, Morozov IV, Kurilshikov AM, Bondar AA, Rykova EY, Rubtsov NB, Vlassov VV, Laktionov PP.

Expert Opin Biol Ther. 2012 Jun;12 Suppl 1:S11-7. doi: 10.1517/14712598.2012.670631. Epub 2012 Apr 16.

PMID:
22506740

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