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Items: 1 to 50 of 73

1.

Assessing nickel tolerance of bacteria isolated from serpentine soils.

Costa FS, Macedo MWFS, Araújo ACM, Rodrigues CA, Kuramae EE, de Barros Alcanfor SK, Pessoa-Filho M, Barreto CC.

Braz J Microbiol. 2019 Jul 11. doi: 10.1007/s42770-019-00111-4. [Epub ahead of print]

PMID:
31297747
2.

Peat substrate amended with chitin modulates the N-cycle, siderophore and chitinase responses in the lettuce rhizobiome.

De Tender C, Mesuere B, Van der Jeugt F, Haegeman A, Ruttink T, Vandecasteele B, Dawyndt P, Debode J, Kuramae EE.

Sci Rep. 2019 Jul 9;9(1):9890. doi: 10.1038/s41598-019-46106-x.

3.

Wood Decay Characteristics and Interspecific Interactions Control Bacterial Community Succession in Populus grandidentata (Bigtooth Aspen).

Kuramae EE, Leite MFA, Suleiman AKA, Gough CM, Castillo BT, Faller L, Franklin RB, Syring J.

Front Microbiol. 2019 May 9;10:979. doi: 10.3389/fmicb.2019.00979. eCollection 2019.

4.

Bacterial community composition and diversity of two different forms of an organic residue of bioenergy crop.

Cipriano MAP, Suleiman AKA, da Silveira APD, do Carmo JB, Kuramae EE.

PeerJ. 2019 Apr 18;7:e6768. doi: 10.7717/peerj.6768. eCollection 2019.

5.

Nitrification inhibitors effectively target N2 O-producing Nitrosospira spp. in tropical soil.

Cassman NA, Soares JR, Pijl A, Lourenço KS, van Veen JA, Cantarella H, Kuramae EE.

Environ Microbiol. 2019 Apr;21(4):1241-1254. doi: 10.1111/1462-2920.14557. Epub 2019 Mar 14.

PMID:
30735001
6.

Moisture Is More Important than Temperature for Assembly of Both Potentially Active and Whole Prokaryotic Communities in Subtropical Grassland.

Lupatini M, Suleiman AKA, Jacques RJS, Lemos LN, Pylro VS, Van Veen JA, Kuramae EE, Roesch LFW.

Microb Ecol. 2019 Feb;77(2):460-470. doi: 10.1007/s00248-018-1310-1. Epub 2019 Jan 3.

PMID:
30607437
7.

Legacy of land use history determines reprogramming of plant physiology by soil microbiome.

Li X, Jousset A, de Boer W, Carrión VJ, Zhang T, Wang X, Kuramae EE.

ISME J. 2019 Mar;13(3):738-751. doi: 10.1038/s41396-018-0300-0. Epub 2018 Oct 27.

PMID:
30368524
8.

Strategies to mitigate the nitrous oxide emissions from nitrogen fertilizer applied with organic fertilizers in sugarcane.

Lourenço KS, Rossetto R, Vitti AC, Montezano ZF, Soares JR, Sousa RM, do Carmo JB, Kuramae EE, Cantarella H.

Sci Total Environ. 2019 Feb 10;650(Pt 1):1476-1486. doi: 10.1016/j.scitotenv.2018.09.037. Epub 2018 Sep 4.

PMID:
30308834
9.

Correction to: Genome-resolved metagenomics of sugarcane vinasse bacteria.

Cassman NA, Lourenço KS, do Carmo JB, Cantarella H, Kuramae EE.

Biotechnol Biofuels. 2018 Oct 3;11:270. doi: 10.1186/s13068-018-1254-1. eCollection 2018.

10.

Exploitation of new endophytic bacteria and their ability to promote sugarcane growth and nitrogen nutrition.

da Silveira APD, Iório RPF, Marcos FCC, Fernandes AO, de Souza SACD, Kuramae EE, Cipriano MAP.

Antonie Van Leeuwenhoek. 2019 Feb;112(2):283-295. doi: 10.1007/s10482-018-1157-y. Epub 2018 Sep 7.

PMID:
30194506
11.

Resilience of the resident soil microbiome to organic and inorganic amendment disturbances and to temporary bacterial invasion.

Lourenço KS, Suleiman AKA, Pijl A, van Veen JA, Cantarella H, Kuramae EE.

Microbiome. 2018 Aug 13;6(1):142. doi: 10.1186/s40168-018-0525-1.

12.

Microbial Extracellular Polymeric Substances: Ecological Function and Impact on Soil Aggregation.

Costa OYA, Raaijmakers JM, Kuramae EE.

Front Microbiol. 2018 Jul 23;9:1636. doi: 10.3389/fmicb.2018.01636. eCollection 2018. Review.

13.

Effect of Burkholderia tropica and Herbaspirillum frisingense strains on sorghum growth is plant genotype dependent.

Schlemper TR, Dimitrov MR, Silva Gutierrez FAO, van Veen JA, Silveira APD, Kuramae EE.

PeerJ. 2018 Jul 24;6:e5346. doi: 10.7717/peerj.5346. eCollection 2018.

14.

Long-term farming systems modulate multi-trophic responses.

Lupatini M, Korthals GW, Roesch LFW, Kuramae EE.

Sci Total Environ. 2019 Jan 1;646:480-490. doi: 10.1016/j.scitotenv.2018.07.323. Epub 2018 Jul 24.

15.

Native bacteria promote plant growth under drought stress condition without impacting the rhizomicrobiome.

Armada E, Leite MFA, Medina A, Azcón R, Kuramae EE.

FEMS Microbiol Ecol. 2018 Jul 1;94(7). doi: 10.1093/femsec/fiy092.

PMID:
29771325
16.

Recycling organic residues in agriculture impacts soil-borne microbial community structure, function and N2O emissions.

Suleiman AKA, Lourenço KS, Pitombo LM, Mendes LW, Roesch LFW, Pijl A, Carmo JB, Cantarella H, Kuramae EE.

Sci Total Environ. 2018 Aug 1;631-632:1089-1099. doi: 10.1016/j.scitotenv.2018.03.116. Epub 2018 Mar 16.

PMID:
29727935
17.

Nitrosospira sp. Govern Nitrous Oxide Emissions in a Tropical Soil Amended With Residues of Bioenergy Crop.

Lourenço KS, Cassman NA, Pijl AS, van Veen JA, Cantarella H, Kuramae EE.

Front Microbiol. 2018 Apr 10;9:674. doi: 10.3389/fmicb.2018.00674. eCollection 2018.

18.

Comparative Genomics of Smut Pathogens: Insights From Orphans and Positively Selected Genes Into Host Specialization.

Benevenuto J, Teixeira-Silva NS, Kuramae EE, Croll D, Monteiro-Vitorello CB.

Front Microbiol. 2018 Apr 6;9:660. doi: 10.3389/fmicb.2018.00660. eCollection 2018.

19.

Genome-resolved metagenomics of sugarcane vinasse bacteria.

Cassman NA, Lourenço KS, do Carmo JB, Cantarella H, Kuramae EE.

Biotechnol Biofuels. 2018 Feb 22;11:48. doi: 10.1186/s13068-018-1036-9. eCollection 2018. Erratum in: Biotechnol Biofuels. 2018 Oct 3;11:270.

20.

Co-Variation of Bacterial and Fungal Communities in Different Sorghum Cultivars and Growth Stages is Soil Dependent.

Schlemper TR, van Veen JA, Kuramae EE.

Microb Ecol. 2018 Jul;76(1):205-214. doi: 10.1007/s00248-017-1108-6. Epub 2017 Nov 16.

21.

Methanogens predominate in natural corrosion protective layers on metal sheet piles.

Kip N, Jansen S, Leite MFA, de Hollander M, Afanasyev M, Kuramae EE, Veen JAV.

Sci Rep. 2017 Sep 19;7(1):11899. doi: 10.1038/s41598-017-11244-7.

22.

Rhizobacterial community structure differences among sorghum cultivars in different growth stages and soils.

Schlemper TR, Leite MFA, Lucheta AR, Shimels M, Bouwmeester HJ, van Veen JA, Kuramae EE.

FEMS Microbiol Ecol. 2017 Aug 1;93(8). doi: 10.1093/femsec/fix096.

PMID:
28830071
23.

Organic nitrogen rearranges both structure and activity of the soil-borne microbial seedbank.

Leite MF, Pan Y, Bloem J, Berge HT, Kuramae EE.

Sci Rep. 2017 Feb 15;7:42634. doi: 10.1038/srep42634.

24.

Successive DNA extractions improve characterization of soil microbial communities.

Dimitrov MR, Veraart AJ, de Hollander M, Smidt H, van Veen JA, Kuramae EE.

PeerJ. 2017 Feb 1;5:e2915. doi: 10.7717/peerj.2915. eCollection 2017.

25.

Characterization of novel Acidobacteria exopolysaccharides with potential industrial and ecological applications.

Kielak AM, Castellane TC, Campanharo JC, Colnago LA, Costa OY, Corradi da Silva ML, van Veen JA, Lemos EG, Kuramae EE.

Sci Rep. 2017 Jan 24;7:41193. doi: 10.1038/srep41193.

26.

Soil Microbiome Is More Heterogeneous in Organic Than in Conventional Farming System.

Lupatini M, Korthals GW, de Hollander M, Janssens TK, Kuramae EE.

Front Microbiol. 2017 Jan 4;7:2064. doi: 10.3389/fmicb.2016.02064. eCollection 2016.

27.

Optimized medium culture for Acidobacteria subdivision 1 strains.

Campanharo JC, Kielak AM, Castellane TCL, Kuramae EE, Lemos EGM.

FEMS Microbiol Lett. 2016 Nov 1;363(21). pii: fnw245. doi: 10.1093/femsle/fnw245.

PMID:
27810887
28.

Lettuce and rhizosphere microbiome responses to growth promoting Pseudomonas species under field conditions.

Cipriano MA, Lupatini M, Lopes-Santos L, da Silva MJ, Roesch LF, Destéfano SA, Freitas SS, Kuramae EE.

FEMS Microbiol Ecol. 2016 Dec;92(12). pii: fiw197. Epub 2016 Sep 21.

PMID:
27660605
29.

Acidobacteria strains from subdivision 1 act as plant growth-promoting bacteria.

Kielak AM, Cipriano MA, Kuramae EE.

Arch Microbiol. 2016 Dec;198(10):987-993. Epub 2016 Jun 23.

30.

Functional traits dominate the diversity-related selection of bacterial communities in the rhizosphere.

Yan Y, Kuramae EE, de Hollander M, Klinkhamer PG, van Veen JA.

ISME J. 2017 Jan;11(1):56-66. doi: 10.1038/ismej.2016.108. Epub 2016 Aug 2.

31.

Nitrous oxide emission related to ammonia-oxidizing bacteria and mitigation options from N fertilization in a tropical soil.

Soares JR, Cassman NA, Kielak AM, Pijl A, Carmo JB, Lourenço KS, Laanbroek HJ, Cantarella H, Kuramae EE.

Sci Rep. 2016 Jul 27;6:30349. doi: 10.1038/srep30349.

32.

The Ecology of Acidobacteria: Moving beyond Genes and Genomes.

Kielak AM, Barreto CC, Kowalchuk GA, van Veen JA, Kuramae EE.

Front Microbiol. 2016 May 31;7:744. doi: 10.3389/fmicb.2016.00744. eCollection 2016. Review.

33.

Plant and soil fungal but not soil bacterial communities are linked in long-term fertilized grassland.

Cassman NA, Leite MF, Pan Y, de Hollander M, van Veen JA, Kuramae EE.

Sci Rep. 2016 Mar 29;6:23680. doi: 10.1038/srep23680.

34.

Phylogenetic relationships of Rhizoctonia fungi within the Cantharellales.

Gónzalez D, Rodriguez-Carres M, Boekhout T, Stalpers J, Kuramae EE, Nakatani AK, Vilgalys R, Cubeta MA.

Fungal Biol. 2016 Apr;120(4):603-619. doi: 10.1016/j.funbio.2016.01.012. Epub 2016 Jan 29.

35.

Bacterial Community Succession in Pine-Wood Decomposition.

Kielak AM, Scheublin TR, Mendes LW, van Veen JA, Kuramae EE.

Front Microbiol. 2016 Mar 1;7:231. doi: 10.3389/fmicb.2016.00231. eCollection 2016.

36.

Fungal Community Assembly in the Amazonian Dark Earth.

Lucheta AR, Cannavan Fde S, Roesch LF, Tsai SM, Kuramae EE.

Microb Ecol. 2016 May;71(4):962-73. doi: 10.1007/s00248-015-0703-7. Epub 2015 Nov 19.

37.

Non-random species loss in bacterial communities reduces antifungal volatile production.

Hol WH, Garbeva P, Hordijk C, Hundscheid PJ, Gunnewiek PJ, Van Agtmaal M, Kuramae EE, De Boer W.

Ecology. 2015 Aug;96(8):2042-8.

PMID:
26405729
38.

Verrucomicrobial community structure and abundance as indicators for changes in chemical factors linked to soil fertility.

Navarrete AA, Soares T, Rossetto R, van Veen JA, Tsai SM, Kuramae EE.

Antonie Van Leeuwenhoek. 2015 Sep;108(3):741-52. doi: 10.1007/s10482-015-0530-3. Epub 2015 Jul 17.

39.

Context dependency and saturating effects of loss of rare soil microbes on plant productivity.

Hol WH, de Boer W, de Hollander M, Kuramae EE, Meisner A, van der Putten WH.

Front Plant Sci. 2015 Jun 30;6:485. doi: 10.3389/fpls.2015.00485. eCollection 2015.

40.

Revisiting the dilution procedure used to manipulate microbial biodiversity in terrestrial systems.

Yan Y, Kuramae EE, Klinkhamer PG, van Veen JA.

Appl Environ Microbiol. 2015 Jul;81(13):4246-52. doi: 10.1128/AEM.00958-15. Epub 2015 Apr 17.

41.

Soil microbiome responses to the short-term effects of Amazonian deforestation.

Navarrete AA, Tsai SM, Mendes LW, Faust K, de Hollander M, Cassman NA, Raes J, van Veen JA, Kuramae EE.

Mol Ecol. 2015 May;24(10):2433-48. doi: 10.1111/mec.13172. Epub 2015 Apr 21.

PMID:
25809788
42.

Soil-borne microbiome: linking diversity to function.

Mendes LW, Tsai SM, Navarrete AA, de Hollander M, van Veen JA, Kuramae EE.

Microb Ecol. 2015 Jul;70(1):255-65. doi: 10.1007/s00248-014-0559-2. Epub 2015 Jan 14.

PMID:
25586384
43.

Soil-borne microbial functional structure across different land uses.

Kuramae EE, Zhou JZ, Kowalchuk GA, van Veen JA.

ScientificWorldJournal. 2014;2014:216071. doi: 10.1155/2014/216071. Epub 2014 Aug 10.

44.

Amazonian dark Earth and plant species from the Amazon region contribute to shape rhizosphere bacterial communities.

Barbosa Lima A, Cannavan FS, Navarrete AA, Teixeira WG, Kuramae EE, Tsai SM.

Microb Ecol. 2015 May;69(4):855-66. doi: 10.1007/s00248-014-0472-8. Epub 2014 Aug 8.

PMID:
25103911
45.

Impact of long-term N, P, K, and NPK fertilization on the composition and potential functions of the bacterial community in grassland soil.

Pan Y, Cassman N, de Hollander M, Mendes LW, Korevaar H, Geerts RH, van Veen JA, Kuramae EE.

FEMS Microbiol Ecol. 2014 Oct;90(1):195-205. doi: 10.1111/1574-6941.12384. Epub 2014 Aug 21.

46.

Taxonomical and functional microbial community selection in soybean rhizosphere.

Mendes LW, Kuramae EE, Navarrete AA, van Veen JA, Tsai SM.

ISME J. 2014 Aug;8(8):1577-87. doi: 10.1038/ismej.2014.17. Epub 2014 Feb 20.

47.

Soil-borne bacterial structure and diversity does not reflect community activity in Pampa biome.

Lupatini M, Suleiman AK, Jacques RJ, Antoniolli ZI, Kuramae EE, de Oliveira Camargo FA, Roesch LF.

PLoS One. 2013 Oct 16;8(10):e76465. doi: 10.1371/journal.pone.0076465. eCollection 2013.

48.

Sulphur-oxidizing and sulphate-reducing communities in Brazilian mangrove sediments.

Varon-Lopez M, Dias AC, Fasanella CC, Durrer A, Melo IS, Kuramae EE, Andreote FD.

Environ Microbiol. 2014 Mar;16(3):845-55. doi: 10.1111/1462-2920.12237. Epub 2013 Aug 27.

PMID:
24033859
49.

Tracking fungal community responses to maize plants by DNA- and RNA-based pyrosequencing.

Kuramae EE, Verbruggen E, Hillekens R, de Hollander M, Röling WF, van der Heijden MG, Kowalchuk GA.

PLoS One. 2013 Jul 18;8(7):e69973. doi: 10.1371/journal.pone.0069973. Print 2013.

50.

Structural and functional variation in soil fungal communities associated with litter bags containing maize leaf.

Kuramae EE, Hillekens RH, de Hollander M, van der Heijden MG, van den Berg M, van Straalen NM, Kowalchuk GA.

FEMS Microbiol Ecol. 2013 Jun;84(3):519-31. doi: 10.1111/1574-6941.12080. Epub 2013 Feb 19.

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