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Biorthogonal Bulk-Boundary Correspondence in Non-Hermitian Systems.

Kunst FK, Edvardsson E, Budich JC, Bergholtz EJ.

Phys Rev Lett. 2018 Jul 13;121(2):026808. doi: 10.1103/PhysRevLett.121.026808.


Genetically modified neural stem cells for a local and sustained delivery of neuroprotective factors to the dystrophic mouse retina.

Jung G, Sun J, Petrowitz B, Riecken K, Kruszewski K, Jankowiak W, Kunst F, Skevas C, Richard G, Fehse B, Bartsch U.

Stem Cells Transl Med. 2013 Dec;2(12):1001-10. doi: 10.5966/sctm.2013-0013. Epub 2013 Oct 28.


Endothelial progenitor cells and plasma vascular endothelial growth factor and stromal cell-derived factor-1 during ranibizumab treatment for neovascular age-related macular degeneration.

Grierson R, Meyer-Rüsenberg B, Kunst F, Berna MJ, Richard G, Thill M.

J Ocul Pharmacol Ther. 2013 Jul-Aug;29(6):530-8. doi: 10.1089/jop.2012.0013. Epub 2013 Apr 10.


SU5416 induces premature senescence in endothelial progenitor cells from patients with age-related macular degeneration.

Thill M, Berna MJ, Kunst F, Wege H, Strunnikova NV, Gordiyenko N, Grierson R, Richard G, Csaky KG.

Mol Vis. 2011 Jan 10;17:85-98.


From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later.

Barbe V, Cruveiller S, Kunst F, Lenoble P, Meurice G, Sekowska A, Vallenet D, Wang T, Moszer I, Médigue C, Danchin A.

Microbiology. 2009 Jun;155(Pt 6):1758-1775. doi: 10.1099/mic.0.027839-0. Epub 2009 Apr 21.


Shaping a bacterial genome by large chromosomal replacements, the evolutionary history of Streptococcus agalactiae.

Brochet M, Rusniok C, Couvé E, Dramsi S, Poyart C, Trieu-Cuot P, Kunst F, Glaser P.

Proc Natl Acad Sci U S A. 2008 Oct 14;105(41):15961-6. doi: 10.1073/pnas.0803654105. Epub 2008 Oct 2.


Multigenome analysis identifies a worldwide distributed epidemic Legionella pneumophila clone that emerged within a highly diverse species.

Cazalet C, Jarraud S, Ghavi-Helm Y, Kunst F, Glaser P, Etienne J, Buchrieser C.

Genome Res. 2008 Mar;18(3):431-41. doi: 10.1101/gr.7229808. Epub 2008 Feb 6.


Comparative transcriptome analysis of Listeria monocytogenes strains of the two major lineages reveals differences in virulence, cell wall, and stress response.

Severino P, Dussurget O, Vêncio RZ, Dumas E, Garrido P, Padilla G, Piveteau P, Lemaître JP, Kunst F, Glaser P, Buchrieser C.

Appl Environ Microbiol. 2007 Oct;73(19):6078-88. Epub 2007 Aug 17.


Virulence strategies for infecting phagocytes deduced from the in vivo transcriptional program of Legionella pneumophila.

Brüggemann H, Hagman A, Jules M, Sismeiro O, Dillies MA, Gouyette C, Kunst F, Steinert M, Heuner K, Coppée JY, Buchrieser C.

Cell Microbiol. 2006 Aug;8(8):1228-40.


Rapid detection of the "highly virulent" group B Streptococcus ST-17 clone.

Lamy MC, Dramsi S, Billoët A, Réglier-Poupet H, Tazi A, Raymond J, Guérin F, Couvé E, Kunst F, Glaser P, Trieu-Cuot P, Poyart C.

Microbes Infect. 2006 Jun;8(7):1714-22. Epub 2006 Apr 21.


Genome microevolution of chikungunya viruses causing the Indian Ocean outbreak.

Schuffenecker I, Iteman I, Michault A, Murri S, Frangeul L, Vaney MC, Lavenir R, Pardigon N, Reynes JM, Pettinelli F, Biscornet L, Diancourt L, Michel S, Duquerroy S, Guigon G, Frenkiel MP, Bréhin AC, Cubito N, Desprès P, Kunst F, Rey FA, Zeller H, Brisse S.

PLoS Med. 2006 Jul;3(7):e263. Epub 2006 May 23.


Genomic diversity and evolution within the species Streptococcus agalactiae.

Brochet M, Couvé E, Zouine M, Vallaeys T, Rusniok C, Lamy MC, Buchrieser C, Trieu-Cuot P, Kunst F, Poyart C, Glaser P.

Microbes Infect. 2006 Apr;8(5):1227-43. Epub 2006 Jan 19.


Whole-genome comparison between Photorhabdus strains to identify genomic regions involved in the specificity of nematode interaction.

Gaudriault S, Duchaud E, Lanois A, Canoy AS, Bourot S, Derose R, Kunst F, Boemare N, Givaudan A.

J Bacteriol. 2006 Jan;188(2):809-14.


The SrtA Sortase of Streptococcus agalactiae is required for cell wall anchoring of proteins containing the LPXTG motif, for adhesion to epithelial cells, and for colonization of the mouse intestine.

Lalioui L, Pellegrini E, Dramsi S, Baptista M, Bourgeois N, Doucet-Populaire F, Rusniok C, Zouine M, Glaser P, Kunst F, Poyart C, Trieu-Cuot P.

Infect Immun. 2005 Jun;73(6):3342-50.


Site-specific antiphagocytic function of the Photorhabdus luminescens type III secretion system during insect colonization.

Brugirard-Ricaud K, Duchaud E, Givaudan A, Girard PA, Kunst F, Boemare N, Brehélin M, Zumbihl R.

Cell Microbiol. 2005 Mar;7(3):363-71.


CovS/CovR of group B streptococcus: a two-component global regulatory system involved in virulence.

Lamy MC, Zouine M, Fert J, Vergassola M, Couve E, Pellegrini E, Glaser P, Kunst F, Msadek T, Trieu-Cuot P, Poyart C.

Mol Microbiol. 2004 Dec;54(5):1250-68.


Evidence in the Legionella pneumophila genome for exploitation of host cell functions and high genome plasticity.

Cazalet C, Rusniok C, Brüggemann H, Zidane N, Magnier A, Ma L, Tichit M, Jarraud S, Bouchier C, Vandenesch F, Kunst F, Etienne J, Glaser P, Buchrieser C.

Nat Genet. 2004 Nov;36(11):1165-73. Epub 2004 Oct 3.


Variation in the effectors of the type III secretion system among Photorhabdus species as revealed by genomic analysis.

Brugirard-Ricaud K, Givaudan A, Parkhill J, Boemare N, Kunst F, Zumbihl R, Duchaud E.

J Bacteriol. 2004 Jul;186(13):4376-81.


AstR-AstS, a new two-component signal transduction system, mediates swarming, adaptation to stationary phase and phenotypic variation in Photorhabdus luminescens.

Derzelle S, Ngo S, Turlin É, Duchaud É, Namane A, Kunst F, Danchin A, Bertin P, Charles JF.

Microbiology. 2004 Apr;150(Pt 4):897-910. doi: 10.1099/mic.0.26563-0.


Identification of a P2-related prophage remnant locus of Photorhabdus luminescens encoding an R-type phage tail-like particle.

Gaudriault S, Thaler JO, Duchaud E, Kunst F, Boemare N, Givaudan A.

FEMS Microbiol Lett. 2004 Apr 15;233(2):223-31.


The PhoP-PhoQ two-component regulatory system of Photorhabdus luminescens is essential for virulence in insects.

Derzelle S, Turlin E, Duchaud E, Pages S, Kunst F, Givaudan A, Danchin A.

J Bacteriol. 2004 Mar;186(5):1270-9.


CAAT-Box, Contigs-Assembly and Annotation Tool-Box for genome sequencing projects.

Frangeul L, Glaser P, Rusniok C, Buchrieser C, Duchaud E, Dehoux P, Kunst F.

Bioinformatics. 2004 Mar 22;20(5):790-7. Epub 2004 Jan 29.


New aspects regarding evolution and virulence of Listeria monocytogenes revealed by comparative genomics and DNA arrays.

Doumith M, Cazalet C, Simoes N, Frangeul L, Jacquet C, Kunst F, Martin P, Cossart P, Glaser P, Buchrieser C.

Infect Immun. 2004 Feb;72(2):1072-83.


The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens.

Duchaud E, Rusniok C, Frangeul L, Buchrieser C, Givaudan A, Taourit S, Bocs S, Boursaux-Eude C, Chandler M, Charles JF, Dassa E, Derose R, Derzelle S, Freyssinet G, Gaudriault S, Médigue C, Lanois A, Powell K, Siguier P, Vincent R, Wingate V, Zouine M, Glaser P, Boemare N, Danchin A, Kunst F.

Nat Biotechnol. 2003 Nov;21(11):1307-13. Epub 2003 Oct 5.


Multilocus sequence typing system for group B streptococcus.

Jones N, Bohnsack JF, Takahashi S, Oliver KA, Chan MS, Kunst F, Glaser P, Rusniok C, Crook DW, Harding RM, Bisharat N, Spratt BG.

J Clin Microbiol. 2003 Jun;41(6):2530-6.


Comparison of the genome sequences of Listeria monocytogenes and Listeria innocua: clues for evolution and pathogenicity.

Buchrieser C, Rusniok C, Kunst F, Cossart P, Glaser P; Listeria Consortium.

FEMS Immunol Med Microbiol. 2003 Apr 1;35(3):207-13. Review.


Exploring the Penicillium marneffei genome.

Yuen KY, Pascal G, Wong SS, Glaser P, Woo PC, Kunst F, Cai JJ, Cheung EY, Médigue C, Danchin A.

Arch Microbiol. 2003 May;179(5):339-53. Epub 2003 Mar 15.


Transcriptome analysis of Listeria monocytogenes identifies three groups of genes differently regulated by PrfA.

Milohanic E, Glaser P, Coppée JY, Frangeul L, Vega Y, Vázquez-Boland JA, Kunst F, Cossart P, Buchrieser C.

Mol Microbiol. 2003 Mar;47(6):1613-25.


Genome sequence of Streptococcus agalactiae, a pathogen causing invasive neonatal disease.

Glaser P, Rusniok C, Buchrieser C, Chevalier F, Frangeul L, Msadek T, Zouine M, Couvé E, Lalioui L, Poyart C, Trieu-Cuot P, Kunst F.

Mol Microbiol. 2002 Sep;45(6):1499-513.


DiffTool: building, visualizing and querying protein clusters.

Chetouani F, Glaser P, Kunst F.

Bioinformatics. 2002 Aug;18(8):1143-4.


Identification, characterization, and regulation of a cluster of genes involved in carbapenem biosynthesis in Photorhabdus luminescens.

Derzelle S, Duchaud E, Kunst F, Danchin A, Bertin P.

Appl Environ Microbiol. 2002 Aug;68(8):3780-9.


Comparative genomics of Listeria species.

Glaser P, Frangeul L, Buchrieser C, Rusniok C, Amend A, Baquero F, Berche P, Bloecker H, Brandt P, Chakraborty T, Charbit A, Chetouani F, Couvé E, de Daruvar A, Dehoux P, Domann E, Domínguez-Bernal G, Duchaud E, Durant L, Dussurget O, Entian KD, Fsihi H, García-del Portillo F, Garrido P, Gautier L, Goebel W, Gómez-López N, Hain T, Hauf J, Jackson D, Jones LM, Kaerst U, Kreft J, Kuhn M, Kunst F, Kurapkat G, Madueno E, Maitournam A, Vicente JM, Ng E, Nedjari H, Nordsiek G, Novella S, de Pablos B, Pérez-Diaz JC, Purcell R, Remmel B, Rose M, Schlueter T, Simoes N, Tierrez A, Vázquez-Boland JA, Voss H, Wehland J, Cossart P.

Science. 2001 Oct 26;294(5543):849-52.


Cloning of a genetically unstable cytochrome P-450 gene cluster involved in degradation of the pollutant ethyl tert-butyl ether by Rhodococcus ruber.

Chauvaux S, Chevalier F, Le Dantec C, Fayolle F, Miras I, Kunst F, Beguin P.

J Bacteriol. 2001 Nov;183(22):6551-7.


FindTarget: software for subtractive genome analysis.

Chetouani F, Glaser P, Kunst F.

Microbiology. 2001 Oct;147(Pt 10):2643-2649. doi: 10.1099/00221287-147-10-2643.


The virulence plasmid pWR100 and the repertoire of proteins secreted by the type III secretion apparatus of Shigella flexneri.

Buchrieser C, Glaser P, Rusniok C, Nedjari H, D'Hauteville H, Kunst F, Sansonetti P, Parsot C.

Mol Microbiol. 2000 Nov;38(4):760-71.


Cloning and assembly strategies in microbial genome projects.

Frangeul L, Nelson KE, Buchrieser C, Danchin A, Glaser P, Kunst F.

Microbiology. 1999 Oct;145 ( Pt 10):2625-34. Review. No abstract available.


The 102-kilobase pgm locus of Yersinia pestis: sequence analysis and comparison of selected regions among different Yersinia pestis and Yersinia pseudotuberculosis strains.

Buchrieser C, Rusniok C, Frangeul L, Couve E, Billault A, Kunst F, Carniel E, Glaser P.

Infect Immun. 1999 Sep;67(9):4851-61.


Characterization of a novel member of the DegS-DegU regulon affected by salt stress in Bacillus subtilis.

Dartois V, Débarbouillé M, Kunst F, Rapoport G.

J Bacteriol. 1998 Apr;180(7):1855-61.


The complete genome sequence of the gram-positive bacterium Bacillus subtilis.

Kunst F, Ogasawara N, Moszer I, Albertini AM, Alloni G, Azevedo V, Bertero MG, Bessières P, Bolotin A, Borchert S, Borriss R, Boursier L, Brans A, Braun M, Brignell SC, Bron S, Brouillet S, Bruschi CV, Caldwell B, Capuano V, Carter NM, Choi SK, Cordani JJ, Connerton IF, Cummings NJ, Daniel RA, Denziot F, Devine KM, Düsterhöft A, Ehrlich SD, Emmerson PT, Entian KD, Errington J, Fabret C, Ferrari E, Foulger D, Fritz C, Fujita M, Fujita Y, Fuma S, Galizzi A, Galleron N, Ghim SY, Glaser P, Goffeau A, Golightly EJ, Grandi G, Guiseppi G, Guy BJ, Haga K, Haiech J, Harwood CR, Hènaut A, Hilbert H, Holsappel S, Hosono S, Hullo MF, Itaya M, Jones L, Joris B, Karamata D, Kasahara Y, Klaerr-Blanchard M, Klein C, Kobayashi Y, Koetter P, Koningstein G, Krogh S, Kumano M, Kurita K, Lapidus A, Lardinois S, Lauber J, Lazarevic V, Lee SM, Levine A, Liu H, Masuda S, Mauël C, Médigue C, Medina N, Mellado RP, Mizuno M, Moestl D, Nakai S, Noback M, Noone D, O'Reilly M, Ogawa K, Ogiwara A, Oudega B, Park SH, Parro V, Pohl TM, Portelle D, Porwollik S, Prescott AM, Presecan E, Pujic P, Purnelle B, Rapoport G, Rey M, Reynolds S, Rieger M, Rivolta C, Rocha E, Roche B, Rose M, Sadaie Y, Sato T, Scanlan E, Schleich S, Schroeter R, Scoffone F, Sekiguchi J, Sekowska A, Seror SJ, Serror P, Shin BS, Soldo B, Sorokin A, Tacconi E, Takagi T, Takahashi H, Takemaru K, Takeuchi M, Tamakoshi A, Tanaka T, Terpstra P, Togoni A, Tosato V, Uchiyama S, Vandebol M, Vannier F, Vassarotti A, Viari A, Wambutt R, Wedler H, Weitzenegger T, Winters P, Wipat A, Yamamoto H, Yamane K, Yasumoto K, Yata K, Yoshida K, Yoshikawa HF, Zumstein E, Yoshikawa H, Danchin A.

Nature. 1997 Nov 20;390(6657):249-56.


The Bacillus subtilis genome from gerBC (311 degrees) to licR (334 degrees).

Presecan E, Moszer I, Boursier L, Cruz Ramos HC, de la Fuente V, Hullo MF, Lelong C, Schleich S, Sekowska A, Song BH, Villani G, Kunst F, Danchin A, Glaser P.

Microbiology. 1997 Oct;143 ( Pt 10):3313-28.


The European Bacillus subtilis genome sequencing project: current status and accessibility of the data from a new World Wide Web site.

Moszer I, Kunst F, Danchin A.

Microbiology. 1996 Nov;142 ( Pt 11):2987-91. No abstract available.


Anaerobic transcription activation in Bacillus subtilis: identification of distinct FNR-dependent and -independent regulatory mechanisms.

Cruz Ramos H, Boursier L, Moszer I, Kunst F, Danchin A, Glaser P.

EMBO J. 1995 Dec 1;14(23):5984-94.


Identification and isolation of a gene required for nitrate assimilation and anaerobic growth of Bacillus subtilis.

Glaser P, Danchin A, Kunst F, Zuber P, Nakano MM.

J Bacteriol. 1995 Feb;177(4):1112-5.


Organization of the European Bacillus subtilis genome sequencing project.

Kunst F, Vassarotti A, Danchin A.

Microbiology. 1995 Feb;141 ( Pt 2):249-55. No abstract available.


Bacillus subtilis F0F1 ATPase: DNA sequence of the atp operon and characterization of atp mutants.

Santana M, Ionescu MS, Vertes A, Longin R, Kunst F, Danchin A, Glaser P.

J Bacteriol. 1994 Nov;176(22):6802-11.


The DegS/DegU and ComP/ComA two-component systems are part of a network controlling degradative enzyme synthesis and competence in Bacillus subtilis.

Kunst F, Msadek T, Bignon J, Rapoport G.

Res Microbiol. 1994 Jun-Aug;145(5-6):393-402. Review. No abstract available.


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