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Items: 1 to 50 of 159

1.

Mitochondrial cytochrome oxidase C subunit III (cox3) gene as a sensitive and specific target for molecular detection of Babesia gibsoni infection in dogs.

Betgiri AA, Jadhav SN, Pawde M, Shukla A, Mote C, Pawar PD, Shanmugam D, Kundu K.

Exp Parasitol. 2019 Oct 1;206:107771. doi: 10.1016/j.exppara.2019.107771. [Epub ahead of print]

PMID:
31585116
2.

Correction: Defining lower limits of biodegradation: atrazine degradation regulated by mass transfer and maintenance demand in Arthrobacter aurescens TC1.

Kundu K, Marozava S, Ehrl B, Merl-Pham J, Griebler C, Elsner M.

ISME J. 2019 Oct 2. doi: 10.1038/s41396-019-0512-y. [Epub ahead of print]

PMID:
31578468
3.

Population-wide copy number variation calling using variant call format files from 6,898 individuals.

Png G, Suveges D, Park YC, Walter K, Kundu K, Ntalla I, Tsafantakis E, Karaleftheri M, Dedoussis G, Zeggini E, Gilly A.

Genet Epidemiol. 2019 Sep 14. doi: 10.1002/gepi.22260. [Epub ahead of print]

PMID:
31520489
4.

Spectroscopic and computational insights into the ion-solvent interactions in hydrated aprotic and protic ionic liquids.

Kundu K, Chandra GK, Umapathy S, Kiefer J.

Phys Chem Chem Phys. 2019 Oct 7;21(37):20791-20804. doi: 10.1039/c9cp03670a. Epub 2019 Sep 12.

PMID:
31513201
5.

Synthesis, characterization and applications of polyacrylamide grafted fenugreek gum (FG-g-PAM) as flocculant: Microwave vs thermal synthesis approach.

Mishra S, Kundu K.

Int J Biol Macromol. 2019 Sep 7;141:792-808. doi: 10.1016/j.ijbiomac.2019.09.033. [Epub ahead of print]

PMID:
31505205
6.

Effectiveness of single-dose rifampicin after BCG vaccination to prevent leprosy in close contacts of patients with newly diagnosed leprosy: A cluster randomized controlled trial.

Richardus R, Alam K, Kundu K, Chandra Roy J, Zafar T, Chowdhury AS, Nieboer D, Faber R, Butlin CR, Geluk A, Richardus JH.

Int J Infect Dis. 2019 Sep 6;88:65-72. doi: 10.1016/j.ijid.2019.08.035. [Epub ahead of print]

7.

Assessment of predicted enzymatic activity of α-N-acetylglucosaminidase variants of unknown significance for CAGI 2016.

Clark WT, Kasak L, Bakolitsa C, Hu Z, Andreoletti G, Babbi G, Bromberg Y, Casadio R, Dunbrack R, Folkman L, Ford CT, Jones D, Katsonis P, Kundu K, Lichtarge O, Martelli PL, Mooney SD, Nodzak C, Pal LR, Radivojac P, Savojardo C, Shi X, Zhou Y, Uppal A, Xu Q, Yin Y, Pejaver V, Wang M, Wei L, Moult J, Yu GK, Brenner SE, LeBowitz JH.

Hum Mutat. 2019 Sep;40(9):1519-1529. doi: 10.1002/humu.23875.

PMID:
31342580
8.

CAGI SickKids challenges: Assessment of phenotype and variant predictions derived from clinical and genomic data of children with undiagnosed diseases.

Kasak L, Hunter JM, Udani R, Bakolitsa C, Hu Z, Adhikari AN, Babbi G, Casadio R, Gough J, Guerrero RF, Jiang Y, Joseph T, Katsonis P, Kotte S, Kundu K, Lichtarge O, Martelli PL, Mooney SD, Moult J, Pal LR, Poitras J, Radivojac P, Rao A, Sivadasan N, Sunderam U, Saipradeep VG, Yin Y, Zaucha J, Brenner SE, Meyn MS.

Hum Mutat. 2019 Sep;40(9):1373-1391. doi: 10.1002/humu.23874. Epub 2019 Sep 3.

PMID:
31322791
9.

Canine babesiosis among working dogs of organised kennels in India: A comprehensive haematological, biochemical, clinicopathological and molecular epidemiological multiregional study.

Mittal M, Kundu K, Chakravarti S, Mohapatra JK, Singh VK, Raja Kumar B, Thakur V, Churamani CP, Kumar A.

Prev Vet Med. 2019 Aug 1;169:104696. doi: 10.1016/j.prevetmed.2019.104696. Epub 2019 May 22.

PMID:
31311632
10.

Assessment of methods for predicting the effects of PTEN and TPMT protein variants.

Pejaver V, Babbi G, Casadio R, Folkman L, Katsonis P, Kundu K, Lichtarge O, Martelli PL, Miller M, Moult J, Pal LR, Savojardo C, Yin Y, Zhou Y, Radivojac P, Bromberg Y.

Hum Mutat. 2019 Sep;40(9):1495-1506. doi: 10.1002/humu.23838. Epub 2019 Jul 3.

PMID:
31184403
11.

Inhibition of the NKp44-PCNA Immune Checkpoint Using a mAb to PCNA.

Kundu K, Ghosh S, Sarkar R, Edri A, Brusilovsky M, Gershoni-Yahalom O, Yossef R, Shemesh A, Soria JC, Lazar V, Joshua BZ, Campbell KS, Elkabets M, Porgador A.

Cancer Immunol Res. 2019 Jul;7(7):1120-1134. doi: 10.1158/2326-6066.CIR-19-0023. Epub 2019 Jun 4.

PMID:
31164357
12.

Assessment of patient clinical descriptions and pathogenic variants from gene panel sequences in the CAGI-5 intellectual disability challenge.

Carraro M, Monzon AM, Chiricosta L, Reggiani F, Aspromonte MC, Bellini M, Pagel K, Jiang Y, Radivojac P, Kundu K, Pal LR, Yin Y, Limongelli I, Andreoletti G, Moult J, Wilson SJ, Katsonis P, Lichtarge O, Chen J, Wang Y, Hu Z, Brenner SE, Ferrari C, Murgia A, Tosatto SCE, Leonardi E.

Hum Mutat. 2019 Sep;40(9):1330-1345. doi: 10.1002/humu.23823. Epub 2019 Jul 3.

PMID:
31144778
13.

Impact of cesium in methylammonium lead bromide perovskites: insights into the microstructures, stability and photophysical properties.

Premkumar S, Kundu K, Umapathy S.

Nanoscale. 2019 May 30;11(21):10292-10305. doi: 10.1039/c9nr02733e.

PMID:
31099377
14.

Defining lower limits of biodegradation: atrazine degradation regulated by mass transfer and maintenance demand in Arthrobacter aurescens TC1.

Kundu K, Marozava S, Ehrl B, Merl-Pham J, Griebler C, Elsner M.

ISME J. 2019 Sep;13(9):2236-2251. doi: 10.1038/s41396-019-0430-z. Epub 2019 May 9. Erratum in: ISME J. 2019 Oct 2;:.

15.

Molecular-Level Insights into the Microstructure of a Hydrated and Nanoconfined Deep Eutectic Solvent.

Panda S, Kundu K, Kiefer J, Umapathy S, Gardas RL.

J Phys Chem B. 2019 Apr 18;123(15):3359-3371. doi: 10.1021/acs.jpcb.9b01603. Epub 2019 Apr 9.

PMID:
30924657
16.

Theoretical Aspects of the Cross Effect Enhancement of Nuclear Polarization under Static Dynamic Nuclear Polarization Conditions.

Kundu K, Feintuch A, Vega S.

J Phys Chem Lett. 2019 Apr 18;10(8):1769-1778. doi: 10.1021/acs.jpclett.8b03615. Epub 2019 Apr 1.

PMID:
30864810
17.

The effects of sample conductivity on the efficacy of dynamic nuclear polarization for sensitivity enhancement in solid state NMR spectroscopy.

Svirinovsky-Arbeli A, Rosenberg D, Krotkov D, Damari R, Kundu K, Feintuch A, Houben L, Fleischer S, Leskes M.

Solid State Nucl Magn Reson. 2019 Jul;99:7-14. doi: 10.1016/j.ssnmr.2019.02.003. Epub 2019 Feb 20.

PMID:
30826711
18.

Tumor Tissue Explant Culture of Patient-Derived Xenograft as Potential Prioritization Tool for Targeted Therapy.

Ghosh S, Prasad M, Kundu K, Cohen L, Yegodayev KM, Zorea J, Joshua BZ, Lasry B, Dimitstein O, Bahat-Dinur A, Mizrachi A, Lazar V, Elkabets M, Porgador A.

Front Oncol. 2019 Jan 22;9:17. doi: 10.3389/fonc.2019.00017. eCollection 2019.

19.

Harnessing formal concepts of biological mechanism to analyze human disease.

Darden L, Kundu K, Pal LR, Moult J.

PLoS Comput Biol. 2018 Dec 26;14(12):e1006540. doi: 10.1371/journal.pcbi.1006540. eCollection 2018 Dec.

20.

Author Correction: Cohort-wide deep whole genome sequencing and the allelic architecture of complex traits.

Gilly A, Suveges D, Kuchenbaecker K, Pollard M, Southam L, Hatzikotoulas K, Farmaki AE, Bjornland T, Waples R, Appel EVR, Casalone E, Melloni G, Kilian B, Rayner NW, Ntalla I, Kundu K, Walter K, Danesh J, Butterworth A, Barroso I, Tsafantakis E, Dedoussis G, Moltke I, Zeggini E.

Nat Commun. 2018 Dec 19;9(1):5460. doi: 10.1038/s41467-018-07730-9.

21.

Experimental quantification of electron spectral-diffusion under static DNP conditions.

Kundu K, Cohen MR, Feintuch A, Goldfarb D, Vega S.

Phys Chem Chem Phys. 2018 Dec 19;21(1):478-489. doi: 10.1039/c8cp05930f.

PMID:
30534700
22.

Rate-Limiting Mass Transfer in Micropollutant Degradation Revealed by Isotope Fractionation in Chemostat.

Ehrl BN, Kundu K, Gharasoo M, Marozava S, Elsner M.

Environ Sci Technol. 2019 Feb 5;53(3):1197-1205. doi: 10.1021/acs.est.8b05175. Epub 2018 Dec 19.

23.

Cohort-wide deep whole genome sequencing and the allelic architecture of complex traits.

Gilly A, Suveges D, Kuchenbaecker K, Pollard M, Southam L, Hatzikotoulas K, Farmaki AE, Bjornland T, Waples R, Appel EVR, Casalone E, Melloni G, Kilian B, Rayner NW, Ntalla I, Kundu K, Walter K, Danesh J, Butterworth A, Barroso I, Tsafantakis E, Dedoussis G, Moltke I, Zeggini E.

Nat Commun. 2018 Nov 7;9(1):4674. doi: 10.1038/s41467-018-07070-8. Erratum in: Nat Commun. 2018 Dec 19;9(1):5460.

24.

Abortions in an organized dairy farm from North India reveal the possibility of breed susceptibility to Bovine Brucellosis.

Mittal M, Sharma V, Nehra K, Chakravarti S, Kundu K, Bansal VK, Churamani CP, Kumar A.

One Health. 2017 Nov 6;5:1-5. doi: 10.1016/j.onehlt.2017.11.001. eCollection 2018 Jun.

25.

NKp44-Derived Peptide Binds Proliferating Cell Nuclear Antigen and Mediates Tumor Cell Death.

Shemesh A, Kundu K, Peleg R, Yossef R, Kaplanov I, Ghosh S, Khrapunsky Y, Gershoni-Yahalom O, Rabinski T, Cerwenka A, Atlas R, Porgador A.

Front Immunol. 2018 May 23;9:1114. doi: 10.3389/fimmu.2018.01114. eCollection 2018.

26.

Freiburg RNA tools: a central online resource for RNA-focused research and teaching.

Raden M, Ali SM, Alkhnbashi OS, Busch A, Costa F, Davis JA, Eggenhofer F, Gelhausen R, Georg J, Heyne S, Hiller M, Kundu K, Kleinkauf R, Lott SC, Mohamed MM, Mattheis A, Miladi M, Richter AS, Will S, Wolff J, Wright PR, Backofen R.

Nucleic Acids Res. 2018 Jul 2;46(W1):W25-W29. doi: 10.1093/nar/gky329.

27.

Electron-Electron Cross-Relaxation and Spectral Diffusion during Dynamic Nuclear Polarization Experiments on Solids.

Kundu K, Feintuch A, Vega S.

J Phys Chem Lett. 2018 Apr 5;9(7):1793-1802. doi: 10.1021/acs.jpclett.8b00090. Epub 2018 Mar 27.

PMID:
29553271
28.

Shared genetic effects on chromatin and gene expression indicate a role for enhancer priming in immune response.

Alasoo K, Rodrigues J, Mukhopadhyay S, Knights AJ, Mann AL, Kundu K; HIPSCI Consortium, Hale C, Dougan G, Gaffney DJ.

Nat Genet. 2018 Mar;50(3):424-431. doi: 10.1038/s41588-018-0046-7. Epub 2018 Jan 29.

29.

Splice variants of human natural cytotoxicity receptors: novel innate immune checkpoints.

Shemesh A, Brusilovsky M, Kundu K, Ottolenghi A, Campbell KS, Porgador A.

Cancer Immunol Immunother. 2018 Dec;67(12):1871-1883. doi: 10.1007/s00262-017-2104-x. Epub 2017 Dec 20. Review.

PMID:
29264698
30.

Canine Monocytic Ehrlichiosis among working dogs of organised kennels in India: A comprehensive analyses of clinico-pathology, serological and molecular epidemiological approach.

Mittal M, Kundu K, Chakravarti S, Mohapatra JK, Nehra K, Sinha VK, Sanjeeth BS, Churamani CP, Kumar A.

Prev Vet Med. 2017 Nov 1;147:26-33. doi: 10.1016/j.prevetmed.2017.08.012. Epub 2017 Aug 25.

PMID:
29254723
31.

Understanding Differential Interaction of Protic and Aprotic Ionic Liquids inside Molecular Confinement.

Panda S, Kundu K, Singh AP, Senapati S, Gardas RL.

J Phys Chem B. 2017 Oct 19;121(41):9676-9687. doi: 10.1021/acs.jpcb.7b07945. Epub 2017 Oct 6.

PMID:
28952726
32.

Enhanced stability and water solubilizing capacity of water-in-oil microemulsions based on protic ionic liquids.

Singh AP, Kundu K, Singh V, Gardas RL, Senapati S.

Phys Chem Chem Phys. 2017 Oct 4;19(38):26132-26144. doi: 10.1039/c7cp04313a.

PMID:
28929143
33.

A Combined Experimental and Theoretical Approach to Understand the Structure and Properties of N-Methylpyrrolidone-Based Protic Ionic Liquids.

Panda S, Kundu K, Umapathy S, Gardas RL.

Chemphyschem. 2017 Dec 6;18(23):3416-3428. doi: 10.1002/cphc.201700886. Epub 2017 Oct 13.

PMID:
28921897
34.

Humoral and cytokine response elicited during immunisation with recombinant Immune Mapped protein-1 (EtIMP-1) and oocysts of Eimeria tenella.

Kundu K, Garg R, Kumar S, Mandal M, Tomley FM, Blake DP, Banerjee PS.

Vet Parasitol. 2017 Sep 15;244:44-53. doi: 10.1016/j.vetpar.2017.07.025. Epub 2017 Jul 24.

PMID:
28917316
35.

Working toward precision medicine: Predicting phenotypes from exomes in the Critical Assessment of Genome Interpretation (CAGI) challenges.

Daneshjou R, Wang Y, Bromberg Y, Bovo S, Martelli PL, Babbi G, Lena PD, Casadio R, Edwards M, Gifford D, Jones DT, Sundaram L, Bhat RR, Li X, Pal LR, Kundu K, Yin Y, Moult J, Jiang Y, Pejaver V, Pagel KA, Li B, Mooney SD, Radivojac P, Shah S, Carraro M, Gasparini A, Leonardi E, Giollo M, Ferrari C, Tosatto SCE, Bachar E, Azaria JR, Ofran Y, Unger R, Niroula A, Vihinen M, Chang B, Wang MH, Franke A, Petersen BS, Pirooznia M, Zandi P, McCombie R, Potash JB, Altman RB, Klein TE, Hoskins RA, Repo S, Brenner SE, Morgan AA.

Hum Mutat. 2017 Sep;38(9):1182-1192. doi: 10.1002/humu.23280. Epub 2017 Jul 7.

36.

Total Syntheses of Malabaricones B and C via a Cross-Metathesis Strategy.

Kundu K, Nayak SK.

J Nat Prod. 2017 Jun 23;80(6):1776-1782. doi: 10.1021/acs.jnatprod.6b01119. Epub 2017 Jun 5.

PMID:
28581739
37.
38.

3D Object Proposals Using Stereo Imagery for Accurate Object Class Detection.

Chen X, Kundu K, Zhu Y, Ma H, Fidler S, Urtasun R.

IEEE Trans Pattern Anal Mach Intell. 2018 May;40(5):1259-1272. doi: 10.1109/TPAMI.2017.2706685. Epub 2017 May 19.

PMID:
28541196
39.

CAGI4 Crohn's exome challenge: Marker SNP versus exome variant models for assigning risk of Crohn disease.

Pal LR, Kundu K, Yin Y, Moult J.

Hum Mutat. 2017 Sep;38(9):1225-1234. doi: 10.1002/humu.23256. Epub 2017 Jun 28.

40.

CAGI4 SickKids clinical genomes challenge: A pipeline for identifying pathogenic variants.

Pal LR, Kundu K, Yin Y, Moult J.

Hum Mutat. 2017 Sep;38(9):1169-1181. doi: 10.1002/humu.23257. Epub 2017 Jun 27.

41.

Determination of disease phenotypes and pathogenic variants from exome sequence data in the CAGI 4 gene panel challenge.

Kundu K, Pal LR, Yin Y, Moult J.

Hum Mutat. 2017 Sep;38(9):1201-1216. doi: 10.1002/humu.23249. Epub 2017 Jun 27.

42.

Lessons from the CAGI-4 Hopkins clinical panel challenge.

Chandonia JM, Adhikari A, Carraro M, Chhibber A, Cutting GR, Fu Y, Gasparini A, Jones DT, Kramer A, Kundu K, Lam HYK, Leonardi E, Moult J, Pal LR, Searls DB, Shah S, Sunyaev S, Tosatto SCE, Yin Y, Buckley BA.

Hum Mutat. 2017 Sep;38(9):1155-1168. doi: 10.1002/humu.23225. Epub 2017 Jun 12.

43.

Expression of NKp46 Splice Variants in Nasal Lavage Following Respiratory Viral Infection: Domain 1-Negative Isoforms Predominate and Manifest Higher Activity.

Shemer-Avni Y, Kundu K, Shemesh A, Brusilovsky M, Yossef R, Meshesha M, Solomon-Alemayehu S, Levin S, Gershoni-Yahalom O, Campbell KS, Porgador A.

Front Immunol. 2017 Feb 15;8:161. doi: 10.3389/fimmu.2017.00161. eCollection 2017.

44.

GRIN3B missense mutation as an inherited risk factor for schizophrenia: whole-exome sequencing in a family with a familiar history of psychotic disorders.

Hornig T, Grüning B, Kundu K, Houwaart T, Backofen R, Biber K, Normann C.

Genet Res (Camb). 2017 Jan 30;99:e1. doi: 10.1017/S0016672316000148.

PMID:
28132660
45.

An Efficient Semi-supervised Learning Approach to Predict SH2 Domain Mediated Interactions.

Kundu K, Backofen R.

Methods Mol Biol. 2017;1555:83-97. doi: 10.1007/978-1-4939-6762-9_6.

PMID:
28092029
46.

Eimeria species occurrence varies between geographic regions and poultry production systems and may influence parasite genetic diversity.

Chengat Prakashbabu B, Thenmozhi V, Limon G, Kundu K, Kumar S, Garg R, Clark EL, Srinivasa Rao AS, Raj DG, Raman M, Banerjee PS, Tomley FM, Guitian J, Blake DP.

Vet Parasitol. 2017 Jan 15;233:62-72. doi: 10.1016/j.vetpar.2016.12.003. Epub 2016 Dec 6.

47.

The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.

Astle WJ, Elding H, Jiang T, Allen D, Ruklisa D, Mann AL, Mead D, Bouman H, Riveros-Mckay F, Kostadima MA, Lambourne JJ, Sivapalaratnam S, Downes K, Kundu K, Bomba L, Berentsen K, Bradley JR, Daugherty LC, Delaneau O, Freson K, Garner SF, Grassi L, Guerrero J, Haimel M, Janssen-Megens EM, Kaan A, Kamat M, Kim B, Mandoli A, Marchini J, Martens JHA, Meacham S, Megy K, O'Connell J, Petersen R, Sharifi N, Sheard SM, Staley JR, Tuna S, van der Ent M, Walter K, Wang SY, Wheeler E, Wilder SP, Iotchkova V, Moore C, Sambrook J, Stunnenberg HG, Di Angelantonio E, Kaptoge S, Kuijpers TW, Carrillo-de-Santa-Pau E, Juan D, Rico D, Valencia A, Chen L, Ge B, Vasquez L, Kwan T, Garrido-Martín D, Watt S, Yang Y, Guigo R, Beck S, Paul DS, Pastinen T, Bujold D, Bourque G, Frontini M, Danesh J, Roberts DJ, Ouwehand WH, Butterworth AS, Soranzo N.

Cell. 2016 Nov 17;167(5):1415-1429.e19. doi: 10.1016/j.cell.2016.10.042.

48.

Genetic Drivers of Epigenetic and Transcriptional Variation in Human Immune Cells.

Chen L, Ge B, Casale FP, Vasquez L, Kwan T, Garrido-Martín D, Watt S, Yan Y, Kundu K, Ecker S, Datta A, Richardson D, Burden F, Mead D, Mann AL, Fernandez JM, Rowlston S, Wilder SP, Farrow S, Shao X, Lambourne JJ, Redensek A, Albers CA, Amstislavskiy V, Ashford S, Berentsen K, Bomba L, Bourque G, Bujold D, Busche S, Caron M, Chen SH, Cheung W, Delaneau O, Dermitzakis ET, Elding H, Colgiu I, Bagger FO, Flicek P, Habibi E, Iotchkova V, Janssen-Megens E, Kim B, Lehrach H, Lowy E, Mandoli A, Matarese F, Maurano MT, Morris JA, Pancaldi V, Pourfarzad F, Rehnstrom K, Rendon A, Risch T, Sharifi N, Simon MM, Sultan M, Valencia A, Walter K, Wang SY, Frontini M, Antonarakis SE, Clarke L, Yaspo ML, Beck S, Guigo R, Rico D, Martens JHA, Ouwehand WH, Kuijpers TW, Paul DS, Stunnenberg HG, Stegle O, Downes K, Pastinen T, Soranzo N.

Cell. 2016 Nov 17;167(5):1398-1414.e24. doi: 10.1016/j.cell.2016.10.026.

49.

False-Positive Cystoscopic Diagnosis of Ureteral Obstruction After Hysterectomy Due to a Non-Functional Kidney.

Kundu K, Martin L, Henderson S, Goldberg J, Metro M, Rodgers S.

J Minim Invasive Gynecol. 2015 Nov-Dec;22(6S):S220-S221. doi: 10.1016/j.jmig.2015.08.782. Epub 2015 Oct 15. No abstract available.

PMID:
27679092
50.

Cryptic Eimeria genotypes are common across the southern but not northern hemisphere.

Clark EL, Macdonald SE, Thenmozhi V, Kundu K, Garg R, Kumar S, Ayoade S, Fornace KM, Jatau ID, Moftah A, Nolan MJ, Sudhakar NR, Adebambo AO, Lawal IA, Álvarez Zapata R, Awuni JA, Chapman HD, Karimuribo E, Mugasa CM, Namangala B, Rushton J, Suo X, Thangaraj K, Srinivasa Rao AS, Tewari AK, Banerjee PS, Dhinakar Raj G, Raman M, Tomley FM, Blake DP.

Int J Parasitol. 2016 Aug;46(9):537-44. doi: 10.1016/j.ijpara.2016.05.006. Epub 2016 Jun 29.

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