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Items: 1 to 50 of 144

1.

Theoretical Aspects of the Cross Effect Enhancement of Nuclear Polarization under Static DNP Conditions.

Kundu K, Feintuch A, Vega S.

J Phys Chem Lett. 2019 Mar 13. doi: 10.1021/acs.jpclett.8b03615. [Epub ahead of print]

PMID:
30864810
2.

The effects of sample conductivity on the efficacy of dynamic nuclear polarization for sensitivity enhancement in solid state NMR spectroscopy.

Svirinovsky-Arbeli A, Rosenberg D, Krotkov D, Damari R, Kundu K, Feintuch A, Houben L, Fleischer S, Leskes M.

Solid State Nucl Magn Reson. 2019 Jul;99:7-14. doi: 10.1016/j.ssnmr.2019.02.003. Epub 2019 Feb 20.

PMID:
30826711
3.

Tumor Tissue Explant Culture of Patient-Derived Xenograft as Potential Prioritization Tool for Targeted Therapy.

Ghosh S, Prasad M, Kundu K, Cohen L, Yegodayev KM, Zorea J, Joshua BZ, Lasry B, Dimitstein O, Bahat-Dinur A, Mizrachi A, Lazar V, Elkabets M, Porgador A.

Front Oncol. 2019 Jan 22;9:17. doi: 10.3389/fonc.2019.00017. eCollection 2019.

4.

Harnessing formal concepts of biological mechanism to analyze human disease.

Darden L, Kundu K, Pal LR, Moult J.

PLoS Comput Biol. 2018 Dec 26;14(12):e1006540. doi: 10.1371/journal.pcbi.1006540. eCollection 2018 Dec.

5.

Author Correction: Cohort-wide deep whole genome sequencing and the allelic architecture of complex traits.

Gilly A, Suveges D, Kuchenbaecker K, Pollard M, Southam L, Hatzikotoulas K, Farmaki AE, Bjornland T, Waples R, Appel EVR, Casalone E, Melloni G, Kilian B, Rayner NW, Ntalla I, Kundu K, Walter K, Danesh J, Butterworth A, Barroso I, Tsafantakis E, Dedoussis G, Moltke I, Zeggini E.

Nat Commun. 2018 Dec 19;9(1):5460. doi: 10.1038/s41467-018-07730-9.

6.

Experimental quantification of electron spectral-diffusion under static DNP conditions.

Kundu K, Cohen MR, Feintuch A, Goldfarb D, Vega S.

Phys Chem Chem Phys. 2018 Dec 19;21(1):478-489. doi: 10.1039/c8cp05930f.

PMID:
30534700
7.

Rate-Limiting Mass Transfer in Micropollutant Degradation Revealed by Isotope Fractionation in Chemostat.

Ehrl BN, Kundu K, Gharasoo M, Marozava S, Elsner M.

Environ Sci Technol. 2019 Feb 5;53(3):1197-1205. doi: 10.1021/acs.est.8b05175. Epub 2018 Dec 19.

8.

Cohort-wide deep whole genome sequencing and the allelic architecture of complex traits.

Gilly A, Suveges D, Kuchenbaecker K, Pollard M, Southam L, Hatzikotoulas K, Farmaki AE, Bjornland T, Waples R, Appel EVR, Casalone E, Melloni G, Kilian B, Rayner NW, Ntalla I, Kundu K, Walter K, Danesh J, Butterworth A, Barroso I, Tsafantakis E, Dedoussis G, Moltke I, Zeggini E.

Nat Commun. 2018 Nov 7;9(1):4674. doi: 10.1038/s41467-018-07070-8. Erratum in: Nat Commun. 2018 Dec 19;9(1):5460.

9.

Abortions in an organized dairy farm from North India reveal the possibility of breed susceptibility to Bovine Brucellosis.

Mittal M, Sharma V, Nehra K, Chakravarti S, Kundu K, Bansal VK, Churamani CP, Kumar A.

One Health. 2017 Nov 6;5:1-5. doi: 10.1016/j.onehlt.2017.11.001. eCollection 2018 Jun.

10.

NKp44-Derived Peptide Binds Proliferating Cell Nuclear Antigen and Mediates Tumor Cell Death.

Shemesh A, Kundu K, Peleg R, Yossef R, Kaplanov I, Ghosh S, Khrapunsky Y, Gershoni-Yahalom O, Rabinski T, Cerwenka A, Atlas R, Porgador A.

Front Immunol. 2018 May 23;9:1114. doi: 10.3389/fimmu.2018.01114. eCollection 2018.

11.

Freiburg RNA tools: a central online resource for RNA-focused research and teaching.

Raden M, Ali SM, Alkhnbashi OS, Busch A, Costa F, Davis JA, Eggenhofer F, Gelhausen R, Georg J, Heyne S, Hiller M, Kundu K, Kleinkauf R, Lott SC, Mohamed MM, Mattheis A, Miladi M, Richter AS, Will S, Wolff J, Wright PR, Backofen R.

Nucleic Acids Res. 2018 Jul 2;46(W1):W25-W29. doi: 10.1093/nar/gky329.

12.

Electron-Electron Cross-Relaxation and Spectral Diffusion during Dynamic Nuclear Polarization Experiments on Solids.

Kundu K, Feintuch A, Vega S.

J Phys Chem Lett. 2018 Apr 5;9(7):1793-1802. doi: 10.1021/acs.jpclett.8b00090. Epub 2018 Mar 27.

PMID:
29553271
13.

Shared genetic effects on chromatin and gene expression indicate a role for enhancer priming in immune response.

Alasoo K, Rodrigues J, Mukhopadhyay S, Knights AJ, Mann AL, Kundu K; HIPSCI Consortium, Hale C, Dougan G, Gaffney DJ.

Nat Genet. 2018 Mar;50(3):424-431. doi: 10.1038/s41588-018-0046-7. Epub 2018 Jan 29.

PMID:
29379200
14.

Splice variants of human natural cytotoxicity receptors: novel innate immune checkpoints.

Shemesh A, Brusilovsky M, Kundu K, Ottolenghi A, Campbell KS, Porgador A.

Cancer Immunol Immunother. 2018 Dec;67(12):1871-1883. doi: 10.1007/s00262-017-2104-x. Epub 2017 Dec 20. Review.

PMID:
29264698
15.

Canine Monocytic Ehrlichiosis among working dogs of organised kennels in India: A comprehensive analyses of clinico-pathology, serological and molecular epidemiological approach.

Mittal M, Kundu K, Chakravarti S, Mohapatra JK, Nehra K, Sinha VK, Sanjeeth BS, Churamani CP, Kumar A.

Prev Vet Med. 2017 Nov 1;147:26-33. doi: 10.1016/j.prevetmed.2017.08.012. Epub 2017 Aug 25.

PMID:
29254723
16.

Understanding Differential Interaction of Protic and Aprotic Ionic Liquids inside Molecular Confinement.

Panda S, Kundu K, Singh AP, Senapati S, Gardas RL.

J Phys Chem B. 2017 Oct 19;121(41):9676-9687. doi: 10.1021/acs.jpcb.7b07945. Epub 2017 Oct 6.

PMID:
28952726
17.

Enhanced stability and water solubilizing capacity of water-in-oil microemulsions based on protic ionic liquids.

Singh AP, Kundu K, Singh V, Gardas RL, Senapati S.

Phys Chem Chem Phys. 2017 Oct 4;19(38):26132-26144. doi: 10.1039/c7cp04313a.

PMID:
28929143
18.

A Combined Experimental and Theoretical Approach to Understand the Structure and Properties of N-Methylpyrrolidone-Based Protic Ionic Liquids.

Panda S, Kundu K, Umapathy S, Gardas RL.

Chemphyschem. 2017 Dec 6;18(23):3416-3428. doi: 10.1002/cphc.201700886. Epub 2017 Oct 13.

PMID:
28921897
19.

Humoral and cytokine response elicited during immunisation with recombinant Immune Mapped protein-1 (EtIMP-1) and oocysts of Eimeria tenella.

Kundu K, Garg R, Kumar S, Mandal M, Tomley FM, Blake DP, Banerjee PS.

Vet Parasitol. 2017 Sep 15;244:44-53. doi: 10.1016/j.vetpar.2017.07.025. Epub 2017 Jul 24.

PMID:
28917316
20.

Working toward precision medicine: Predicting phenotypes from exomes in the Critical Assessment of Genome Interpretation (CAGI) challenges.

Daneshjou R, Wang Y, Bromberg Y, Bovo S, Martelli PL, Babbi G, Lena PD, Casadio R, Edwards M, Gifford D, Jones DT, Sundaram L, Bhat RR, Li X, Pal LR, Kundu K, Yin Y, Moult J, Jiang Y, Pejaver V, Pagel KA, Li B, Mooney SD, Radivojac P, Shah S, Carraro M, Gasparini A, Leonardi E, Giollo M, Ferrari C, Tosatto SCE, Bachar E, Azaria JR, Ofran Y, Unger R, Niroula A, Vihinen M, Chang B, Wang MH, Franke A, Petersen BS, Pirooznia M, Zandi P, McCombie R, Potash JB, Altman RB, Klein TE, Hoskins RA, Repo S, Brenner SE, Morgan AA.

Hum Mutat. 2017 Sep;38(9):1182-1192. doi: 10.1002/humu.23280. Epub 2017 Jul 7.

21.

Total Syntheses of Malabaricones B and C via a Cross-Metathesis Strategy.

Kundu K, Nayak SK.

J Nat Prod. 2017 Jun 23;80(6):1776-1782. doi: 10.1021/acs.jnatprod.6b01119. Epub 2017 Jun 5.

PMID:
28581739
22.
23.

3D Object Proposals Using Stereo Imagery for Accurate Object Class Detection.

Chen X, Kundu K, Zhu Y, Ma H, Fidler S, Urtasun R.

IEEE Trans Pattern Anal Mach Intell. 2018 May;40(5):1259-1272. doi: 10.1109/TPAMI.2017.2706685. Epub 2017 May 19.

PMID:
28541196
24.

CAGI4 Crohn's exome challenge: Marker SNP versus exome variant models for assigning risk of Crohn disease.

Pal LR, Kundu K, Yin Y, Moult J.

Hum Mutat. 2017 Sep;38(9):1225-1234. doi: 10.1002/humu.23256. Epub 2017 Jun 28.

25.

CAGI4 SickKids clinical genomes challenge: A pipeline for identifying pathogenic variants.

Pal LR, Kundu K, Yin Y, Moult J.

Hum Mutat. 2017 Sep;38(9):1169-1181. doi: 10.1002/humu.23257. Epub 2017 Jun 27.

26.

Determination of disease phenotypes and pathogenic variants from exome sequence data in the CAGI 4 gene panel challenge.

Kundu K, Pal LR, Yin Y, Moult J.

Hum Mutat. 2017 Sep;38(9):1201-1216. doi: 10.1002/humu.23249. Epub 2017 Jun 27.

27.

Lessons from the CAGI-4 Hopkins clinical panel challenge.

Chandonia JM, Adhikari A, Carraro M, Chhibber A, Cutting GR, Fu Y, Gasparini A, Jones DT, Kramer A, Kundu K, Lam HYK, Leonardi E, Moult J, Pal LR, Searls DB, Shah S, Sunyaev S, Tosatto SCE, Yin Y, Buckley BA.

Hum Mutat. 2017 Sep;38(9):1155-1168. doi: 10.1002/humu.23225. Epub 2017 Jun 12.

28.

Expression of NKp46 Splice Variants in Nasal Lavage Following Respiratory Viral Infection: Domain 1-Negative Isoforms Predominate and Manifest Higher Activity.

Shemer-Avni Y, Kundu K, Shemesh A, Brusilovsky M, Yossef R, Meshesha M, Solomon-Alemayehu S, Levin S, Gershoni-Yahalom O, Campbell KS, Porgador A.

Front Immunol. 2017 Feb 15;8:161. doi: 10.3389/fimmu.2017.00161. eCollection 2017.

29.

GRIN3B missense mutation as an inherited risk factor for schizophrenia: whole-exome sequencing in a family with a familiar history of psychotic disorders.

Hornig T, Grüning B, Kundu K, Houwaart T, Backofen R, Biber K, Normann C.

Genet Res (Camb). 2017 Jan 30;99:e1. doi: 10.1017/S0016672316000148.

PMID:
28132660
30.

An Efficient Semi-supervised Learning Approach to Predict SH2 Domain Mediated Interactions.

Kundu K, Backofen R.

Methods Mol Biol. 2017;1555:83-97. doi: 10.1007/978-1-4939-6762-9_6.

PMID:
28092029
31.

Eimeria species occurrence varies between geographic regions and poultry production systems and may influence parasite genetic diversity.

Chengat Prakashbabu B, Thenmozhi V, Limon G, Kundu K, Kumar S, Garg R, Clark EL, Srinivasa Rao AS, Raj DG, Raman M, Banerjee PS, Tomley FM, Guitian J, Blake DP.

Vet Parasitol. 2017 Jan 15;233:62-72. doi: 10.1016/j.vetpar.2016.12.003. Epub 2016 Dec 6.

32.

The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.

Astle WJ, Elding H, Jiang T, Allen D, Ruklisa D, Mann AL, Mead D, Bouman H, Riveros-Mckay F, Kostadima MA, Lambourne JJ, Sivapalaratnam S, Downes K, Kundu K, Bomba L, Berentsen K, Bradley JR, Daugherty LC, Delaneau O, Freson K, Garner SF, Grassi L, Guerrero J, Haimel M, Janssen-Megens EM, Kaan A, Kamat M, Kim B, Mandoli A, Marchini J, Martens JHA, Meacham S, Megy K, O'Connell J, Petersen R, Sharifi N, Sheard SM, Staley JR, Tuna S, van der Ent M, Walter K, Wang SY, Wheeler E, Wilder SP, Iotchkova V, Moore C, Sambrook J, Stunnenberg HG, Di Angelantonio E, Kaptoge S, Kuijpers TW, Carrillo-de-Santa-Pau E, Juan D, Rico D, Valencia A, Chen L, Ge B, Vasquez L, Kwan T, Garrido-Martín D, Watt S, Yang Y, Guigo R, Beck S, Paul DS, Pastinen T, Bujold D, Bourque G, Frontini M, Danesh J, Roberts DJ, Ouwehand WH, Butterworth AS, Soranzo N.

Cell. 2016 Nov 17;167(5):1415-1429.e19. doi: 10.1016/j.cell.2016.10.042.

33.

Genetic Drivers of Epigenetic and Transcriptional Variation in Human Immune Cells.

Chen L, Ge B, Casale FP, Vasquez L, Kwan T, Garrido-Martín D, Watt S, Yan Y, Kundu K, Ecker S, Datta A, Richardson D, Burden F, Mead D, Mann AL, Fernandez JM, Rowlston S, Wilder SP, Farrow S, Shao X, Lambourne JJ, Redensek A, Albers CA, Amstislavskiy V, Ashford S, Berentsen K, Bomba L, Bourque G, Bujold D, Busche S, Caron M, Chen SH, Cheung W, Delaneau O, Dermitzakis ET, Elding H, Colgiu I, Bagger FO, Flicek P, Habibi E, Iotchkova V, Janssen-Megens E, Kim B, Lehrach H, Lowy E, Mandoli A, Matarese F, Maurano MT, Morris JA, Pancaldi V, Pourfarzad F, Rehnstrom K, Rendon A, Risch T, Sharifi N, Simon MM, Sultan M, Valencia A, Walter K, Wang SY, Frontini M, Antonarakis SE, Clarke L, Yaspo ML, Beck S, Guigo R, Rico D, Martens JHA, Ouwehand WH, Kuijpers TW, Paul DS, Stunnenberg HG, Stegle O, Downes K, Pastinen T, Soranzo N.

Cell. 2016 Nov 17;167(5):1398-1414.e24. doi: 10.1016/j.cell.2016.10.026.

34.

False-Positive Cystoscopic Diagnosis of Ureteral Obstruction After Hysterectomy Due to a Non-Functional Kidney.

Kundu K, Martin L, Henderson S, Goldberg J, Metro M, Rodgers S.

J Minim Invasive Gynecol. 2015 Nov-Dec;22(6S):S220-S221. doi: 10.1016/j.jmig.2015.08.782. Epub 2015 Oct 15. No abstract available.

PMID:
27679092
35.

Cryptic Eimeria genotypes are common across the southern but not northern hemisphere.

Clark EL, Macdonald SE, Thenmozhi V, Kundu K, Garg R, Kumar S, Ayoade S, Fornace KM, Jatau ID, Moftah A, Nolan MJ, Sudhakar NR, Adebambo AO, Lawal IA, Álvarez Zapata R, Awuni JA, Chapman HD, Karimuribo E, Mugasa CM, Namangala B, Rushton J, Suo X, Thangaraj K, Srinivasa Rao AS, Tewari AK, Banerjee PS, Dhinakar Raj G, Raman M, Tomley FM, Blake DP.

Int J Parasitol. 2016 Aug;46(9):537-44. doi: 10.1016/j.ijpara.2016.05.006. Epub 2016 Jun 29.

36.

Prevalence of leprosy-related disability in Bangladesh.

Butlin CR, Kundu K, Hossain D, Singh S, Warrender TS.

Lepr Rev. 2016 Jun;87(2):264-66.

PMID:
30212173
37.

Performance and exhaust emission characteristics of variable compression ratio diesel engine fuelled with esters of crude rice bran oil.

Vasudeva M, Sharma S, Mohapatra SK, Kundu K.

Springerplus. 2016 Mar 8;5:293. doi: 10.1186/s40064-016-1945-7. eCollection 2016.

38.

Cardiovascular health awareness and the effect of an educational intervention on school-aged children in a rural district of India.

Ray M, Guha S, Ray M, Kundu A, Ray B, Kundu K, Goswami S, Bhatt DL, Selker HP, Goldberg RJ.

Indian Heart J. 2016 Jan-Feb;68(1):43-7. doi: 10.1016/j.ihj.2015.10.302. Epub 2016 Jan 11.

39.

Recognition of steric factor in external association of xanthenocrown-5 and bis-napthalenocrown-6 with bis(benzimidazolium)propane borontetrafluoride.

Karmakar A, Kundu K, Ghosh S, Mukhopadhyay C, Nayak SK, Chaudhuri T.

Spectrochim Acta A Mol Biomol Spectrosc. 2016 Apr 15;159:141-5. doi: 10.1016/j.saa.2016.01.037. Epub 2016 Jan 25.

PMID:
26836456
40.

Decontamination of heavy metal laden sewage sludge with simultaneous solids reduction using thermophilic sulfur and ferrous oxidizing species.

Mehrotra A, Kundu K, Sreekrishnan TR.

J Environ Manage. 2016 Feb 1;167:228-35. doi: 10.1016/j.jenvman.2015.11.004.

PMID:
26686075
41.

Systemic Staphylococcus aureus infection in restraint stressed mice modulates impaired immune response resulting in improved behavioral activities.

Mahanti S, Majhi A, Kundu K, Basu A, Bishayi B.

J Neuroimmunol. 2015 Nov 15;288:102-13. doi: 10.1016/j.jneuroim.2015.09.003. Epub 2015 Sep 14.

PMID:
26531702
42.

Genetic diversity within ITS-1 region of Eimeria species infecting chickens of north India.

Kumar S, Garg R, Banerjee PS, Ram H, Kundu K, Kumar S, Mandal M.

Infect Genet Evol. 2015 Dec;36:262-267. doi: 10.1016/j.meegid.2015.09.023. Epub 2015 Sep 28.

PMID:
26423669
43.

Population, genetic, and antigenic diversity of the apicomplexan Eimeria tenella and their relevance to vaccine development.

Blake DP, Clark EL, Macdonald SE, Thenmozhi V, Kundu K, Garg R, Jatau ID, Ayoade S, Kawahara F, Moftah A, Reid AJ, Adebambo AO, Álvarez Zapata R, Srinivasa Rao AS, Thangaraj K, Banerjee PS, Dhinakar-Raj G, Raman M, Tomley FM.

Proc Natl Acad Sci U S A. 2015 Sep 22;112(38):E5343-50. doi: 10.1073/pnas.1506468112. Epub 2015 Sep 9.

44.

In Vivo Imaging of Retinal Oxidative Stress Using a Reactive Oxygen Species-Activated Fluorescent Probe.

Prunty MC, Aung MH, Hanif AM, Allen RS, Chrenek MA, Boatright JH, Thule PM, Kundu K, Murthy N, Pardue MT.

Invest Ophthalmol Vis Sci. 2015 Sep;56(10):5862-70. doi: 10.1167/iovs.15-16810.

45.

Cloning and sequencing of beta-tubulin and internal transcribed spacer-2 (ITS-2) of Eimeria tenella isolate from India.

Kundu K, Banerjee PS, Garg R, Kumar S, Mandal M, Maurya PS, Tomley F, Blake D.

J Parasit Dis. 2015 Sep;39(3):539-44. doi: 10.1007/s12639-013-0392-4. Epub 2013 Dec 1.

46.

Mycofabrication of gold nanoparticles and evaluation of their antioxidant activities.

Chakravarty I, Pradeepam RJ, Kundu K, Singh PK, Kundu S.

Curr Pharm Biotechnol. 2015;16(8):747-55.

PMID:
26044865
47.

False-Positive Cystoscopic Diagnosis of Ureteral Obstruction After Hysterectomy Due to a Nonfunctional Kidney.

Kundu K, Martin L, Henderson S, Metro M, Rodgers S, Goldberg J.

Obstet Gynecol. 2015 Sep;126(3):635-7. doi: 10.1097/AOG.0000000000000786.

PMID:
25923025
48.

Electron spin relaxation of C60 monoanion in liquid solution: applicability of Kivelson-Orbach mechanism.

Kundu K, Kattnig DR, Mladenova B, Grampp G, Das R.

J Phys Chem A. 2015 Apr 2;119(13):3200-8. doi: 10.1021/jp5126409. Epub 2015 Mar 19.

PMID:
25789609
49.

Electron spin-lattice relaxation mechanisms of nitroxyl radicals in ionic liquids and conventional organic liquids: temperature dependence of a thermally activated process.

Kundu K, Kattnig DR, Mladenova BY, Grampp G, Das R.

J Phys Chem B. 2015 Mar 26;119(12):4501-11. doi: 10.1021/acs.jpcb.5b00431. Epub 2015 Mar 16.

PMID:
25775000
50.

Clinical manifestations of leprosy after BCG vaccination: an observational study in Bangladesh.

Richardus RA, Butlin CR, Alam K, Kundu K, Geluk A, Richardus JH.

Vaccine. 2015 Mar 24;33(13):1562-7. doi: 10.1016/j.vaccine.2015.02.017. Epub 2015 Feb 18.

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