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Items: 49

1.

Long-range heteronuclear J-coupling constants in esters: Implications for 13C metabolic MRI by side-arm parahydrogen-induced polarization.

Stewart NJ, Kumeta H, Tomohiro M, Hashimoto T, Hatae N, Matsumoto S.

J Magn Reson. 2018 Nov;296:85-92. doi: 10.1016/j.jmr.2018.08.009. Epub 2018 Aug 29.

PMID:
30223155
2.

Structural insight into proline cis/trans isomerization of unfolded proteins catalyzed by the trigger factor chaperone.

Kawagoe S, Nakagawa H, Kumeta H, Ishimori K, Saio T.

J Biol Chem. 2018 Sep 28;293(39):15095-15106. doi: 10.1074/jbc.RA118.003579. Epub 2018 Aug 9.

3.

Solution structure of the major fish allergen parvalbumin Sco j 1 derived from the Pacific mackerel.

Kumeta H, Nakayama H, Ogura K.

Sci Rep. 2017 Dec 7;7(1):17160. doi: 10.1038/s41598-017-17281-6.

4.

Production of Single-Chain Fv Antibodies Specific for GA-Pyridine, an Advanced Glycation End-Product (AGE), with Reduced Inter-Domain Motion.

Fukuda N, Noi K, Weng L, Kobashigawa Y, Miyazaki H, Wakeyama Y, Takaki M, Nakahara Y, Tatsuno Y, Uchida-Kamekura M, Suwa Y, Sato T, Ichikawa-Tomikawa N, Nomizu M, Fujiwara Y, Ohsaka F, Saitoh T, Maenaka K, Kumeta H, Shinya S, Kojima C, Ogura T, Morioka H.

Molecules. 2017 Oct 10;22(10). pii: E1695. doi: 10.3390/molecules22101695.

5.

Biophysical characterization of drug-resistant mutants of fibroblast growth factor receptor 1.

Yoza K, Himeno R, Amano S, Kobashigawa Y, Amemiya S, Fukuda N, Kumeta H, Morioka H, Inagaki F.

Genes Cells. 2016 Oct;21(10):1049-1058. doi: 10.1111/gtc.12405. Epub 2016 Aug 25.

6.

Structural Basis for Receptor-Mediated Selective Autophagy of Aminopeptidase I Aggregates.

Yamasaki A, Watanabe Y, Adachi W, Suzuki K, Matoba K, Kirisako H, Kumeta H, Nakatogawa H, Ohsumi Y, Inagaki F, Noda NN.

Cell Rep. 2016 Jun 28;16(1):19-27. doi: 10.1016/j.celrep.2016.05.066. Epub 2016 Jun 16.

7.

Structural basis for the regulation of enzymatic activity of Regnase-1 by domain-domain interactions.

Yokogawa M, Tsushima T, Noda NN, Kumeta H, Enokizono Y, Yamashita K, Standley DM, Takeuchi O, Akira S, Inagaki F.

Sci Rep. 2016 Mar 1;6:22324. doi: 10.1038/srep22324.

8.

Nuclear magnetic resonance analysis of the conformational state of cancer mutant of fibroblast growth factor receptor 1 tyrosine kinase domain.

Kobashigawa Y, Amano S, Yoza K, Himeno R, Amemiya S, Morioka H, Yokogawa M, Kumeta H, Schlessinger J, Inagaki F.

Genes Cells. 2016 Apr;21(4):350-7. doi: 10.1111/gtc.12345. Epub 2016 Feb 10.

9.

Investigation of the redox-dependent modulation of structure and dynamics in human cytochrome c.

Imai M, Saio T, Kumeta H, Uchida T, Inagaki F, Ishimori K.

Biochem Biophys Res Commun. 2016 Jan 22;469(4):978-84. doi: 10.1016/j.bbrc.2015.12.079. Epub 2015 Dec 22.

PMID:
26718409
10.

Ligand-driven conformational changes of MurD visualized by paramagnetic NMR.

Saio T, Ogura K, Kumeta H, Kobashigawa Y, Shimizu K, Yokochi M, Kodama K, Yamaguchi H, Tsujishita H, Inagaki F.

Sci Rep. 2015 Nov 19;5:16685. doi: 10.1038/srep16685.

11.

Structural analysis of the mechanism of phosphorylation of a critical autoregulatory tyrosine residue in FGFR1 kinase domain.

Kobashigawa Y, Amano S, Yokogawa M, Kumeta H, Morioka H, Inouye M, Schlessinger J, Inagaki F.

Genes Cells. 2015 Oct;20(10):860-70. doi: 10.1111/gtc.12277. Epub 2015 Aug 24.

12.

The N-terminal domain of TIR domain-containing adaptor molecule-1, TICAM-1.

Kumeta H, Sakakibara H, Enokizono Y, Ogura K, Horiuchi M, Matsumoto M, Seya T, Inagaki F.

J Biomol NMR. 2014 Mar;58(3):227-30. doi: 10.1007/s10858-014-9819-1. Epub 2014 Feb 6. No abstract available.

PMID:
24500696
13.

Structures and interface mapping of the TIR domain-containing adaptor molecules involved in interferon signaling.

Enokizono Y, Kumeta H, Funami K, Horiuchi M, Sarmiento J, Yamashita K, Standley DM, Matsumoto M, Seya T, Inagaki F.

Proc Natl Acad Sci U S A. 2013 Dec 3;110(49):19908-13. doi: 10.1073/pnas.1222811110. Epub 2013 Nov 19.

14.

Practical applications of hydrostatic pressure to refold proteins from inclusion bodies for NMR structural studies.

Ogura K, Kobashigawa Y, Saio T, Kumeta H, Torikai S, Inagaki F.

Protein Eng Des Sel. 2013 Jun;26(6):409-16. doi: 10.1093/protein/gzt012. Epub 2013 Mar 22.

PMID:
23525046
15.

NMR structure note: a defective isoform and its activity-improved variant of a type III antifreeze protein from Zoarces elongates Kner.

Kumeta H, Ogura K, Nishimiya Y, Miura A, Inagaki F, Tsuda S.

J Biomol NMR. 2013 Feb;55(2):225-30. doi: 10.1007/s10858-012-9703-9. Epub 2013 Jan 4. No abstract available.

16.

Tertiary structure-function analysis reveals the pathogenic signaling potentiation mechanism of Helicobacter pylori oncogenic effector CagA.

Hayashi T, Senda M, Morohashi H, Higashi H, Horio M, Kashiba Y, Nagase L, Sasaya D, Shimizu T, Venugopalan N, Kumeta H, Noda NN, Inagaki F, Senda T, Hatakeyama M.

Cell Host Microbe. 2012 Jul 19;12(1):20-33. doi: 10.1016/j.chom.2012.05.010.

17.

Structural insights into Atg10-mediated formation of the autophagy-essential Atg12-Atg5 conjugate.

Yamaguchi M, Noda NN, Yamamoto H, Shima T, Kumeta H, Kobashigawa Y, Akada R, Ohsumi Y, Inagaki F.

Structure. 2012 Jul 3;20(7):1244-54. doi: 10.1016/j.str.2012.04.018. Epub 2012 Jun 7.

18.

Solution structures of yeast Saccharomyces cerevisiae calmodulin in calcium- and target peptide-bound states reveal similarities and differences to vertebrate calmodulin.

Ogura K, Kumeta H, Takahasi K, Kobashigawa Y, Yoshida R, Itoh H, Yazawa M, Inagaki F.

Genes Cells. 2012 Mar;17(3):159-72. doi: 10.1111/j.1365-2443.2012.01580.x. Epub 2012 Jan 27.

19.

Autoinhibition and phosphorylation-induced activation mechanisms of human cancer and autoimmune disease-related E3 protein Cbl-b.

Kobashigawa Y, Tomitaka A, Kumeta H, Noda NN, Yamaguchi M, Inagaki F.

Proc Natl Acad Sci U S A. 2011 Dec 20;108(51):20579-84. doi: 10.1073/pnas.1110712108. Epub 2011 Dec 7.

20.

Structural basis of Atg8 activation by a homodimeric E1, Atg7.

Noda NN, Satoo K, Fujioka Y, Kumeta H, Ogura K, Nakatogawa H, Ohsumi Y, Inagaki F.

Mol Cell. 2011 Nov 4;44(3):462-75. doi: 10.1016/j.molcel.2011.08.035.

21.

Selective transport of alpha-mannosidase by autophagic pathways: structural basis for cargo recognition by Atg19 and Atg34.

Watanabe Y, Noda NN, Kumeta H, Suzuki K, Ohsumi Y, Inagaki F.

J Biol Chem. 2010 Sep 24;285(39):30026-33. doi: 10.1074/jbc.M110.143545. Epub 2010 Jul 21.

22.

Autophagy-related protein 8 (Atg8) family interacting motif in Atg3 mediates the Atg3-Atg8 interaction and is crucial for the cytoplasm-to-vacuole targeting pathway.

Yamaguchi M, Noda NN, Nakatogawa H, Kumeta H, Ohsumi Y, Inagaki F.

J Biol Chem. 2010 Sep 17;285(38):29599-607. doi: 10.1074/jbc.M110.113670. Epub 2010 Jul 8.

23.

Structure determination of proteins in 2H2O solution aided by a deuterium-decoupled 3D HCA(N)CO experiment.

Ogura K, Kumeta H, Inagaki F.

J Biomol NMR. 2010 Aug;47(4):243-8. doi: 10.1007/s10858-010-9431-y. Epub 2010 Jun 24.

PMID:
20574814
24.

The NMR structure of the autophagy-related protein Atg8.

Kumeta H, Watanabe M, Nakatogawa H, Yamaguchi M, Ogura K, Adachi W, Fujioka Y, Noda NN, Ohsumi Y, Inagaki F.

J Biomol NMR. 2010 Jul;47(3):237-41. doi: 10.1007/s10858-010-9420-1. Epub 2010 Apr 29. No abstract available.

PMID:
20428927
25.

Solution structure of a novel Cdc42 binding module of Bem1 and its interaction with Ste20 and Cdc42.

Takaku T, Ogura K, Kumeta H, Yoshida N, Inagaki F.

J Biol Chem. 2010 Jun 18;285(25):19346-53. doi: 10.1074/jbc.M110.116749. Epub 2010 Apr 21.

26.

PCS-based structure determination of protein-protein complexes.

Saio T, Yokochi M, Kumeta H, Inagaki F.

J Biomol NMR. 2010 Apr;46(4):271-80. doi: 10.1007/s10858-010-9401-4. Epub 2010 Mar 19.

27.

The NMR structure of protein-glutaminase from Chryseobacterium proteolyticum.

Kumeta H, Miwa N, Ogura K, Kai Y, Mizukoshi T, Shimba N, Suzuki E, Inagaki F.

J Biomol NMR. 2010 Mar;46(3):251-5. doi: 10.1007/s10858-010-9399-7. Epub 2010 Feb 27. No abstract available.

PMID:
20195702
28.

Solution structure of the silkworm betaGRP/GNBP3 N-terminal domain reveals the mechanism for beta-1,3-glucan-specific recognition.

Takahasi K, Ochiai M, Horiuchi M, Kumeta H, Ogura K, Ashida M, Inagaki F.

Proc Natl Acad Sci U S A. 2009 Jul 14;106(28):11679-84. doi: 10.1073/pnas.0901671106. Epub 2009 Jun 26.

29.

NMR structure of the heterodimer of Bem1 and Cdc24 PB1 domains from Saccharomyces cerevisiae.

Ogura K, Tandai T, Yoshinaga S, Kobashigawa Y, Kumeta H, Ito T, Sumimoto H, Inagaki F.

J Biochem. 2009 Sep;146(3):317-25. doi: 10.1093/jb/mvp075. Epub 2009 May 18.

PMID:
19451149
30.

The NMR structure of the TC10- and Cdc42-interacting domain of CIP4.

Kobashigawa Y, Kumeta H, Kanoh D, Inagaki F.

J Biomol NMR. 2009 Jun;44(2):113-8. doi: 10.1007/s10858-009-9317-z. Epub 2009 Apr 22. No abstract available.

PMID:
19387844
31.

Solution structures of cytosolic RNA sensor MDA5 and LGP2 C-terminal domains: identification of the RNA recognition loop in RIG-I-like receptors.

Takahasi K, Kumeta H, Tsuduki N, Narita R, Shigemoto T, Hirai R, Yoneyama M, Horiuchi M, Ogura K, Fujita T, Inagaki F.

J Biol Chem. 2009 Jun 26;284(26):17465-74. doi: 10.1074/jbc.M109.007179. Epub 2009 Apr 20.

32.

The structure of Atg4B-LC3 complex reveals the mechanism of LC3 processing and delipidation during autophagy.

Satoo K, Noda NN, Kumeta H, Fujioka Y, Mizushima N, Ohsumi Y, Inagaki F.

EMBO J. 2009 May 6;28(9):1341-50. doi: 10.1038/emboj.2009.80. Epub 2009 Mar 26.

33.

Attachment of an NMR-invisible solubility enhancement tag using a sortase-mediated protein ligation method.

Kobashigawa Y, Kumeta H, Ogura K, Inagaki F.

J Biomol NMR. 2009 Mar;43(3):145-50. doi: 10.1007/s10858-008-9296-5. Epub 2009 Jan 13.

PMID:
19140010
34.

Structural basis of target recognition by Atg8/LC3 during selective autophagy.

Noda NN, Kumeta H, Nakatogawa H, Satoo K, Adachi W, Ishii J, Fujioka Y, Ohsumi Y, Inagaki F.

Genes Cells. 2008 Dec;13(12):1211-8. doi: 10.1111/j.1365-2443.2008.01238.x. Epub 2008 Oct 22.

35.

The NMR structure of the NIPP1 FHA domain.

Kumeta H, Ogura K, Adachi S, Fujioka Y, Tanuma N, Kikuchi K, Inagaki F.

J Biomol NMR. 2008 Mar;40(3):219-24. doi: 10.1007/s10858-008-9222-x. Epub 2008 Feb 6. No abstract available. Erratum in: J Biomol NMR. 2008 Mar;40(3):225. Tanuma, Kiminobu [corrected to Tanuma, Nobuhiro].

PMID:
18253837
36.

Nonself RNA-sensing mechanism of RIG-I helicase and activation of antiviral immune responses.

Takahasi K, Yoneyama M, Nishihori T, Hirai R, Kumeta H, Narita R, Gale M Jr, Inagaki F, Fujita T.

Mol Cell. 2008 Feb 29;29(4):428-40. doi: 10.1016/j.molcel.2007.11.028. Epub 2008 Jan 31.

37.

The cooperative role of OsCnfU-1A domain I and domain II in the iron sulphur cluster transfer process as revealed by NMR.

Saio T, Kumeta H, Ogura K, Yokochi M, Asayama M, Katoh S, Katoh E, Teshima K, Inagaki F.

J Biochem. 2007 Jul;142(1):113-21. Epub 2007 Jun 1.

PMID:
17545250
38.

Structural basis for the transforming activity of human cancer-related signaling adaptor protein CRK.

Kobashigawa Y, Sakai M, Naito M, Yokochi M, Kumeta H, Makino Y, Ogura K, Tanaka S, Inagaki F.

Nat Struct Mol Biol. 2007 Jun;14(6):503-10. Epub 2007 May 21.

PMID:
17515907
39.

The NMR structure of the domain II of a chloroplastic NifU-like protein OsNifU1A.

Kumeta H, Ogura K, Asayama M, Katoh S, Katoh E, Teshima K, Inagaki F.

J Biomol NMR. 2007 Jun;38(2):161-4. Epub 2007 Apr 13.

PMID:
17431550
40.

[Progress in NMR structure analysis of proteins].

Kumeta H, Inagaki F.

Seikagaku. 2007 Jan;79(1):55-60. Review. Japanese. No abstract available.

PMID:
17319516
41.

The crystal structure of Atg3, an autophagy-related ubiquitin carrier protein (E2) enzyme that mediates Atg8 lipidation.

Yamada Y, Suzuki NN, Hanada T, Ichimura Y, Kumeta H, Fujioka Y, Ohsumi Y, Inagaki F.

J Biol Chem. 2007 Mar 16;282(11):8036-43. Epub 2007 Jan 16.

42.

Refolding and purification of recombinant OsNifU1A domain II that was expressed by Escherichia coli.

Katoh S, Murata K, Kubota Y, Kumeta H, Ogura K, Inagaki F, Asayama M, Katoh E.

Protein Expr Purif. 2005 Oct;43(2):149-56.

PMID:
15978837
43.

Low-temperature-induced structural changes in human lysozyme elucidated by three-dimensional NMR spectroscopy.

Kumeta H, Miura A, Kobashigawa Y, Miura K, Oka C, Nemoto N, Nitta K, Tsuda S.

Biochemistry. 2003 Feb 11;42(5):1209-16.

PMID:
12564923
44.

Assignments of 1H, 13C, and 15N resonances of human lysozyme at 4 degrees C.

Kumeta H, Kobashigawa Y, Miura K, Nishimiya Y, Oka C, Nemoto N, Miura A, Nitta K, Tsuda S.

J Biomol NMR. 2002 Feb;22(2):183-4. No abstract available.

PMID:
11883780
45.

Identification of a member of the serralysin family isolated from a psychrotrophic bacterium, Pseudomonas fluorescens 114.

Kumeta H, Hoshino T, Goda T, Okayama T, Shimada T, Ohgiya S, Matsuyama H, Ishizaki K.

Biosci Biotechnol Biochem. 1999 Jul;63(7):1165-70.

46.

Natural history of scoliosis in spastic cerebral palsy.

Saito N, Ebara S, Ohotsuka K, Kumeta H, Takaoka K.

Lancet. 1998 Jun 6;351(9117):1687-92.

PMID:
9734885
47.

Isolation of a Pseudomonas species from fish intestine that produces a protease active at low temperature.

Hoshino T, Ishizaki K, Sakamoto T, Kumeta H, Yumoto I, Matsuyama H, Ohgiya S.

Lett Appl Microbiol. 1997 Jul;25(1):70-2.

48.

[Histological studies of the mouse palate. Formation of the incisive suture].

Sukekawa R, Sato K, Kumeta H, Nisiyama K, Ito I.

Shika Kiso Igakkai Zasshi. 1989 Jun;31(3):302-7. Japanese.

PMID:
2519272
49.

[Malignant hyperthermia; two cases of MH in the presence of general anesthesia and performing caffeine contracture test].

Tateishi M, Sumita S, Watanabe H, Kumeta H, Narimatsu E, Namiki A.

Masui. 1989 Apr;38(4):546-51. Japanese.

PMID:
2724520

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