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Items: 1 to 50 of 321

1.

Progressive multifocal leukoencephalopathy in a patient with primary amyloid light-chain amyloidosis.

Katsuse K, Akiyama K, Ishida T, Kitayama C, Ishibashi Y, Ochi M, Kumasaka T, Takahashi K, Suzuki T, Nakamichi K, Saijo M, Hashida H.

Clin Neurol Neurosurg. 2020 Feb 3;192:105709. doi: 10.1016/j.clineuro.2020.105709. [Epub ahead of print]

PMID:
32058201
2.

Development of SPACE-II for rapid sample exchange at SPring-8 macromolecular crystallography beamlines.

Murakami H, Hasegawa K, Ueno G, Yagi N, Yamamoto M, Kumasaka T.

Acta Crystallogr D Struct Biol. 2020 Feb 1;76(Pt 2):155-165. doi: 10.1107/S2059798320000030. Epub 2020 Jan 31.

PMID:
32038046
3.

Hemophagocytic Lymphohistiocytosis in a Patient with Rheumatoid Arthritis on Pembrolizumab for Lung Adenocarcinoma.

Akagi Y, Awano N, Inomata M, Kuse N, Tone M, Yoshimura H, Jo T, Takada K, Kumasaka T, Izumo T.

Intern Med. 2020 Feb 1. doi: 10.2169/internalmedicine.3889-19. [Epub ahead of print]

4.

Anti-MDA5 Antibody-positive Clinically Amyopathic Dermatomyositis Complicated by Unilateral Right-sided Interstitial Lung Disease.

Kori M, Awano N, Inomata M, Kuse N, Tone M, Yoshimura H, Jo T, Takada K, Kumasaka T, Takemura T, Izumo T.

Intern Med. 2020;59(3):401-408. doi: 10.2169/internalmedicine.3604-19. Epub 2020 Feb 1.

5.

Diagnosis and outcome of resected solitary pulmonary nodules after liver transplantation.

Tone M, Awano N, Izumo T, Yoshimura H, Jo T, Kuse N, Inomata M, Fukumoto K, Furuhata Y, Hashimoto T, Kumasaka T, Kunitoh H.

Jpn J Clin Oncol. 2019 Nov 5. pii: hyz159. doi: 10.1093/jjco/hyz159. [Epub ahead of print]

PMID:
31688936
6.

An oxyl/oxo mechanism for oxygen-oxygen coupling in PSII revealed by an x-ray free-electron laser.

Suga M, Akita F, Yamashita K, Nakajima Y, Ueno G, Li H, Yamane T, Hirata K, Umena Y, Yonekura S, Yu LJ, Murakami H, Nomura T, Kimura T, Kubo M, Baba S, Kumasaka T, Tono K, Yabashi M, Isobe H, Yamaguchi K, Yamamoto M, Ago H, Shen JR.

Science. 2019 Oct 18;366(6463):334-338. doi: 10.1126/science.aax6998. Epub 2019 Oct 17.

PMID:
31624207
7.

A temperature-controlled cold-gas humidifier and its application to protein crystals with the humid-air and glue-coating method.

Baba S, Shimada A, Mizuno N, Baba J, Ago H, Yamamoto M, Kumasaka T.

J Appl Crystallogr. 2019 Jun 14;52(Pt 4):699-705. doi: 10.1107/S1600576719006435. eCollection 2019 Aug 1.

8.

Low-dose X-ray structure analysis of cytochrome c oxidase utilizing high-energy X-rays.

Ueno G, Shimada A, Yamashita E, Hasegawa K, Kumasaka T, Shinzawa-Itoh K, Yoshikawa S, Tsukihara T, Yamamoto M.

J Synchrotron Radiat. 2019 Jul 1;26(Pt 4):912-921. doi: 10.1107/S1600577519006805. Epub 2019 Jun 14.

9.

Diagnostic utility of transbronchial lung cryobiopsy: Two cases of anti-aminoacyl-tRNA synthetase syndrome with respiratory failure.

Yoshimura H, Awano N, Inomata M, Kuse N, Tone M, Jo T, Takemura T, Kumasaka T, Izumo T.

Respir Investig. 2019 Jul;57(4):399-403. doi: 10.1016/j.resinv.2019.03.002. Epub 2019 May 1.

PMID:
31054836
10.

ZOO: an automatic data-collection system for high-throughput structure analysis in protein microcrystallography.

Hirata K, Yamashita K, Ueno G, Kawano Y, Hasegawa K, Kumasaka T, Yamamoto M.

Acta Crystallogr D Struct Biol. 2019 Feb 1;75(Pt 2):138-150. doi: 10.1107/S2059798318017795. Epub 2019 Jan 28.

11.

Management and utility of transbronchial lung cryobiopsy in Japan.

Kuse N, Inomata M, Awano N, Yoshimura H, Jo T, Tone M, Moriya A, Bae Y, Kumasaka T, Takemura T, Izumo T.

Respir Investig. 2019 May;57(3):245-251. doi: 10.1016/j.resinv.2018.12.011. Epub 2019 Feb 10.

PMID:
30745273
12.

In crystallo thermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase.

Murakawa T, Baba S, Kawano Y, Hayashi H, Yano T, Kumasaka T, Yamamoto M, Tanizawa K, Okajima T.

Proc Natl Acad Sci U S A. 2019 Jan 2;116(1):135-140. doi: 10.1073/pnas.1811837116. Epub 2018 Dec 18.

13.

The combination of EBUS-TBNA and the PAB antibody led to a successful treatment for lung cancer in a patient with asymptomatic sarcoidosis mimicking nodal metastasis.

Tone M, Awano N, Inomata M, Kuse N, Jo T, Yoshimura H, Furuhata Y, Takemura T, Kumasaka T, Izumo T.

Respir Med Case Rep. 2018 Oct 18;25:296-299. doi: 10.1016/j.rmcr.2018.10.014. eCollection 2018.

14.

Complex formation of sphingomyelin synthase 1 with glucosylceramide synthase increases sphingomyelin and decreases glucosylceramide levels.

Hayashi Y, Nemoto-Sasaki Y, Matsumoto N, Hama K, Tanikawa T, Oka S, Saeki T, Kumasaka T, Koizumi T, Arai S, Wada I, Yokoyama K, Sugiura T, Yamashita A.

J Biol Chem. 2018 Nov 9;293(45):17505-17522. doi: 10.1074/jbc.RA118.002048. Epub 2018 Sep 21.

15.

Intratumoral Hemorrhage of Liver Metastasis from a Rectal Neuroendocrine Tumor.

Hatanaka T, Naganuma A, Saito T, Hoshino T, Kakizaki S, Kumasaka T, Takamoto T, Makuuchi M.

Intern Med. 2019 Jan 15;58(2):217-223. doi: 10.2169/internalmedicine.1140-18. Epub 2018 Sep 12.

16.
17.

Changes in telomere length with aging in human neurons and glial cells revealed by quantitative fluorescence in situ hybridization analysis.

Tomita KI, Aida J, Izumiyama-Shimomura N, Nakamura KI, Ishikawa N, Matsuda Y, Arai T, Ishiwata T, Kumasaka T, Takahashi-Fujigasaki J, Hiraishi N, Yamada M, Fujiwara M, Takubo K.

Geriatr Gerontol Int. 2018 Oct;18(10):1507-1512. doi: 10.1111/ggi.13500. Epub 2018 Aug 10.

PMID:
30095207
18.

A total pleural covering of absorbable cellulose mesh prevents pneumothorax recurrence in patients with Birt-Hogg-Dubé syndrome.

Mizobuchi T, Kurihara M, Ebana H, Yamanaka S, Kataoka H, Okamoto S, Kobayashi E, Kumasaka T, Seyama K.

Orphanet J Rare Dis. 2018 May 15;13(1):78. doi: 10.1186/s13023-018-0790-x.

19.

Multiple zinc ions maintain the open conformation of the catalytic site in the DNA mismatch repair endonuclease MutL from Aquifex aeolicus.

Fukui K, Baba S, Kumasaka T, Yano T.

FEBS Lett. 2018 May;592(9):1611-1619. doi: 10.1002/1873-3468.13050. Epub 2018 Apr 22.

20.

Analysis of oscillatory rocking curve by dynamical diffraction in protein crystals.

Suzuki R, Koizumi H, Hirano K, Kumasaka T, Kojima K, Tachibana M.

Proc Natl Acad Sci U S A. 2018 Apr 3;115(14):3634-3639. doi: 10.1073/pnas.1720098115. Epub 2018 Mar 21.

21.

The Significant Antitumor Activity of Nivolumab in Lung Adenocarcinoma with Choriocarcinomatous Features.

Ochi M, Miyamoto S, Terada Y, Furuhata Y, Awano N, Izumo T, Ikushima S, Bae Y, Kumasaka T, Kunito H.

Intern Med. 2018 Jun 15;57(12):1773-1777. doi: 10.2169/internalmedicine.0002-17. Epub 2018 Feb 9.

22.

Influence of ultraviolet irradiation treatment on porcelain bond strength of titanium surfaces.

Kumasaka T, Ohno A, Hori N, Hoshi N, Maruo K, Kuwabara A, Seimiya K, Toyoda M, Kimoto K.

Dent Mater J. 2018 Jun 8;37(3):422-428. doi: 10.4012/dmj.2016-417. Epub 2018 Jan 26.

23.

Is hypothyroidism in idiopathic pleuroparenchymal fibroelastosis a novel lung-thyroid syndrome?

Awano N, Izumo T, Fukuda K, Tone M, Yamada D, Takemura T, Ikushima S, Kumasaka T.

Respir Investig. 2018 Jan;56(1):48-56. doi: 10.1016/j.resinv.2017.08.010. Epub 2017 Oct 7.

PMID:
29325681
24.

Unpaired Electron Spin Density Distribution across Reduced [2Fe-2S] Cluster Ligands by 13Cβ-Cysteine Labeling.

Taguchi AT, Miyajima-Nakano Y, Fukazawa R, Lin MT, Baldansuren A, Gennis RB, Hasegawa K, Kumasaka T, Dikanov SA, Iwasaki T.

Inorg Chem. 2018 Jan 16;57(2):741-746. doi: 10.1021/acs.inorgchem.7b02676. Epub 2017 Dec 26.

PMID:
29278328
25.

Skin lesions of Birt-Hogg-Dubé syndrome: Clinical and histopathological findings in 31 Japanese patients who presented with pneumothorax and/or multiple lung cysts.

Iwabuchi C, Ebana H, Ishiko A, Negishi A, Mizobuchi T, Kumasaka T, Kurihara M, Seyama K.

J Dermatol Sci. 2018 Jan;89(1):77-84. doi: 10.1016/j.jdermsci.2017.10.014. Epub 2017 Nov 2.

PMID:
29157599
26.

Recurrence of Ovarian Cancer with Placental Metastasis: A Case Report.

Honda M, Yamada M, Kumasaka T, Samejima T, Satoh H, Sugimoto M.

Case Rep Oncol. 2017 Sep 15;10(3):824-831. doi: 10.1159/000479959. eCollection 2017 Sep-Dec.

27.

Oxidized regenerated cellulose induces pleural thickening in patients with pneumothorax: possible involvement of the mesothelial-mesenchymal transition.

Ebana H, Hayashi T, Mitani K, Kobayashi E, Kumasaka T, Mizobuchi T, Kurihara M, Takahashi F, Takahashi K, Seyama K.

Surg Today. 2018 Apr;48(4):462-472. doi: 10.1007/s00595-017-1597-4. Epub 2017 Oct 12.

PMID:
29027010
28.

Crystallization and X-ray analysis of 23 nm virus-like particles from Norovirus Chiba strain.

Hasegawa K, Someya Y, Shigematsu H, Kimura-Someya T, Nuemket N, Kumasaka T.

Acta Crystallogr F Struct Biol Commun. 2017 Oct 1;73(Pt 10):568-573. doi: 10.1107/S2053230X17013759. Epub 2017 Oct 2.

29.

Protein microcrystallography using synchrotron radiation.

Yamamoto M, Hirata K, Yamashita K, Hasegawa K, Ueno G, Ago H, Kumasaka T.

IUCrJ. 2017 Aug 8;4(Pt 5):529-539. doi: 10.1107/S2052252517008193. eCollection 2017 Sep 1. Review.

30.

Efficacy and safety of stereotactic body radiotherapy using CyberKnife in Stage I primary lung tumor.

Awano N, Ikushima S, Izumo T, Tone M, Fukuda K, Miyamoto S, Bae Y, Kumasaka T, Terada Y, Furuhata Y, Nomura R, Sato K.

Jpn J Clin Oncol. 2017 Oct 1;47(10):969-975. doi: 10.1093/jjco/hyx100.

PMID:
28981731
31.

Structural transition of solvated H-Ras/GTP revealed by molecular dynamics simulation and local network entropy.

Matsunaga S, Hano Y, Saito Y, Fujimoto KJ, Kumasaka T, Matsumoto S, Kataoka T, Shima F, Tanaka S.

J Mol Graph Model. 2017 Oct;77:51-63. doi: 10.1016/j.jmgm.2017.07.028. Epub 2017 Jul 29.

PMID:
28837923
32.

A solute-binding protein in the closed conformation induces ATP hydrolysis in a bacterial ATP-binding cassette transporter involved in the import of alginate.

Kaneko A, Uenishi K, Maruyama Y, Mizuno N, Baba S, Kumasaka T, Mikami B, Murata K, Hashimoto W.

J Biol Chem. 2017 Sep 22;292(38):15681-15690. doi: 10.1074/jbc.M117.793992. Epub 2017 Aug 2.

33.

A nanosecond time-resolved XFEL analysis of structural changes associated with CO release from cytochrome c oxidase.

Shimada A, Kubo M, Baba S, Yamashita K, Hirata K, Ueno G, Nomura T, Kimura T, Shinzawa-Itoh K, Baba J, Hatano K, Eto Y, Miyamoto A, Murakami H, Kumasaka T, Owada S, Tono K, Yabashi M, Yamaguchi Y, Yanagisawa S, Sakaguchi M, Ogura T, Komiya R, Yan J, Yamashita E, Yamamoto M, Ago H, Yoshikawa S, Tsukihara T.

Sci Adv. 2017 Jul 14;3(7):e1603042. doi: 10.1126/sciadv.1603042. eCollection 2017 Jul.

34.

Structural basis for intramolecular interaction of post-translationally modified H-Ras•GTP prepared by protein ligation.

Ke H, Matsumoto S, Murashima Y, Taniguchi-Tamura H, Miyamoto R, Yoshikawa Y, Tsuda C, Kumasaka T, Mizohata E, Edamatsu H, Kataoka T.

FEBS Lett. 2017 Aug;591(16):2470-2481. doi: 10.1002/1873-3468.12759. Epub 2017 Aug 2.

35.

Pneumothorax caused by cystic and nodular lung metastases from a malignant uterine perivascular epithelioid cell tumor (PEComa).

Okamoto S, Komura M, Terao Y, Kurisaki-Arakawa A, Hayashi T, Saito T, Togo S, Shiokawa A, Mitani K, Kobayashi E, Kumasaka T, Takahashi K, Seyama K.

Respir Med Case Rep. 2017 Jun 27;22:77-82. doi: 10.1016/j.rmcr.2017.06.011. eCollection 2017.

36.

Crystal structure and DNA-binding property of the ATPase domain of bacterial mismatch repair endonuclease MutL from Aquifex aeolicus.

Fukui K, Iino H, Baba S, Kumasaka T, Kuramitsu S, Yano T.

Biochim Biophys Acta Proteins Proteom. 2017 Sep;1865(9):1178-1187. doi: 10.1016/j.bbapap.2017.06.024. Epub 2017 Jun 29.

PMID:
28668638
37.

Alteration of the α1β2/α2β1 subunit interface contributes to the increased hemoglobin-oxygen affinity of high-altitude deer mice.

Inoguchi N, Mizuno N, Baba S, Kumasaka T, Natarajan C, Storz JF, Moriyama H.

PLoS One. 2017 Mar 31;12(3):e0174921. doi: 10.1371/journal.pone.0174921. eCollection 2017.

38.

Crystal structure of a family 80 chitosanase from Mitsuaria chitosanitabida.

Yorinaga Y, Kumasaka T, Yamamoto M, Hamada K, Kawamukai M.

FEBS Lett. 2017 Feb;591(3):540-547. doi: 10.1002/1873-3468.12557. Epub 2017 Jan 29.

39.

Development of a dose-limiting data collection strategy for serial synchrotron rotation crystallography.

Hasegawa K, Yamashita K, Murai T, Nuemket N, Hirata K, Ueno G, Ago H, Nakatsu T, Kumasaka T, Yamamoto M.

J Synchrotron Radiat. 2017 Jan 1;24(Pt 1):29-41. doi: 10.1107/S1600577516016362. Epub 2017 Jan 1.

40.

Self-assembly of tetravalent Goldberg polyhedra from 144 small components.

Fujita D, Ueda Y, Sato S, Mizuno N, Kumasaka T, Fujita M.

Nature. 2016 Dec 21;540(7634):563-566. doi: 10.1038/nature20771.

PMID:
30905932
41.

Histological analysis of vasculopathy associated with pulmonary hypertension in combined pulmonary fibrosis and emphysema: comparison with idiopathic pulmonary fibrosis or emphysema alone.

Awano N, Inomata M, Ikushima S, Yamada D, Hotta M, Tsukuda S, Kumasaka T, Takemura T, Eishi Y.

Histopathology. 2017 May;70(6):896-905. doi: 10.1111/his.13153. Epub 2017 Feb 8.

PMID:
27992963
42.

Structural analyses of the nucleosome complexes with human testis-specific histone variants, hTh2a and hTh2b.

Padavattan S, Thiruselvam V, Shinagawa T, Hasegawa K, Kumasaka T, Ishii S, Kumarevel T.

Biophys Chem. 2017 Feb;221:41-48. doi: 10.1016/j.bpc.2016.11.013. Epub 2016 Dec 5.

PMID:
27992841
43.

Benign clear cell "sugar" tumor of the lung in a patient with Birt-Hogg-Dubé syndrome: a case report.

Gunji-Niitsu Y, Kumasaka T, Kitamura S, Hoshika Y, Hayashi T, Tokuda H, Morita R, Kobayashi E, Mitani K, Kikkawa M, Takahashi K, Seyama K.

BMC Med Genet. 2016 Nov 21;17(1):85.

44.

A Total Pleural Covering for Lymphangioleiomyomatosis Prevents Pneumothorax Recurrence.

Kurihara M, Mizobuchi T, Kataoka H, Sato T, Kumasaka T, Ebana H, Yamanaka S, Endo R, Miyahashira S, Shinya N, Seyama K.

PLoS One. 2016 Sep 22;11(9):e0163637. doi: 10.1371/journal.pone.0163637. eCollection 2016.

45.

Crystal structures of a subunit of the formylglycinamide ribonucleotide amidotransferase, PurS, from Thermus thermophilus, Sulfolobus tokodaii and Methanocaldococcus jannaschii.

Watanabe Y, Yanai H, Kanagawa M, Suzuki S, Tamura S, Okada K, Baba S, Kumasaka T, Agari Y, Chen L, Fu ZQ, Chrzas J, Wang BC, Nakagawa N, Ebihara A, Masui R, Kuramitsu S, Yokoyama S, Sampei GI, Kawai G.

Acta Crystallogr F Struct Biol Commun. 2016 Aug;72(Pt 8):627-35. doi: 10.1107/S2053230X1600978X. Epub 2016 Jul 27.

46.

Sarcoid Myositis with Anti-Ku Antibody Consistent with both Sarcoidosis and Polymyositis.

Awano N, Fukuda K, Sakayori M, Kondoh K, Ono R, Moriya A, Ando T, Kumasaka T, Takemura T, Ikushima S.

Intern Med. 2016;55(15):2049-53. doi: 10.2169/internalmedicine.55.5816. Epub 2016 Aug 1.

47.

Presence of Citrullinated Histone H3-Positive Neutrophils in Microscopic Polyangiitis from the Early Phase: An Autopsy Proven Case.

Matsuda Y, Hamayasu H, Seki A, Nonaka K, Wang T, Matsumoto T, Hamano Y, Sumikura H, Kumasaka T, Murayama S, Ishizu A, Shimizu A, Sugihara T, Arai T.

Pathol Int. 2016 Aug;66(8):466-71. doi: 10.1111/pin.12434. Epub 2016 Jul 18.

PMID:
27427341
48.

Structural Features and Functional Dependency on β-Clamp Define Distinct Subfamilies of Bacterial Mismatch Repair Endonuclease MutL.

Fukui K, Baba S, Kumasaka T, Yano T.

J Biol Chem. 2016 Aug 12;291(33):16990-7000. doi: 10.1074/jbc.M116.739664. Epub 2016 Jul 1.

49.

Systematic cytological evaluation and immunocytochemistry of minichromosome maintenance protein 2 and p53 significantly improve cytological diagnosis of pancreaticobiliary adenocarcinoma.

Abe N, Matsuo K, Kumasaka T, Naka K, Hashimoto S, Takemura T, Fujiwara M, Ito Y, Nakata R, Hashimoto T, Makuuchi M, Soejima Y, Sawabe M.

J Med Dent Sci. 2016;63(1):19-27. doi: 10.11480/jmds.630103.

50.

Molecular Mechanism for Conformational Dynamics of Ras·GTP Elucidated from In-Situ Structural Transition in Crystal.

Matsumoto S, Miyano N, Baba S, Liao J, Kawamura T, Tsuda C, Takeda A, Yamamoto M, Kumasaka T, Kataoka T, Shima F.

Sci Rep. 2016 May 16;6:25931. doi: 10.1038/srep25931.

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