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Items: 47

1.

Mechanism of FACT removal from transcribed genes by anticancer drugs curaxins.

Chang HW, Valieva ME, Safina A, Chereji RV, Wang J, Kulaeva OI, Morozov AV, Kirpichnikov MP, Feofanov AV, Gurova KV, Studitsky VM.

Sci Adv. 2018 Nov 7;4(11):eaav2131. doi: 10.1126/sciadv.aav2131. eCollection 2018 Nov.

2.

Nucleosome-free DNA regions differentially affect distant communication in chromatin.

Nizovtseva EV, Clauvelin N, Todolli S, Polikanov YS, Kulaeva OI, Wengrzynek S, Olson WK, Studitsky VM.

Nucleic Acids Res. 2017 Apr 7;45(6):3059-3067. doi: 10.1093/nar/gkw1240.

3.

Overcoming a nucleosomal barrier to replication.

Chang HW, Pandey M, Kulaeva OI, Patel SS, Studitsky VM.

Sci Adv. 2016 Nov 11;2(11):e1601865. eCollection 2016 Nov.

4.

Large-scale ATP-independent nucleosome unfolding by a histone chaperone.

Valieva ME, Armeev GA, Kudryashova KS, Gerasimova NS, Shaytan AK, Kulaeva OI, McCullough LL, Formosa T, Georgiev PG, Kirpichnikov MP, Studitsky VM, Feofanov AV.

Nat Struct Mol Biol. 2016 Dec;23(12):1111-1116. doi: 10.1038/nsmb.3321. Epub 2016 Nov 7.

5.

Transcription-induced DNA supercoiling: New roles of intranucleosomal DNA loops in DNA repair and transcription.

Gerasimova NS, Pestov NA, Kulaeva OI, Clark DJ, Studitsky VM.

Transcription. 2016 May 26;7(3):91-5. doi: 10.1080/21541264.2016.1182240. Epub 2016 Apr 26.

6.

[Structure and function of histone chaperone FACT].

Bondarenko MT, Maluchenko NV, Valieva ME, Gerasimova NS, Kulaeva OI, Georgiev PG, Studitsky VM.

Mol Biol (Mosk). 2015 Nov-Dec;49(6):891-904. doi: 10.7868/S0026898415060026. Review. Russian.

7.

Structure of transcribed chromatin is a sensor of DNA damage.

Pestov NA, Gerasimova NS, Kulaeva OI, Studitsky VM.

Sci Adv. 2015 Jul 3;1(6):e1500021. doi: 10.1126/sciadv.1500021. eCollection 2015 Jul.

8.

PARP1 Inhibitors: antitumor drug design.

Malyuchenko NV, Kotova EY, Kulaeva OI, Kirpichnikov MP, Studitskiy VM.

Acta Naturae. 2015 Jul-Sep;7(3):27-37.

9.

Structural analysis of nucleosomal barrier to transcription.

Gaykalova DA, Kulaeva OI, Volokh O, Shaytan AK, Hsieh FK, Kirpichnikov MP, Sokolova OS, Studitsky VM.

Proc Natl Acad Sci U S A. 2015 Oct 27;112(43):E5787-95. doi: 10.1073/pnas.1508371112. Epub 2015 Oct 12.

10.

[Molecular mechanisms of regulaion of transcription by PARP1].

Maliuchenko NV, Kulaeva OI, Kotova E, Chupyrkina AA, Nikitin DV, Kirpichnikov MP, Studitskiĭ VM.

Mol Biol (Mosk). 2015 Jan-Feb;49(1):99-113. Review. Russian.

11.

Preparation of mononucleosomal templates for analysis of transcription with RNA polymerase using spFRET.

Kudryashova KS, Chertkov OV, Nikitin DV, Pestov NA, Kulaeva OI, Efremenko AV, Solonin AS, Kirpichnikov MP, Studitsky VM, Feofanov AV.

Methods Mol Biol. 2015;1288:395-412. doi: 10.1007/978-1-4939-2474-5_23.

12.

Preparation and analysis of positioned mononucleosomes.

Kulaeva OI, Studitsky VM.

Methods Mol Biol. 2015;1288:15-26. doi: 10.1007/978-1-4939-2474-5_2.

13.

Experimental analysis of hFACT action during Pol II transcription in vitro.

Hsieh FK, Kulaeva OI, Studitsky VM.

Methods Mol Biol. 2015;1276:315-26. doi: 10.1007/978-1-4939-2392-2_19.

14.

Nucleosome positioning and composition modulate in silico chromatin flexibility.

Clauvelin N, Lo P, Kulaeva OI, Nizovtseva EV, Diaz-Montes J, Zola J, Parashar M, Studitsky VM, Olson WK.

J Phys Condens Matter. 2015 Feb 18;27(6):064112. doi: 10.1088/0953-8984/27/6/064112. Epub 2015 Jan 7.

15.

Analysis of the mechanism of nucleosome survival during transcription.

Chang HW, Kulaeva OI, Shaytan AK, Kibanov M, Kuznedelov K, Severinov KV, Kirpichnikov MP, Clark DJ, Studitsky VM.

Nucleic Acids Res. 2014 Feb;42(3):1619-27. doi: 10.1093/nar/gkt1120. Epub 2013 Nov 13.

16.

[Molecular mechanisms of transcription through a nuclesome by RNA polymerase II].

Kulaeva OI, Maliuchenko NV, Nikitin DV, Demidenko AV, Chertkov OV, Efimova NS, Kirpichnikov MP, Studitskiĭ VM.

Mol Biol (Mosk). 2013 Sep-Oct;47(5):754-66. Review. Russian.

17.

Histone chaperone FACT action during transcription through chromatin by RNA polymerase II.

Hsieh FK, Kulaeva OI, Patel SS, Dyer PN, Luger K, Reinberg D, Studitsky VM.

Proc Natl Acad Sci U S A. 2013 May 7;110(19):7654-9. doi: 10.1073/pnas.1222198110. Epub 2013 Apr 22.

18.

Structural Analysis of the Key Intermediate Formed during Transcription through a Nucleosome.

Chang HW, Shaytan AK, Hsieh FK, Kulaeva OI, Kirpichnikov MP, Studitsky VM.

Trends Cell Mol Biol. 2013;8:13-23.

19.

Distant activation of transcription: mechanisms of enhancer action.

Kulaeva OI, Nizovtseva EV, Polikanov YS, Ulianov SV, Studitsky VM.

Mol Cell Biol. 2012 Dec;32(24):4892-7. doi: 10.1128/MCB.01127-12. Epub 2012 Oct 8. Review.

20.

Mechanism of transcription through a nucleosome by RNA polymerase II.

Kulaeva OI, Hsieh FK, Chang HW, Luse DS, Studitsky VM.

Biochim Biophys Acta. 2013 Jan;1829(1):76-83. doi: 10.1016/j.bbagrm.2012.08.015. Epub 2012 Sep 6. Review.

21.

Experimental analysis of the mechanism of chromatin remodeling by RNA polymerase II.

Gaykalova DA, Kulaeva OI, Pestov NA, Hsieh FK, Studitsky VM.

Methods Enzymol. 2012;512:293-314. doi: 10.1016/B978-0-12-391940-3.00013-5.

22.

Internucleosomal interactions mediated by histone tails allow distant communication in chromatin.

Kulaeva OI, Zheng G, Polikanov YS, Colasanti AV, Clauvelin N, Mukhopadhyay S, Sengupta AM, Studitsky VM, Olson WK.

J Biol Chem. 2012 Jun 8;287(24):20248-57. doi: 10.1074/jbc.M111.333104. Epub 2012 Apr 19.

23.

FACT in Cell Differentiation and Carcinogenesis.

Hsieh FK, Kulaeva OI, Orlovsky IV, Studitsky VM.

Oncotarget. 2011 Nov;2(11):830-2. No abstract available.

24.

Mechanism of histone survival during transcription by RNA polymerase II.

Kulaeva OI, Studitsky VM.

Transcription. 2010 Sep-Oct;1(2):85-8. doi: 10.4161/trns.1.2.12519.

25.

RNA polymerase complexes cooperate to relieve the nucleosomal barrier and evict histones.

Kulaeva OI, Hsieh FK, Studitsky VM.

Proc Natl Acad Sci U S A. 2010 Jun 22;107(25):11325-30. doi: 10.1073/pnas.1001148107. Epub 2010 Jun 7.

26.

Mechanism of chromatin remodeling and recovery during passage of RNA polymerase II.

Kulaeva OI, Gaykalova DA, Pestov NA, Golovastov VV, Vassylyev DG, Artsimovitch I, Studitsky VM.

Nat Struct Mol Biol. 2009 Dec;16(12):1272-8. doi: 10.1038/nsmb.1689. Epub 2009 Nov 22.

27.

Preparation and analysis of uniquely positioned mononucleosomes.

Gaykalova DA, Kulaeva OI, Bondarenko VA, Studitsky VM.

Methods Mol Biol. 2009;523:109-23. doi: 10.1007/978-1-59745-190-1_8.

28.

Interferon regulatory factors IRF5 and IRF7 inhibit growth and induce senescence in immortal Li-Fraumeni fibroblasts.

Li Q, Tang L, Roberts PC, Kraniak JM, Fridman AL, Kulaeva OI, Tehrani OS, Tainsky MA.

Mol Cancer Res. 2008 May;6(5):770-84. doi: 10.1158/1541-7786.MCR-07-0114.

29.

Transcription through chromatin by RNA polymerase II: histone displacement and exchange.

Kulaeva OI, Gaykalova DA, Studitsky VM.

Mutat Res. 2007 May 1;618(1-2):116-29. Epub 2007 Jan 21. Review.

30.

Nucleosomes can form a polar barrier to transcript elongation by RNA polymerase II.

Bondarenko VA, Steele LM, Ujvári A, Gaykalova DA, Kulaeva OI, Polikanov YS, Luse DS, Studitsky VM.

Mol Cell. 2006 Nov 3;24(3):469-79.

31.

Expression profiling identifies three pathways altered in cellular immortalization: interferon, cell cycle, and cytoskeleton.

Fridman AL, Tang L, Kulaeva OI, Ye B, Li Q, Nahhas F, Roberts PC, Land SJ, Abrams J, Tainsky MA.

J Gerontol A Biol Sci Med Sci. 2006 Sep;61(9):879-89.

PMID:
16960018
32.

Topological analysis of plasmid chromatin from yeast and mammalian cells.

Tong W, Kulaeva OI, Clark DJ, Lutter LC.

J Mol Biol. 2006 Sep 1;361(5):813-22. Epub 2006 Jul 15.

PMID:
16890953
33.

De novo ceramide accumulation due to inhibition of its conversion to complex sphingolipids in apoptotic photosensitized cells.

Dolgachev V, Farooqui MS, Kulaeva OI, Tainsky MA, Nagy B, Hanada K, Separovic D.

J Biol Chem. 2004 May 28;279(22):23238-49. Epub 2004 Mar 12.

34.

Epigenetic silencing of multiple interferon pathway genes after cellular immortalization.

Kulaeva OI, Draghici S, Tang L, Kraniak JM, Land SJ, Tainsky MA.

Oncogene. 2003 Jun 26;22(26):4118-27.

PMID:
12821946
35.

Functional mapping of Bas2. Identification of activation and Bas1-interaction domains.

Hannum C, Kulaeva OI, Sun H, Urbanowski JL, Wendus A, Stillman DJ, Rolfes RJ.

J Biol Chem. 2002 Sep 13;277(37):34003-9. Epub 2002 Jul 10.

36.

TATA box occupancy in the SV40 transcription elongation complex.

Kulaeva OI, Lutter LC.

Virology. 2001 Jun 20;285(1):119-27.

37.
38.

[Expression of ribosome inactivating protein gene under control of viral subgenomic promoter].

Kulaeva OI, Zelenina DA, Frolova OIu, Borisova OV, Skurat EV, Morozov SIu, Dorokhov IuL.

Dokl Akad Nauk. 1998 Jun;360(4):559-62. Russian. No abstract available.

PMID:
9702510
39.

Unusual insertion element polymorphisms in the promoter and terminator regions of the mucAB-like genes of R471a and R446b.

Kulaeva OI, Koonin EV, Wootton JC, Levine AS, Woodgate R.

Mutat Res. 1998 Feb 2;397(2):247-62.

PMID:
9541650
40.

Identification of a DinB/UmuC homolog in the archeon Sulfolobus solfataricus.

Kulaeva OI, Koonin EV, McDonald JP, Randall SK, Rabinovich N, Connaughton JF, Levine AS, Woodgate R.

Mutat Res. 1996 Oct 25;357(1-2):245-53.

PMID:
8876701
41.

Characterization of the umu-complementing operon from R391.

Kulaeva OI, Wootton JC, Levine AS, Woodgate R.

J Bacteriol. 1995 May;177(10):2737-43.

42.

Isolation and characterization of novel plasmid-encoded umuC mutants.

Woodgate R, Singh M, Kulaeva OI, Frank EG, Levine AS, Koch WH.

J Bacteriol. 1994 Aug;176(16):5011-21.

44.

Construction and expression of diphtheria toxin-encoding gene derivatives in Escherichia coli.

Zdanovsky AG, Kulaeva OI, Yankovsky NK.

Gene. 1992 Jul 1;116(1):81-6.

PMID:
1385795
45.

Translation enhancing properties of the 5'-leader of potato virus X genomic RNA.

Zelenina DA, Kulaeva OI, Smirnyagina EV, Solovyev AG, Miroshnichenko NA, Fedorkin ON, Rodionova NP, Morozov SYu, Atabekov JG.

FEBS Lett. 1992 Jan 27;296(3):267-70.

46.

[The 5'-terminal untranslated sequence of the genomic RNA in the potato X virus produces efficient enhancement of the translation of a foreign gene].

Smirniagina EV, Morozov SIu, Miroshnichenko NA, Solov'ev AG, Lukasheva LI, Kulaeva OI, Fedorkin ON, Rodionova NP, Atabekov IG.

Dokl Akad Nauk SSSR. 1990;314(4):979-80. Russian. No abstract available.

PMID:
2272279
47.

[Primary structure of RNA 3 of barley stripe mosaic virus and its variability].

Kozlov IuV, Afanas'ev BN, Rupasov VV, Golova IuB, Kulaeva OI, Dolia VV, Atabekov IG, Baev AA.

Mol Biol (Mosk). 1989 Jul-Aug;23(4):1080-90. Russian.

PMID:
2586501

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