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Items: 19

1.

The free energy landscape of the oncogene protein E7 of human papillomavirus type 16 reveals a complex interplay between ordered and disordered regions.

Kukic P, Lo Piccolo GM, Nogueira MO, Svergun DI, Vendruscolo M, Felli IC, Pierattelli R.

Sci Rep. 2019 Apr 9;9(1):5822. doi: 10.1038/s41598-019-41925-4.

2.

The RNF168 paralog RNF169 defines a new class of ubiquitylated histone reader involved in the response to DNA damage.

Kitevski-LeBlanc J, Fradet-Turcotte A, Kukic P, Wilson MD, Portella G, Yuwen T, Panier S, Duan S, Canny MD, van Ingen H, Arrowsmith CH, Rubinstein JL, Vendruscolo M, Durocher D, Kay LE.

Elife. 2017 Apr 13;6. pii: e23872. doi: 10.7554/eLife.23872.

3.

Structural Characterization of the Early Events in the Nucleation-Condensation Mechanism in a Protein Folding Process.

Kukic P, Pustovalova Y, Camilloni C, Gianni S, Korzhnev DM, Vendruscolo M.

J Am Chem Soc. 2017 May 24;139(20):6899-6910. doi: 10.1021/jacs.7b01540. Epub 2017 May 10.

PMID:
28401755
4.

MOAG-4 promotes the aggregation of α-synuclein by competing with self-protective electrostatic interactions.

Yoshimura Y, Holmberg MA, Kukic P, Andersen CB, Mata-Cabana A, Falsone SF, Vendruscolo M, Nollen EAA, Mulder FAA.

J Biol Chem. 2017 May 19;292(20):8269-8278. doi: 10.1074/jbc.M116.764886. Epub 2017 Mar 23.

5.

Simultaneous quantification of protein order and disorder.

Sormanni P, Piovesan D, Heller GT, Bonomi M, Kukic P, Camilloni C, Fuxreiter M, Dosztanyi Z, Pappu RV, Babu MM, Longhi S, Tompa P, Dunker AK, Uversky VN, Tosatto SC, Vendruscolo M.

Nat Chem Biol. 2017 Mar 22;13(4):339-342. doi: 10.1038/nchembio.2331. No abstract available.

PMID:
28328918
6.

Investigation of Ionization Pattern of the Adjacent Acidic Residues in the DXDXE Motif of GH-18 Chitinases Using Theoretical pKa Calculations.

Meekrathok P, Kukic P, Nielsen JE, Suginta W.

J Chem Inf Model. 2017 Mar 27;57(3):572-583. doi: 10.1021/acs.jcim.6b00536. Epub 2017 Mar 8.

PMID:
28230366
7.
8.

Structural characterization of the interaction of α-synuclein nascent chains with the ribosomal surface and trigger factor.

Deckert A, Waudby CA, Wlodarski T, Wentink AS, Wang X, Kirkpatrick JP, Paton JF, Camilloni C, Kukic P, Dobson CM, Vendruscolo M, Cabrita LD, Christodoulou J.

Proc Natl Acad Sci U S A. 2016 May 3;113(18):5012-7. doi: 10.1073/pnas.1519124113. Epub 2016 Apr 18.

9.

Structural Insights into the Calcium-Mediated Allosteric Transition in the C-Terminal Domain of Calmodulin from Nuclear Magnetic Resonance Measurements.

Kukic P, Lundström P, Camilloni C, Evenäs J, Akke M, Vendruscolo M.

Biochemistry. 2016 Jan 12;55(1):19-28. doi: 10.1021/acs.biochem.5b00961. Epub 2015 Dec 30.

PMID:
26618792
10.

Mapping the Protein Fold Universe Using the CamTube Force Field in Molecular Dynamics Simulations.

Kukic P, Kannan A, Dijkstra MJ, Abeln S, Camilloni C, Vendruscolo M.

PLoS Comput Biol. 2015 Oct 27;11(10):e1004435. doi: 10.1371/journal.pcbi.1004435. eCollection 2015 Oct.

11.

Probing the Residual Structure of the Low Populated Denatured State of ADA2h under Folding Conditions by Relaxation Dispersion Nuclear Magnetic Resonance Spectroscopy.

Pustovalova Y, Kukic P, Vendruscolo M, Korzhnev DM.

Biochemistry. 2015 Aug 4;54(30):4611-22. doi: 10.1021/acs.biochem.5b00345. Epub 2015 Jul 21.

PMID:
26115097
12.

A Phosphorylation-Induced Turn Defines the Alzheimer's Disease AT8 Antibody Epitope on the Tau Protein.

Gandhi NS, Landrieu I, Byrne C, Kukic P, Amniai L, Cantrelle FX, Wieruszeski JM, Mancera RL, Jacquot Y, Lippens G.

Angew Chem Int Ed Engl. 2015 Jun 1;54(23):6819-23. doi: 10.1002/anie.201501898. Epub 2015 Apr 16.

PMID:
25881502
13.

Structure and dynamics of the integrin LFA-1 I-domain in the inactive state underlie its inside-out/outside-in signaling and allosteric mechanisms.

Kukic P, Alvin Leung HT, Bemporad F, Aprile FA, Kumita JR, De Simone A, Camilloni C, Vendruscolo M.

Structure. 2015 Apr 7;23(4):745-53. doi: 10.1016/j.str.2014.12.020. Epub 2015 Mar 12.

14.

NMR characterization of the conformational fluctuations of the human lymphocyte function-associated antigen-1 I-domain.

Leung HT, Kukic P, Camilloni C, Bemporad F, De Simone A, Aprile FA, Kumita JR, Vendruscolo M.

Protein Sci. 2014 Nov;23(11):1596-606. doi: 10.1002/pro.2538. Epub 2014 Sep 5.

15.

Determination of the individual roles of the linker residues in the interdomain motions of calmodulin using NMR chemical shifts.

Kukic P, Camilloni C, Cavalli A, Vendruscolo M.

J Mol Biol. 2014 Apr 17;426(8):1826-38. doi: 10.1016/j.jmb.2014.02.002. Epub 2014 Feb 12.

PMID:
24530797
16.

Toward an accurate prediction of inter-residue distances in proteins using 2D recursive neural networks.

Kukic P, Mirabello C, Tradigo G, Walsh I, Veltri P, Pollastri G.

BMC Bioinformatics. 2014 Jan 10;15:6. doi: 10.1186/1471-2105-15-6.

17.

Protein dielectric constants determined from NMR chemical shift perturbations.

Kukic P, Farrell D, McIntosh LP, García-Moreno E B, Jensen KS, Toleikis Z, Teilum K, Nielsen JE.

J Am Chem Soc. 2013 Nov 13;135(45):16968-76. doi: 10.1021/ja406995j. Epub 2013 Oct 31.

18.

Electrostatics in proteins and protein-ligand complexes.

Kukić P, Nielsen JE.

Future Med Chem. 2010 Apr;2(4):647-66. doi: 10.4155/fmc.10.6. Review.

PMID:
21426012
19.

Improving the analysis of NMR spectra tracking pH-induced conformational changes: removing artefacts of the electric field on the NMR chemical shift.

Kukić P, Farrell D, Søndergaard CR, Bjarnadottir U, Bradley J, Pollastri G, Nielsen JE.

Proteins. 2010 Mar;78(4):971-84. doi: 10.1002/prot.22621.

PMID:
19894279

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