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Items: 49

1.

Reservoirs of resistance: polymyxin resistance in veterinary-associated companion animal isolates of Pseudomonas aeruginosa.

Scott A, Pottenger S, Timofte D, Moore M, Wright L, Kukavica-Ibrulj I, Jeukens J, Levesque RC, Freschi L, Pinchbeck GL, Schmidt VM, McEwan N, Radford AD, Fothergill JL.

Vet Rec. 2019 Aug 17;185(7):206. doi: 10.1136/vr.105075. Epub 2019 Jun 25.

PMID:
31239295
2.

The Pseudomonas aeruginosa Population among Cystic Fibrosis Patients in Quebec, Canada: a Disease Hot Spot without Known Epidemic Isolates.

Jeukens J, Freschi L, Kukavica-Ibrulj I, Emond-Rheault JG, Allard C, Barbeau J, Cantin A, Charette SJ, Déziel E, Malouin F, Milot J, Nguyen D, Popa C, Boyle B, Levesque RC.

J Clin Microbiol. 2019 May 24;57(6). pii: e02019-18. doi: 10.1128/JCM.02019-18. Print 2019 Jun. No abstract available.

PMID:
30944192
3.

Major Release of 161 Whole-Genome Sequences from the International Pseudomonas Consortium Database.

Jeukens J, Emond-Rheault JG, Freschi L, Kukavica-Ibrulj I, Levesque RC.

Microbiol Resour Announc. 2019 Mar 28;8(13). pii: e00013-19. doi: 10.1128/MRA.00013-19.

4.

The Pseudomonas aeruginosa Pan-Genome Provides New Insights on Its Population Structure, Horizontal Gene Transfer, and Pathogenicity.

Freschi L, Vincent AT, Jeukens J, Emond-Rheault JG, Kukavica-Ibrulj I, Dupont MJ, Charette SJ, Boyle B, Levesque RC.

Genome Biol Evol. 2019 Jan 1;11(1):109-120. doi: 10.1093/gbe/evy259.

5.

Model-Based Drug Development in Pulmonary Delivery: Pharmacokinetic Analysis of Novel Drug Candidates for Treatment of Pseudomonas aeruginosa Lung Infection.

Sou T, Kukavica-Ibrulj I, Soukarieh F, Halliday N, Levesque RC, Williams P, Stocks M, Cámara M, Friberg LE, Bergström CAS.

J Pharm Sci. 2019 Jan;108(1):630-640. doi: 10.1016/j.xphs.2018.09.017. Epub 2018 Sep 23.

6.

Genomic characterisation of an international Pseudomonas aeruginosa reference panel indicates that the two major groups draw upon distinct mobile gene pools.

Freschi L, Bertelli C, Jeukens J, Moore MP, Kukavica-Ibrulj I, Emond-Rheault JG, Hamel J, Fothergill JL, Tucker NP, McClean S, Klockgether J, de Soyza A, Brinkman FSL, Levesque RC, Winstanley C.

FEMS Microbiol Lett. 2018 Jul 1;365(14). doi: 10.1093/femsle/fny120.

PMID:
29897457
7.

Salmonella enterica Prophage Sequence Profiles Reflect Genome Diversity and Can Be Used for High Discrimination Subtyping.

Mottawea W, Duceppe MO, Dupras AA, Usongo V, Jeukens J, Freschi L, Emond-Rheault JG, Hamel J, Kukavica-Ibrulj I, Boyle B, Gill A, Burnett E, Franz E, Arya G, Weadge JT, Gruenheid S, Wiedmann M, Huang H, Daigle F, Moineau S, Bekal S, Levesque RC, Goodridge LD, Ogunremi D.

Front Microbiol. 2018 May 4;9:836. doi: 10.3389/fmicb.2018.00836. eCollection 2018.

8.

A multi-host approach to identify a transposon mutant of Pseudomonas aeruginosa LESB58 lacking full virulence.

Gagné-Thivierge C, Kukavica-Ibrulj I, Filion G, Dekimpe V, Tan SGE, Vincent AT, Déziel É, Levesque RC, Charette SJ.

BMC Res Notes. 2018 Mar 27;11(1):198. doi: 10.1186/s13104-018-3308-7.

9.

Whole-Genome Sequencing of Lactobacillus Species from Two Commercial Probiotic Products.

Colavecchio A, Leo V, Zaccheo S, Jeukens J, Emond-Rheault JG, Hamel J, Kukavica-Ibrulj I, Levesque RC, Goodridge L.

Genome Announc. 2017 Nov 9;5(45). pii: e01279-17. doi: 10.1128/genomeA.01279-17.

10.

Genomic characterisation of environmental Pseudomonas aeruginosa isolated from dental unit waterlines revealed the insertion sequence ISPa11 as a chaotropic element.

Vincent AT, Freschi L, Jeukens J, Kukavica-Ibrulj I, Emond-Rheault JG, Leduc A, Boyle B, Jean-Pierre F, Groleau MC, Déziel E, Barbeau J, Charette SJ, Levesque RC.

FEMS Microbiol Ecol. 2017 Sep 1;93(9). doi: 10.1093/femsec/fix106.

PMID:
28934400
11.

Comparative genomics of a drug-resistant Pseudomonas aeruginosa panel and the challenges of antimicrobial resistance prediction from genomes.

Jeukens J, Kukavica-Ibrulj I, Emond-Rheault JG, Freschi L, Levesque RC.

FEMS Microbiol Lett. 2017 Oct 2;364(18). doi: 10.1093/femsle/fnx161.

PMID:
28922838
12.

Prophage Integrase Typing Is a Useful Indicator of Genomic Diversity in Salmonella enterica.

Colavecchio A, D'Souza Y, Tompkins E, Jeukens J, Freschi L, Emond-Rheault JG, Kukavica-Ibrulj I, Boyle B, Bekal S, Tamber S, Levesque RC, Goodridge LD.

Front Microbiol. 2017 Jul 10;8:1283. doi: 10.3389/fmicb.2017.01283. eCollection 2017.

13.

A Syst-OMICS Approach to Ensuring Food Safety and Reducing the Economic Burden of Salmonellosis.

Emond-Rheault JG, Jeukens J, Freschi L, Kukavica-Ibrulj I, Boyle B, Dupont MJ, Colavecchio A, Barrere V, Cadieux B, Arya G, Bekal S, Berry C, Burnett E, Cavestri C, Chapin TK, Crouse A, Daigle F, Danyluk MD, Delaquis P, Dewar K, Doualla-Bell F, Fliss I, Fong K, Fournier E, Franz E, Garduno R, Gill A, Gruenheid S, Harris L, Huang CB, Huang H, Johnson R, Joly Y, Kerhoas M, Kong N, Lapointe G, Larivière L, Loignon S, Malo D, Moineau S, Mottawea W, Mukhopadhyay K, Nadon C, Nash J, Ngueng Feze I, Ogunremi D, Perets A, Pilar AV, Reimer AR, Robertson J, Rohde J, Sanderson KE, Song L, Stephan R, Tamber S, Thomassin P, Tremblay D, Usongo V, Vincent C, Wang S, Weadge JT, Wiedmann M, Wijnands L, Wilson ED, Wittum T, Yoshida C, Youfsi K, Zhu L, Weimer BC, Goodridge L, Levesque RC.

Front Microbiol. 2017 Jun 2;8:996. doi: 10.3389/fmicb.2017.00996. eCollection 2017.

14.

Genomics of antibiotic-resistance prediction in Pseudomonas aeruginosa.

Jeukens J, Freschi L, Kukavica-Ibrulj I, Emond-Rheault JG, Tucker NP, Levesque RC.

Ann N Y Acad Sci. 2019 Jan;1435(1):5-17. doi: 10.1111/nyas.13358. Epub 2017 Jun 2. Review.

15.

AnCo3, a New Member of the Emerging Family of Phage-Like Plasmids.

Colavecchio A, Jeukens J, Freschi L, Edmond Rheault JG, Kukavica-Ibrulj I, Levesque R, Goodridge L.

Genome Announc. 2017 May 11;5(19). pii: e00110-17. doi: 10.1128/genomeA.00110-17.

16.

Complete Genome Sequences of Two Phage-Like Plasmids Carrying the CTX-M-15 Extended-Spectrum β-Lactamase Gene.

Colavecchio A, Jeukens J, Freschi L, Edmond Rheault JG, Kukavica-Ibrulj I, Levesque RC, LeJeune J, Goodridge L.

Genome Announc. 2017 May 11;5(19). pii: e00102-17. doi: 10.1128/genomeA.00102-17.

17.

A pan-genomic approach to understand the basis of host adaptation in Achromobacter.

Jeukens J, Freschi L, Vincent AT, Emond-Rheault JG, Kukavica-Ibrulj I, Charette SJ, Levesque RC.

Genome Biol Evol. 2017 Apr 5. doi: 10.1093/gbe/evx061. [Epub ahead of print]

18.

Temperate phages enhance pathogen fitness in chronic lung infection.

Davies EV, James CE, Kukavica-Ibrulj I, Levesque RC, Brockhurst MA, Winstanley C.

ISME J. 2016 Oct;10(10):2553-5. doi: 10.1038/ismej.2016.51. Epub 2016 Apr 12.

19.

Molybdate transporter ModABC is important for Pseudomonas aeruginosa chronic lung infection.

Périnet S, Jeukens J, Kukavica-Ibrulj I, Ouellet MM, Charette SJ, Levesque RC.

BMC Res Notes. 2016 Jan 12;9:23. doi: 10.1186/s13104-016-1840-x.

20.

Comparative genomics and biological characterization of sequential Pseudomonas aeruginosa isolates from persistent airways infection.

Bianconi I, Jeukens J, Freschi L, Alcalá-Franco B, Facchini M, Boyle B, Molinaro A, Kukavica-Ibrulj I, Tümmler B, Levesque RC, Bragonzi A.

BMC Genomics. 2015 Dec 29;16:1105. doi: 10.1186/s12864-015-2276-8.

21.

Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium.

Freschi L, Jeukens J, Kukavica-Ibrulj I, Boyle B, Dupont MJ, Laroche J, Larose S, Maaroufi H, Fothergill JL, Moore M, Winsor GL, Aaron SD, Barbeau J, Bell SC, Burns JL, Camara M, Cantin A, Charette SJ, Dewar K, Déziel É, Grimwood K, Hancock RE, Harrison JJ, Heeb S, Jelsbak L, Jia B, Kenna DT, Kidd TJ, Klockgether J, Lam JS, Lamont IL, Lewenza S, Loman N, Malouin F, Manos J, McArthur AG, McKeown J, Milot J, Naghra H, Nguyen D, Pereira SK, Perron GG, Pirnay JP, Rainey PB, Rousseau S, Santos PM, Stephenson A, Taylor V, Turton JF, Waglechner N, Williams P, Thrane SW, Wright GD, Brinkman FS, Tucker NP, Tümmler B, Winstanley C, Levesque RC.

Front Microbiol. 2015 Sep 29;6:1036. doi: 10.3389/fmicb.2015.01036. eCollection 2015.

22.

Draft Genome Sequences of Two Lipopeptide-Producing Strains of Bacillus methylotrophicus.

Jeukens J, Kukavica-Ibrulj I, Freschi L, Jabaji S, Levesque RC.

Genome Announc. 2015 Oct 8;3(5). pii: e01176-15. doi: 10.1128/genomeA.01176-15.

23.

The Widespread Multidrug-Resistant Serotype O12 Pseudomonas aeruginosa Clone Emerged through Concomitant Horizontal Transfer of Serotype Antigen and Antibiotic Resistance Gene Clusters.

Thrane SW, Taylor VL, Freschi L, Kukavica-Ibrulj I, Boyle B, Laroche J, Pirnay JP, Lévesque RC, Lam JS, Jelsbak L.

MBio. 2015 Sep 22;6(5):e01396-15. doi: 10.1128/mBio.01396-15.

24.

Genes Required for Free Phage Production are Essential for Pseudomonas aeruginosa Chronic Lung Infections.

Lemieux AA, Jeukens J, Kukavica-Ibrulj I, Fothergill JL, Boyle B, Laroche J, Tucker NP, Winstanley C, Levesque RC.

J Infect Dis. 2016 Feb 1;213(3):395-402. doi: 10.1093/infdis/jiv415. Epub 2015 Aug 12.

25.

Draft Genome Sequence of Triclosan-Resistant Cystic Fibrosis Isolate Achromobacter xylosoxidans CF304.

Jeukens J, Freschi L, Kukavica-Ibrulj I, Nguyen D, Levesque RC.

Genome Announc. 2015 Jul 30;3(4). pii: e00865-15. doi: 10.1128/genomeA.00865-15.

26.

Essential genes in the infection model of Pseudomonas aeruginosa-PCR-based signature-tagged mutagenesis.

Kukavica-Ibrulj I, Levesque RC.

Methods Mol Biol. 2015;1279:97-123. doi: 10.1007/978-1-4939-2398-4_7.

PMID:
25636615
27.

Assessing Pseudomonas aeruginosa virulence and the host response using murine models of acute and chronic lung infection.

Kukavica-Ibrulj I, Facchini M, Cigana C, Levesque RC, Bragonzi A.

Methods Mol Biol. 2014;1149:757-71. doi: 10.1007/978-1-4939-0473-0_58.

PMID:
24818948
28.

Signature-tagged mutagenesis.

Kukavica-Ibrulj I, Levesque RC.

Methods Mol Biol. 2014;1149:541-54. doi: 10.1007/978-1-4939-0473-0_41.

PMID:
24818931
29.

Comparative genomics of isolates of a Pseudomonas aeruginosa epidemic strain associated with chronic lung infections of cystic fibrosis patients.

Jeukens J, Boyle B, Kukavica-Ibrulj I, Ouellet MM, Aaron SD, Charette SJ, Fothergill JL, Tucker NP, Winstanley C, Levesque RC.

PLoS One. 2014 Feb 5;9(2):e87611. doi: 10.1371/journal.pone.0087611. eCollection 2014.

30.

Requirement of the Pseudomonas aeruginosa CbrA sensor kinase for full virulence in a murine acute lung infection model.

Yeung AT, Janot L, Pena OM, Neidig A, Kukavica-Ibrulj I, Hilchie A, Levesque RC, Overhage J, Hancock RE.

Infect Immun. 2014 Mar;82(3):1256-67. doi: 10.1128/IAI.01527-13. Epub 2013 Dec 30.

31.

Draft genomes of 12 host-adapted and environmental isolates of Pseudomonas aeruginosa and their positions in the core genome phylogeny.

Stewart L, Ford A, Sangal V, Jeukens J, Boyle B, Kukavica-Ibrulj I, Caim S, Crossman L, Hoskisson PA, Levesque R, Tucker NP.

Pathog Dis. 2014 Jun;71(1):20-5. doi: 10.1111/2049-632X.12107. Epub 2013 Dec 16.

PMID:
24167005
32.

Complete Genome Sequence of Persistent Cystic Fibrosis Isolate Pseudomonas aeruginosa Strain RP73.

Jeukens J, Boyle B, Bianconi I, Kukavica-Ibrulj I, Tümmler B, Bragonzi A, Levesque RC.

Genome Announc. 2013 Aug 1;1(4). pii: e00568-13. doi: 10.1128/genomeA.00568-13.

33.

The Lon protease is essential for full virulence in Pseudomonas aeruginosa.

Breidenstein EB, Janot L, Strehmel J, Fernandez L, Taylor PK, Kukavica-Ibrulj I, Gellatly SL, Levesque RC, Overhage J, Hancock RE.

PLoS One. 2012;7(11):e49123. doi: 10.1371/journal.pone.0049123. Epub 2012 Nov 7.

34.

Complete genome sequences of three Pseudomonas aeruginosa isolates with phenotypes of polymyxin B adaptation and inducible resistance.

Boyle B, Fernandez L, Laroche J, Kukavica-Ibrulj I, Mendes CM, Hancock RW, Levesque RC.

J Bacteriol. 2012 Jan;194(2):529-30. doi: 10.1128/JB.06246-11.

35.

BAC library construction, screening and clone sequencing of lake whitefish (Coregonus clupeaformis, Salmonidae) towards the elucidation of adaptive species divergence.

Jeukens J, Boyle B, Kukavica-Ibrulj I, St-Cyr J, Lévesque RC, Bernatchez L.

Mol Ecol Resour. 2011 May;11(3):541-9. doi: 10.1111/j.1755-0998.2011.02982.x. Epub 2011 Jan 27.

PMID:
21481212
36.

Characterization of alanine catabolism in Pseudomonas aeruginosa and its importance for proliferation in vivo.

Boulette ML, Baynham PJ, Jorth PA, Kukavica-Ibrulj I, Longoria A, Barrera K, Levesque RC, Whiteley M.

J Bacteriol. 2009 Oct;191(20):6329-34. doi: 10.1128/JB.00817-09. Epub 2009 Aug 7.

37.

Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa.

Winstanley C, Langille MG, Fothergill JL, Kukavica-Ibrulj I, Paradis-Bleau C, Sanschagrin F, Thomson NR, Winsor GL, Quail MA, Lennard N, Bignell A, Clarke L, Seeger K, Saunders D, Harris D, Parkhill J, Hancock RE, Brinkman FS, Levesque RC.

Genome Res. 2009 Jan;19(1):12-23. doi: 10.1101/gr.086082.108. Epub 2008 Dec 1.

38.

Infection with human metapneumovirus predisposes mice to severe pneumococcal pneumonia.

Kukavica-Ibrulj I, Hamelin ME, Prince GA, Gagnon C, Bergeron Y, Bergeron MG, Boivin G.

J Virol. 2009 Feb;83(3):1341-9. doi: 10.1128/JVI.01123-08. Epub 2008 Nov 19.

39.

Detection of human metapneumovirus antigens in nasopharyngeal aspirates using an enzyme immunoassay.

Kukavica-Ibrulj I, Boivin G.

J Clin Virol. 2009 Jan;44(1):88-90. doi: 10.1016/j.jcv.2008.09.011. Epub 2008 Nov 17.

PMID:
19010729
40.

Animal models of chronic lung infection with Pseudomonas aeruginosa: useful tools for cystic fibrosis studies.

Kukavica-Ibrulj I, Levesque RC.

Lab Anim. 2008 Oct;42(4):389-412. doi: 10.1258/la.2007.06014e. Epub 2008 Sep 9. Review.

PMID:
18782827
41.

Functional genomics of PycR, a LysR family transcriptional regulator essential for maintenance of Pseudomonas aeruginosa in the rat lung.

Kukavica-Ibrulj I, Sanschagrin F, Peterson A, Whiteley M, Boyle B, Mackay J, Levesque RC.

Microbiology. 2008 Jul;154(Pt 7):2106-18. doi: 10.1099/mic.0.2007/011239-0.

PMID:
18599838
42.

Essential genes in the infection model of Pseudomonas aeruginosa PCR-based signature-tagged mutagenesis.

Sanschagrin F, Kukavica-Ibrulj I, Levesque RC.

Methods Mol Biol. 2008;416:61-82. doi: 10.1007/978-1-59745-321-9_5.

PMID:
18392961
43.

Proteomic, microarray, and signature-tagged mutagenesis analyses of anaerobic Pseudomonas aeruginosa at pH 6.5, likely representing chronic, late-stage cystic fibrosis airway conditions.

Platt MD, Schurr MJ, Sauer K, Vazquez G, Kukavica-Ibrulj I, Potvin E, Levesque RC, Fedynak A, Brinkman FS, Schurr J, Hwang SH, Lau GW, Limbach PA, Rowe JJ, Lieberman MA, Barraud N, Webb J, Kjelleberg S, Hunt DF, Hassett DJ.

J Bacteriol. 2008 Apr;190(8):2739-58. doi: 10.1128/JB.01683-07. Epub 2008 Jan 18.

44.

In vivo growth of Pseudomonas aeruginosa strains PAO1 and PA14 and the hypervirulent strain LESB58 in a rat model of chronic lung infection.

Kukavica-Ibrulj I, Bragonzi A, Paroni M, Winstanley C, Sanschagrin F, O'Toole GA, Levesque RC.

J Bacteriol. 2008 Apr;190(8):2804-13. Epub 2007 Dec 14.

45.

Hepatitis A virus attachment to agri-food surfaces using immunological, virological and thermodynamic assays.

Kukavica-Ibrulj I, Darveau A, Jean J, Fliss I.

J Appl Microbiol. 2004;97(5):923-34.

46.

Identification of novel pathogenicity genes by PCR signature-tagged mutagenesis and related technologies.

Lehoux DE, Sanschagrin F, Kukavica-Ibrulj I, Potvin E, Levesque RC.

Methods Mol Biol. 2004;266:289-304.

PMID:
15148424
47.

In vivo functional genomics of Pseudomonas aeruginosa for high-throughput screening of new virulence factors and antibacterial targets.

Potvin E, Lehoux DE, Kukavica-Ibrulj I, Richard KL, Sanschagrin F, Lau GW, Levesque RC.

Environ Microbiol. 2003 Dec;5(12):1294-308.

PMID:
14641575
48.
49.

Effectiveness of commercial disinfectants for inactivating hepatitis A virus on agri-food surfaces.

Jean J, Vachon JF, Moroni O, Darveau A, Kukavica-Ibrulj I, Fliss I.

J Food Prot. 2003 Jan;66(1):115-9.

PMID:
12540190

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