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Microdroplet screening and selection for improved microbial production of extracellular compounds.

van Tatenhove-Pel RJ, Hernandez-Valdes JA, Teusink B, Kuipers OP, Fischlechner M, Bachmann H.

Curr Opin Biotechnol. 2019 Nov 23;61:72-81. doi: 10.1016/j.copbio.2019.10.007. [Epub ahead of print] Review.


Construction and characterization of a double mutant of Enterococcus faecalis that does not produce biogenic amines.

Perez M, Calles-Enríquez M, Del Rio B, Redruello B, de Jong A, Kuipers OP, Kok J, Martin MC, Ladero V, Fernandez M, Alvarez MA.

Sci Rep. 2019 Nov 14;9(1):16881. doi: 10.1038/s41598-019-53175-5.


Design and Expression of Specific Hybrid Lantibiotics Active Against Pathogenic Clostridium spp.

Cebrián R, Macia-Valero A, Jati AP, Kuipers OP.

Front Microbiol. 2019 Sep 24;10:2154. doi: 10.3389/fmicb.2019.02154. eCollection 2019.


TprA/PhrA Quorum Sensing System Has a Major Effect on Pneumococcal Survival in Respiratory Tract and Blood, and Its Activity Is Controlled by CcpA and GlnR.

Motib AS, Al-Bayati FAY, Manzoor I, Shafeeq S, Kadam A, Kuipers OP, Hiller NL, Andrew PW, Yesilkaya H.

Front Cell Infect Microbiol. 2019 Sep 13;9:326. doi: 10.3389/fcimb.2019.00326. eCollection 2019.


Selective Modification of Ribosomally Synthesized and Post-Translationally Modified Peptides (RiPPs) through Diels-Alder Cycloadditions on Dehydroalanine Residues.

de Vries RH, Viel JH, Oudshoorn R, Kuipers OP, Roelfes G.

Chemistry. 2019 Oct 1;25(55):12698-12702. doi: 10.1002/chem.201902907. Epub 2019 Sep 9.


A Specific Sugar Moiety in the Lactococcus lactis Cell Wall Pellicle Is Required for Infection by CHPC971, a Member of the Rare 1706 Phage Species.

Marcelli B, de Jong A, Karsens H, Janzen T, Kok J, Kuipers OP.

Appl Environ Microbiol. 2019 Sep 17;85(19). pii: e01224-19. doi: 10.1128/AEM.01224-19. Print 2019 Oct 1.


Feasability of Introducing a Thioether Ring in Vasopressin by nisBTC Co-expression in Lactococcus lactis.

Li Q, Montalban-Lopez M, Kuipers OP.

Front Microbiol. 2019 Jul 2;10:1508. doi: 10.3389/fmicb.2019.01508. eCollection 2019.


Ampicillin-treated Lactococcus lactis MG1363 populations contain persisters as well as viable but non-culturable cells.

van Tatenhove-Pel RJ, Zwering E, Solopova A, Kuipers OP, Bachmann H.

Sci Rep. 2019 Jul 8;9(1):9867. doi: 10.1038/s41598-019-46344-z.


Engineering Lactococcus lactis for the production of unusual anthocyanins using tea as substrate.

Solopova A, van Tilburg AY, Foito A, Allwood JW, Stewart D, Kulakauskas S, Kuipers OP.

Metab Eng. 2019 Jul;54:160-169. doi: 10.1016/j.ymben.2019.04.002. Epub 2019 Apr 10.


Draft Genome Sequences of 10 Paenibacillus and Bacillus sp. Strains Isolated from Healthy Tomato Plants and Rhizosphere Soil.

Zhou L, Song C, de Jong A, Kuipers OP.

Microbiol Resour Announc. 2019 Mar 21;8(12). pii: e00055-19. doi: 10.1128/MRA.00055-19.


Analysis of modular bioengineered antimicrobial lanthipeptides at nanoliter scale.

Schmitt S, Montalbán-López M, Peterhoff D, Deng J, Wagner R, Held M, Kuipers OP, Panke S.

Nat Chem Biol. 2019 May;15(5):437-443. doi: 10.1038/s41589-019-0250-5. Epub 2019 Apr 1.


Heterologous biosynthesis and characterization of a glycocin from a thermophilic bacterium.

Kaunietis A, Buivydas A, Čitavičius DJ, Kuipers OP.

Nat Commun. 2019 Mar 7;10(1):1115. doi: 10.1038/s41467-019-09065-5.


Metabolic engineering and synthetic biology employing Lactococcus lactis and Bacillus subtilis cell factories.

van Tilburg AY, Cao H, van der Meulen SB, Solopova A, Kuipers OP.

Curr Opin Biotechnol. 2019 Oct;59:1-7. doi: 10.1016/j.copbio.2019.01.007. Epub 2019 Feb 18. Review.


Phosphosugar Stress in Bacillus subtilis: Intracellular Accumulation of Mannose 6-Phosphate Derepressed the glcR-phoC Operon from Repression by GlcR.

Morabbi Heravi K, Manzoor I, Watzlawick H, de Jong A, Kuipers OP, Altenbuchner J.

J Bacteriol. 2019 Apr 9;201(9). pii: e00732-18. doi: 10.1128/JB.00732-18. Print 2019 May 1.


Draft Genome Sequences of Six Bacillus Strains and One Brevibacillus Strain Isolated from the Rhizosphere of Perennial Ryegrass (Lolium perenne).

Li Z, Song C, de Jong A, Kuipers OP.

Microbiol Resour Announc. 2019 Jan 24;8(4). pii: e01586-18. doi: 10.1128/MRA.01586-18. eCollection 2019 Jan.


Adaption to glucose limitation is modulated by the pleotropic regulator CcpA, independent of selection pressure strength.

Price CE, Branco Dos Santos F, Hesseling A, Uusitalo JJ, Bachmann H, Benavente V, Goel A, Berkhout J, Bruggeman FJ, Marrink SJ, Montalban-Lopez M, de Jong A, Kok J, Molenaar D, Poolman B, Teusink B, Kuipers OP.

BMC Evol Biol. 2019 Jan 10;19(1):15. doi: 10.1186/s12862-018-1331-x.


Renaissance of traditional DNA transfer strategies for improvement of industrial lactic acid bacteria.

Bron PA, Marcelli B, Mulder J, van der Els S, Morawska LP, Kuipers OP, Kok J, Kleerebezem M.

Curr Opin Biotechnol. 2019 Apr;56:61-68. doi: 10.1016/j.copbio.2018.09.004. Epub 2018 Oct 11. Review.


Further Elucidation of Galactose Utilization in Lactococcus lactis MG1363.

Solopova A, Bachmann H, Teusink B, Kok J, Kuipers OP.

Front Microbiol. 2018 Aug 3;9:1803. doi: 10.3389/fmicb.2018.01803. eCollection 2018.


Boosting heterologous protein production yield by adjusting global nitrogen and carbon metabolic regulatory networks in Bacillus subtilis.

Cao H, Villatoro-Hernandez J, Weme RDO, Frenzel E, Kuipers OP.

Metab Eng. 2018 Sep;49:143-152. doi: 10.1016/j.ymben.2018.08.001. Epub 2018 Aug 8.


Exploring plant-microbe interactions of the rhizobacteria Bacillus subtilis and Bacillus mycoides by use of the CRISPR-Cas9 system.

Yi Y, Li Z, Song C, Kuipers OP.

Environ Microbiol. 2018 Dec;20(12):4245-4260. doi: 10.1111/1462-2920.14305. Epub 2018 Aug 26.


Plant-Microbe Interaction: Transcriptional Response of Bacillus Mycoides to Potato Root Exudates.

Yi Y, Li Z, Kuipers OP.

J Vis Exp. 2018 Jul 2;(137). doi: 10.3791/57606.


NADH-Mediated Gene Expression in Streptococcus pneumoniae and Role of Rex as a Transcriptional Repressor of the Rex-Regulon.

Afzal M, Shafeeq S, Kuipers OP.

Front Microbiol. 2018 Jun 19;9:1300. doi: 10.3389/fmicb.2018.01300. eCollection 2018.


BAGEL4: a user-friendly web server to thoroughly mine RiPPs and bacteriocins.

van Heel AJ, de Jong A, Song C, Viel JH, Kok J, Kuipers OP.

Nucleic Acids Res. 2018 Jul 2;46(W1):W278-W281. doi: 10.1093/nar/gky383.


Antimicrobial Peptides Produced by Selective Pressure Incorporation of Non-canonical Amino Acids.

Nickling JH, Baumann T, Schmitt FJ, Bartholomae M, Kuipers OP, Friedrich T, Budisa N.

J Vis Exp. 2018 May 4;(135). doi: 10.3791/57551.


Heterologous signal peptides-directing secretion of Streptomyces mobaraensis transglutaminase by Bacillus subtilis.

Mu D, Lu J, Qiao M, Kuipers OP, Zhu J, Li X, Yang P, Zhao Y, Luo S, Wu X, Jiang S, Zheng Z.

Appl Microbiol Biotechnol. 2018 Jul;102(13):5533-5543. doi: 10.1007/s00253-018-9000-y. Epub 2018 Apr 25.


Rgg-Shp regulators are important for pneumococcal colonization and invasion through their effect on mannose utilization and capsule synthesis.

Zhi X, Abdullah IT, Gazioglu O, Manzoor I, Shafeeq S, Kuipers OP, Hiller NL, Andrew PW, Yesilkaya H.

Sci Rep. 2018 Apr 23;8(1):6369. doi: 10.1038/s41598-018-24910-1.


Expanding the Genetic Code of Lactococcus lactis and Escherichia coli to Incorporate Non-canonical Amino Acids for Production of Modified Lantibiotics.

Bartholomae M, Baumann T, Nickling JH, Peterhoff D, Wagner R, Budisa N, Kuipers OP.

Front Microbiol. 2018 Apr 6;9:657. doi: 10.3389/fmicb.2018.00657. eCollection 2018.


Co-expression of Nisin Z and Leucocin C as a Basis for Effective Protection Against Listeria monocytogenes in Pasteurized Milk.

Fu Y, Mu D, Qiao W, Zhu D, Wang X, Liu F, Xu H, Saris P, Kuipers OP, Qiao M.

Front Microbiol. 2018 Mar 23;9:547. doi: 10.3389/fmicb.2018.00547. eCollection 2018.


Increasing the Antimicrobial Activity of Nisin-Based Lantibiotics against Gram-Negative Pathogens.

Li Q, Montalban-Lopez M, Kuipers OP.

Appl Environ Microbiol. 2018 May 31;84(12). pii: e00052-18. doi: 10.1128/AEM.00052-18. Print 2018 Jun 15.


Interplay Between Capsule Expression and Uracil Metabolism in Streptococcus pneumoniae D39.

Carvalho SM, Kloosterman TG, Manzoor I, Caldas J, Vinga S, Martinussen J, Saraiva LM, Kuipers OP, Neves AR.

Front Microbiol. 2018 Mar 6;9:321. doi: 10.3389/fmicb.2018.00321. eCollection 2018.


Specificity and Application of the Lantibiotic Protease NisP.

Montalbán-López M, Deng J, van Heel AJ, Kuipers OP.

Front Microbiol. 2018 Feb 9;9:160. doi: 10.3389/fmicb.2018.00160. eCollection 2018.


Dynamic sporulation gene co-expression networks for Bacillus subtilis 168 and the food-borne isolate Bacillus amyloliquefaciens: a transcriptomic model.

Omony J, de Jong A, Krawczyk AO, Eijlander RT, Kuipers OP.

Microb Genom. 2018 Feb;4(2). doi: 10.1099/mgen.0.000157. Epub 2018 Feb 9.


In vivo selection of sfGFP variants with improved and reliable functionality in industrially important thermophilic bacteria.

Frenzel E, Legebeke J, van Stralen A, van Kranenburg R, Kuipers OP.

Biotechnol Biofuels. 2018 Jan 17;11:8. doi: 10.1186/s13068-017-1008-5. eCollection 2018.


From Cell Death to Metabolism: Holin-Antiholin Homologues with New Functions.

van den Esker MH, Kovács ÁT, Kuipers OP.

mBio. 2017 Dec 5;8(6). pii: e01963-17. doi: 10.1128/mBio.01963-17.


Optimized fluorescent proteins for the rhizosphere-associated bacterium Bacillus mycoides with endophytic and biocontrol agent potential.

Yi Y, Frenzel E, Spoelder J, Elzenga JTM, van Elsas JD, Kuipers OP.

Environ Microbiol Rep. 2018 Feb;10(1):57-74. doi: 10.1111/1758-2229.12607. Epub 2018 Jan 5.


Genome-guided identification of novel head-to-tail cyclized antimicrobial peptides, exemplified by the discovery of pumilarin.

van Heel AJ, Montalban-Lopez M, Oliveau Q, Kuipers OP.

Microb Genom. 2017 Sep 25;3(10):e000134. doi: 10.1099/mgen.0.000134. eCollection 2017 Oct.


Disruption of a Transcriptional Repressor by an Insertion Sequence Element Integration Leads to Activation of a Novel Silent Cellobiose Transporter in Lactococcus lactis MG1363.

Solopova A, Kok J, Kuipers OP.

Appl Environ Microbiol. 2017 Nov 16;83(23). pii: e01279-17. doi: 10.1128/AEM.01279-17. Print 2017 Dec 1.


Editorial: Lactic acid bacteria-a continuing journey in science and application.

Kleerebezem M, Kuipers OP, Smid EJ.

FEMS Microbiol Rev. 2017 Aug 1;41(Supp_1):S1-S2. doi: 10.1093/femsre/fux036. No abstract available.


The Evolution of gene regulation research in Lactococcus lactis.

Kok J, van Gijtenbeek LA, de Jong A, van der Meulen SB, Solopova A, Kuipers OP.

FEMS Microbiol Rev. 2017 Aug 1;41(Supp_1):S220-S243. doi: 10.1093/femsre/fux028. Review.


Comparative Transcriptomics of Bacillus mycoides Strains in Response to Potato-Root Exudates Reveals Different Genetic Adaptation of Endophytic and Soil Isolates.

Yi Y, de Jong A, Frenzel E, Kuipers OP.

Front Microbiol. 2017 Aug 4;8:1487. doi: 10.3389/fmicb.2017.01487. eCollection 2017.


Major gene-regulatory mechanisms operating in ribosomally synthesized and post-translationally modified peptide (RiPP) biosynthesis.

Bartholomae M, Buivydas A, Viel JH, Montalbán-López M, Kuipers OP.

Mol Microbiol. 2017 Oct;106(2):186-206. doi: 10.1111/mmi.13764. Epub 2017 Sep 5. Review.


Unleashing Natural Competence in Lactococcus lactis by Induction of the Competence Regulator ComX.

Mulder J, Wels M, Kuipers OP, Kleerebezem M, Bron PA.

Appl Environ Microbiol. 2017 Sep 29;83(20). pii: e01320-17. doi: 10.1128/AEM.01320-17. Print 2017 Oct 15.


The Staphylococcus aureus α-Acetolactate Synthase ALS Confers Resistance to Nitrosative Stress.

Carvalho SM, de Jong A, Kloosterman TG, Kuipers OP, Saraiva LM.

Front Microbiol. 2017 Jul 11;8:1273. doi: 10.3389/fmicb.2017.01273. eCollection 2017.


Transcriptome analysis shows activation of the arginine deiminase pathway in Lactococcus lactis as a response to ethanol stress.

Díez L, Solopova A, Fernández-Pérez R, González M, Tenorio C, Kuipers OP, Ruiz-Larrea F.

Int J Food Microbiol. 2017 Sep 18;257:41-48. doi: 10.1016/j.ijfoodmicro.2017.05.017. Epub 2017 May 24.


CodY Regulates Thiol Peroxidase Expression as Part of the Pneumococcal Defense Mechanism against H2O2 Stress.

Hajaj B, Yesilkaya H, Shafeeq S, Zhi X, Benisty R, Tchalah S, Kuipers OP, Porat N.

Front Cell Infect Microbiol. 2017 May 24;7:210. doi: 10.3389/fcimb.2017.00210. eCollection 2017.


Editorial: Bacterial pathogens, antibiotics and antibiotic resistance.

Banin E, Hughes D, Kuipers OP.

FEMS Microbiol Rev. 2017 May 1;41(3):450-452. doi: 10.1093/femsre/fux016. No abstract available.


Mining prokaryotes for antimicrobial compounds: from diversity to function.

Tracanna V, de Jong A, Medema MH, Kuipers OP.

FEMS Microbiol Rev. 2017 May 1;41(3):417-429. doi: 10.1093/femsre/fux014. Review.


Cell surface engineering of Bacillus subtilis improves production yields of heterologously expressed α-amylases.

Cao H, van Heel AJ, Ahmed H, Mols M, Kuipers OP.

Microb Cell Fact. 2017 Apr 4;16(1):56. doi: 10.1186/s12934-017-0674-0.

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