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Items: 28

1.

Deficiency of nucleotide excision repair is associated with mutational signature observed in cancer.

Jager M, Blokzijl F, Kuijk E, Bertl J, Vougioukalaki M, Janssen R, Besselink N, Boymans S, de Ligt J, Pedersen JS, Hoeijmakers J, Pothof J, van Boxtel R, Cuppen E.

Genome Res. 2019 Jul;29(7):1067-1077. doi: 10.1101/gr.246223.118. Epub 2019 Jun 20.

2.

Early divergence of mutational processes in human fetal tissues.

Kuijk E, Blokzijl F, Jager M, Besselink N, Boymans S, Chuva de Sousa Lopes SM, van Boxtel R, Cuppen E.

Sci Adv. 2019 May 29;5(5):eaaw1271. doi: 10.1126/sciadv.aaw1271. eCollection 2019 May.

3.

Parental haplotype-specific single-cell transcriptomics reveal incomplete epigenetic reprogramming in human female germ cells.

Vértesy Á, Arindrarto W, Roost MS, Reinius B, Torrens-Juaneda V, Bialecka M, Moustakas I, Ariyurek Y, Kuijk E, Mei H, Sandberg R, van Oudenaarden A, Chuva de Sousa Lopes SM.

Nat Commun. 2018 May 14;9(1):1873. doi: 10.1038/s41467-018-04215-7.

4.

Molecular dissection of germline chromothripsis in a developmental context using patient-derived iPS cells.

Middelkamp S, van Heesch S, Braat AK, de Ligt J, van Iterson M, Simonis M, van Roosmalen MJ, Kelder MJ, Kruisselbrink E, Hochstenbach R, Verbeek NE, Ippel EF, Adolfs Y, Pasterkamp RJ, Kloosterman WP, Kuijk EW, Cuppen E.

Genome Med. 2017 Jan 26;9(1):9. doi: 10.1186/s13073-017-0399-z.

5.

Tissue-specific mutation accumulation in human adult stem cells during life.

Blokzijl F, de Ligt J, Jager M, Sasselli V, Roerink S, Sasaki N, Huch M, Boymans S, Kuijk E, Prins P, Nijman IJ, Martincorena I, Mokry M, Wiegerinck CL, Middendorp S, Sato T, Schwank G, Nieuwenhuis EE, Verstegen MM, van der Laan LJ, de Jonge J, IJzermans JN, Vries RG, van de Wetering M, Stratton MR, Clevers H, Cuppen E, van Boxtel R.

Nature. 2016 Oct 13;538(7624):260-264. doi: 10.1038/nature19768. Epub 2016 Oct 3.

6.

Generation and characterization of rat liver stem cell lines and their engraftment in a rat model of liver failure.

Kuijk EW, Rasmussen S, Blokzijl F, Huch M, Gehart H, Toonen P, Begthel H, Clevers H, Geurts AM, Cuppen E.

Sci Rep. 2016 Feb 26;6:22154. doi: 10.1038/srep22154.

7.

DAZL regulates Tet1 translation in murine embryonic stem cells.

Welling M, Chen HH, Muñoz J, Musheev MU, Kester L, Junker JP, Mischerikow N, Arbab M, Kuijk E, Silberstein L, Kharchenko PV, Geens M, Niehrs C, van de Velde H, van Oudenaarden A, Heck AJ, Geijsen N.

EMBO Rep. 2015 Jul;16(7):791-802. doi: 10.15252/embr.201540538. Epub 2015 Jun 15.

8.

Lack of major genome instability in tumors of p53 null rats.

Hermsen R, Toonen P, Kuijk E, Youssef SA, Kuiper R, van Heesch S, de Bruin A, Cuppen E, Simonis M.

PLoS One. 2015 Mar 26;10(3):e0122066. doi: 10.1371/journal.pone.0122066. eCollection 2015.

9.

Genomic and functional overlap between somatic and germline chromosomal rearrangements.

van Heesch S, Simonis M, van Roosmalen MJ, Pillalamarri V, Brand H, Kuijk EW, de Luca KL, Lansu N, Braat AK, Menelaou A, Hao W, Korving J, Snijder S, van der Veken LT, Hochstenbach R, Knegt AC, Duran K, Renkens I, Alekozai N, Jager M, Vergult S, Menten B, de Bruijn E, Boymans S, Ippel E, van Binsbergen E, Talkowski ME, Lichtenbelt K, Cuppen E, Kloosterman WP.

Cell Rep. 2014 Dec 24;9(6):2001-10. doi: 10.1016/j.celrep.2014.11.022. Epub 2014 Dec 11.

10.

Pluripotency in the light of the developmental hourglass.

Kuijk E, Geijsen N, Cuppen E.

Biol Rev Camb Philos Soc. 2015 May;90(2):428-43. doi: 10.1111/brv.12117. Epub 2014 May 23. Review.

PMID:
24860945
11.

Cell lineage specific distribution of H3K27 trimethylation accumulation in an in vitro model for human implantation.

Teklenburg G, Weimar CH, Fauser BC, Macklon N, Geijsen N, Heijnen CJ, Chuva de Sousa Lopes SM, Kuijk EW.

PLoS One. 2012;7(3):e32701. doi: 10.1371/journal.pone.0032701. Epub 2012 Mar 7.

12.

The roles of FGF and MAP kinase signaling in the segregation of the epiblast and hypoblast cell lineages in bovine and human embryos.

Kuijk EW, van Tol LT, Van de Velde H, Wubbolts R, Welling M, Geijsen N, Roelen BA.

Development. 2012 Mar;139(5):871-82. doi: 10.1242/dev.071688. Epub 2012 Jan 25.

13.

Establishing reference genes for use in real-time quantitative PCR analysis of early equine embryos.

Paris DB, Kuijk EW, Roelen BA, Stout TA.

Reprod Fertil Dev. 2011;23(2):353-63. doi: 10.1071/RD10039.

PMID:
21211469
14.

The different shades of mammalian pluripotent stem cells.

Kuijk EW, Chuva de Sousa Lopes SM, Geijsen N, Macklon N, Roelen BA.

Hum Reprod Update. 2011 Mar-Apr;17(2):254-71. doi: 10.1093/humupd/dmq035. Epub 2010 Aug 12. Review.

15.

A distinct expression pattern in mammalian testes indicates a conserved role for NANOG in spermatogenesis.

Kuijk EW, de Gier J, Lopes SM, Chambers I, van Pelt AM, Colenbrander B, Roelen BA.

PLoS One. 2010 Jun 7;5(6):e10987. doi: 10.1371/journal.pone.0010987.

16.

Natural selection of human embryos: impaired decidualization of endometrium disables embryo-maternal interactions and causes recurrent pregnancy loss.

Salker M, Teklenburg G, Molokhia M, Lavery S, Trew G, Aojanepong T, Mardon HJ, Lokugamage AU, Rai R, Landles C, Roelen BA, Quenby S, Kuijk EW, Kavelaars A, Heijnen CJ, Regan L, Macklon NS, Brosens JJ.

PLoS One. 2010 Apr 21;5(4):e10287. doi: 10.1371/journal.pone.0010287.

17.

Natural selection of human embryos: decidualizing endometrial stromal cells serve as sensors of embryo quality upon implantation.

Teklenburg G, Salker M, Molokhia M, Lavery S, Trew G, Aojanepong T, Mardon HJ, Lokugamage AU, Rai R, Landles C, Roelen BA, Quenby S, Kuijk EW, Kavelaars A, Heijnen CJ, Regan L, Brosens JJ, Macklon NS.

PLoS One. 2010 Apr 21;5(4):e10258. doi: 10.1371/journal.pone.0010258.

18.

PTEN and TRP53 independently suppress Nanog expression in spermatogonial stem cells.

Kuijk EW, van Mil A, Brinkhof B, Penning LC, Colenbrander B, Roelen BA.

Stem Cells Dev. 2010 Jul;19(7):979-88. doi: 10.1089/scd.2009.0276.

PMID:
19845468
19.

The impact of ovarian stimulation for IVF on the developing embryo.

Santos MA, Kuijk EW, Macklon NS.

Reproduction. 2010 Jan;139(1):23-34. doi: 10.1530/REP-09-0187. Review.

PMID:
19710204
20.

The effects of growth factors on in vitro-cultured porcine testicular cells.

Kuijk EW, Colenbrander B, Roelen BA.

Reproduction. 2009 Oct;138(4):721-31. doi: 10.1530/REP-09-0138. Epub 2009 Jul 24.

PMID:
19633132
21.

Blastocyst morphology, actin cytoskeleton quality and chromosome content are correlated with embryo quality in the pig.

Zijlstra C, Kidson A, Schoevers EJ, Daemen AJ, Tharasanit T, Kuijk EW, Hazeleger W, Ducro-Steverink DW, Colenbrander B, Roelen BA.

Theriogenology. 2008 Oct 1;70(6):923-35. doi: 10.1016/j.theriogenology.2008.05.055. Epub 2008 Jul 9.

PMID:
18614224
22.

Differences in early lineage segregation between mammals.

Kuijk EW, Du Puy L, Van Tol HT, Oei CH, Haagsman HP, Colenbrander B, Roelen BA.

Dev Dyn. 2008 Apr;237(4):918-27. doi: 10.1002/dvdy.21480.

23.

Validation of reference genes for quantitative RT-PCR studies in porcine oocytes and preimplantation embryos.

Kuijk EW, du Puy L, van Tol HT, Haagsman HP, Colenbrander B, Roelen BA.

BMC Dev Biol. 2007 May 31;7:58.

24.

Increased cardiomyocyte differentiation from human embryonic stem cells in serum-free cultures.

Passier R, Oostwaard DW, Snapper J, Kloots J, Hassink RJ, Kuijk E, Roelen B, de la Riviere AB, Mummery C.

Stem Cells. 2005 Jun-Jul;23(6):772-80.

25.

Macular pigment: quantitative analysis on autofluorescence images.

Trieschmann M, Spital G, Lommatzsch A, van Kuijk E, Fitzke F, Bird AC, Pauleikhoff D.

Graefes Arch Clin Exp Ophthalmol. 2003 Dec;241(12):1006-12. Epub 2003 Nov 14.

PMID:
14618343
26.

Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals novel gene functions.

Simmer F, Moorman C, van der Linden AM, Kuijk E, van den Berghe PV, Kamath RS, Fraser AG, Ahringer J, Plasterk RH.

PLoS Biol. 2003 Oct;1(1):E12. Epub 2003 Oct 13.

27.

The self-regulation of fatigue and associated complaints: an exploratory simulation.

van Mens-Verhulst J, van Dijkum C, van Kuijk E, Lam N.

Patient Educ Couns. 2003 Jan;49(1):53-7.

PMID:
12527153
28.

Dealing with fatigue: the importance of health-related action patterns.

van Mens-Verhulst J, van Dijkum C, Lam N, van Kuijk E.

Patient Educ Couns. 1999 Jan;36(1):65-74.

PMID:
10036561

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