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Items: 30

1.

Multi-modal regulation of C. elegans hermaphrodite spermatogenesis by the GLD-1-FOG-2 complex.

Hu S, Skelly LE, Kaymak E, Freeberg L, Lo TW, Kuersten S, Ryder SP, Haag ES.

Dev Biol. 2019 Feb 15;446(2):193-205. doi: 10.1016/j.ydbio.2018.11.024. Epub 2018 Dec 30.

PMID:
30599151
2.

New insights into the cellular temporal response to proteostatic stress.

Rendleman J, Cheng Z, Maity S, Kastelic N, Munschauer M, Allgoewer K, Teo G, Zhang YBM, Lei A, Parker B, Landthaler M, Freeberg L, Kuersten S, Choi H, Vogel C.

Elife. 2018 Oct 12;7. pii: e39054. doi: 10.7554/eLife.39054.

3.

Conserved non-AUG uORFs revealed by a novel regression analysis of ribosome profiling data.

Spealman P, Naik AW, May GE, Kuersten S, Freeberg L, Murphy RF, McManus J.

Genome Res. 2018 Feb;28(2):214-222. doi: 10.1101/gr.221507.117. Epub 2017 Dec 18.

4.

Genome-wide analysis of Musashi-2 targets reveals novel functions in governing epithelial cell migration.

Bennett CG, Riemondy K, Chapnick DA, Bunker E, Liu X, Kuersten S, Yi R.

Nucleic Acids Res. 2016 May 5;44(8):3788-800. doi: 10.1093/nar/gkw207. Epub 2016 Mar 31.

5.

SnapShot-Seq: a method for extracting genome-wide, in vivo mRNA dynamics from a single total RNA sample.

Gray JM, Harmin DA, Boswell SA, Cloonan N, Mullen TE, Ling JJ, Miller N, Kuersten S, Ma YC, McCarroll SA, Grimmond SM, Springer M.

PLoS One. 2014 Feb 26;9(2):e89673. doi: 10.1371/journal.pone.0089673. eCollection 2014.

6.

Genomic analyses reveal broad impact of miR-137 on genes associated with malignant transformation and neuronal differentiation in glioblastoma cells.

Tamim S, Vo DT, Uren PJ, Qiao M, Bindewald E, Kasprzak WK, Shapiro BA, Nakaya HI, Burns SC, Araujo PR, Nakano I, Radek AJ, Kuersten S, Smith AD, Penalva LO.

PLoS One. 2014 Jan 22;9(1):e85591. doi: 10.1371/journal.pone.0085591. eCollection 2014.

7.

Thermostable group II intron reverse transcriptase fusion proteins and their use in cDNA synthesis and next-generation RNA sequencing.

Mohr S, Ghanem E, Smith W, Sheeter D, Qin Y, King O, Polioudakis D, Iyer VR, Hunicke-Smith S, Swamy S, Kuersten S, Lambowitz AM.

RNA. 2013 Jul;19(7):958-70. doi: 10.1261/rna.039743.113. Epub 2013 May 22.

8.

Translation regulation gets its 'omics' moment.

Kuersten S, Radek A, Vogel C, Penalva LO.

Wiley Interdiscip Rev RNA. 2013 Nov-Dec;4(6):617-30. doi: 10.1002/wrna.1173. Epub 2013 May 15. Review.

9.

A simple and novel method for RNA-seq library preparation of single cell cDNA analysis by hyperactive Tn5 transposase.

Brouilette S, Kuersten S, Mein C, Bozek M, Terry A, Dias KR, Bhaw-Rosun L, Shintani Y, Coppen S, Ikebe C, Sawhney V, Campbell N, Kaneko M, Tano N, Ishida H, Suzuki K, Yashiro K.

Dev Dyn. 2012 Oct;241(10):1584-90. doi: 10.1002/dvdy.23850. Epub 2012 Aug 28.

10.

Integrated genome analysis suggests that most conserved non-coding sequences are regulatory factor binding sites.

Hemberg M, Gray JM, Cloonan N, Kuersten S, Grimmond S, Greenberg ME, Kreiman G.

Nucleic Acids Res. 2012 Sep;40(16):7858-69. doi: 10.1093/nar/gks477. Epub 2012 Jun 8.

11.

MicroRNAs and their isomiRs function cooperatively to target common biological pathways.

Cloonan N, Wani S, Xu Q, Gu J, Lea K, Heater S, Barbacioru C, Steptoe AL, Martin HC, Nourbakhsh E, Krishnan K, Gardiner B, Wang X, Nones K, Steen JA, Matigian NA, Wood DL, Kassahn KS, Waddell N, Shepherd J, Lee C, Ichikawa J, McKernan K, Bramlett K, Kuersten S, Grimmond SM.

Genome Biol. 2011 Dec 30;12(12):R126. doi: 10.1186/gb-2011-12-12-r126.

12.

Transposase mediated construction of RNA-seq libraries.

Gertz J, Varley KE, Davis NS, Baas BJ, Goryshin IY, Vaidyanathan R, Kuersten S, Myers RM.

Genome Res. 2012 Jan;22(1):134-41. doi: 10.1101/gr.127373.111. Epub 2011 Nov 29. Erratum in: Genome Res. 2012 Mar;22(3):592.

13.

Deep-transcriptome and ribonome sequencing redefines the molecular networks of pluripotency and the extracellular space in human embryonic stem cells.

Kolle G, Shepherd JL, Gardiner B, Kassahn KS, Cloonan N, Wood DL, Nourbakhsh E, Taylor DF, Wani S, Chy HS, Zhou Q, McKernan K, Kuersten S, Laslett AL, Grimmond SM.

Genome Res. 2011 Dec;21(12):2014-25. doi: 10.1101/gr.119321.110. Epub 2011 Oct 31.

14.

SL trans-splicing in a Caenorhabditis elegans in vitro extract.

Lasda EL, Kuersten S, Blumenthal T.

Cold Spring Harb Protoc. 2011 Feb 1;2011(2):pdb.prot5574. doi: 10.1101/pdb.prot5574. No abstract available.

15.

Widespread transcription at neuronal activity-regulated enhancers.

Kim TK, Hemberg M, Gray JM, Costa AM, Bear DM, Wu J, Harmin DA, Laptewicz M, Barbara-Haley K, Kuersten S, Markenscoff-Papadimitriou E, Kuhl D, Bito H, Worley PF, Kreiman G, Greenberg ME.

Nature. 2010 May 13;465(7295):182-7. doi: 10.1038/nature09033. Epub 2010 Apr 14.

16.

Synthesis and activity of modified cytidine 5'-monophosphate probes for T4 RNA ligase 1.

Kore AR, Charles I, Yang L, Kuersten S.

Nucleosides Nucleotides Nucleic Acids. 2009 Apr;28(4):292-302. doi: 10.1080/15257770902946181.

PMID:
20183582
17.

Tumor transcriptome sequencing reveals allelic expression imbalances associated with copy number alterations.

Tuch BB, Laborde RR, Xu X, Gu J, Chung CB, Monighetti CK, Stanley SJ, Olsen KD, Kasperbauer JL, Moore EJ, Broomer AJ, Tan R, Brzoska PM, Muller MW, Siddiqui AS, Asmann YW, Sun Y, Kuersten S, Barker MA, De La Vega FM, Smith DI.

PLoS One. 2010 Feb 19;5(2):e9317. doi: 10.1371/journal.pone.0009317.

18.

Limitations and possibilities of small RNA digital gene expression profiling.

Linsen SE, de Wit E, Janssens G, Heater S, Chapman L, Parkin RK, Fritz B, Wyman SK, de Bruijn E, Voest EE, Kuersten S, Tewari M, Cuppen E.

Nat Methods. 2009 Jul;6(7):474-6. doi: 10.1038/nmeth0709-474. No abstract available.

PMID:
19564845
19.

Linking nuclear mRNP assembly and cytoplasmic destiny.

Kuersten S, Goodwin EB.

Biol Cell. 2005 Jun;97(6):469-78. Review.

PMID:
15901247
20.

NXF-2, REF-1, and REF-2 affect the choice of nuclear export pathway for tra-2 mRNA in C. elegans.

Kuersten S, Segal SP, Verheyden J, LaMartina SM, Goodwin EB.

Mol Cell. 2004 Jun 4;14(5):599-610.

21.

The power of the 3' UTR: translational control and development.

Kuersten S, Goodwin EB.

Nat Rev Genet. 2003 Aug;4(8):626-37. Review.

PMID:
12897774
22.

An uncapped RNA suggests a model for Caenorhabditis elegans polycistronic pre-mRNA processing.

Liu Y, Kuersten S, Huang T, Larsen A, MacMorris M, Blumenthal T.

RNA. 2003 Jun;9(6):677-87.

23.

Steady-state nuclear localization of exportin-t involves RanGTP binding and two distinct nuclear pore complex interaction domains.

Kuersten S, Arts GJ, Walther TC, Englmeier L, Mattaj IW.

Mol Cell Biol. 2002 Aug;22(16):5708-20.

24.

Identity elements used in export of mRNAs.

Ohno M, Segref A, Kuersten S, Mattaj IW.

Mol Cell. 2002 Mar;9(3):659-71.

25.

Nucleocytoplasmic transport: Ran, beta and beyond.

Kuersten S, Ohno M, Mattaj IW.

Trends Cell Biol. 2001 Dec;11(12):497-503. Review.

PMID:
11719056
26.

Herpes simplex virus ICP27 protein provides viral mRNAs with access to the cellular mRNA export pathway.

Koffa MD, Clements JB, Izaurralde E, Wadd S, Wilson SA, Mattaj IW, Kuersten S.

EMBO J. 2001 Oct 15;20(20):5769-78.

27.

Intercistronic region required for polycistronic pre-mRNA processing in Caenorhabditis elegans.

Huang T, Kuersten S, Deshpande AM, Spieth J, MacMorris M, Blumenthal T.

Mol Cell Biol. 2001 Feb;21(4):1111-20.

28.

The role of exportin-t in selective nuclear export of mature tRNAs.

Arts GJ, Kuersten S, Romby P, Ehresmann B, Mattaj IW.

EMBO J. 1998 Dec 15;17(24):7430-41.

29.
30.

Operons in C. elegans: polycistronic mRNA precursors are processed by trans-splicing of SL2 to downstream coding regions.

Spieth J, Brooke G, Kuersten S, Lea K, Blumenthal T.

Cell. 1993 May 7;73(3):521-32.

PMID:
8098272

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