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Items: 41

1.

TGF-β Signaling Promotes Tissue Formation during Cardiac Valve Regeneration in Adult Zebrafish.

Bensimon-Brito A, Ramkumar S, Boezio GLM, Guenther S, Kuenne C, Helker CSM, Sánchez-Iranzo H, Iloska D, Piesker J, Pullamsetti S, Mercader N, Beis D, Stainier DYR.

Dev Cell. 2020 Jan 6;52(1):9-20.e7. doi: 10.1016/j.devcel.2019.10.027. Epub 2019 Nov 27.

PMID:
31786069
2.

Aging Triggers H3K27 Trimethylation Hoarding in the Chromatin of Nothobranchius furzeri Skeletal Muscle.

Cencioni C, Heid J, Krepelova A, Rasa SMM, Kuenne C, Guenther S, Baumgart M, Cellerino A, Neri F, Spallotta F, Gaetano C.

Cells. 2019 Sep 28;8(10). pii: E1169. doi: 10.3390/cells8101169.

3.

Induction of interferon-stimulated genes and cellular stress pathways by morpholinos in zebrafish.

Lai JKH, Gagalova KK, Kuenne C, El-Brolosy MA, Stainier DYR.

Dev Biol. 2019 Oct 1;454(1):21-28. doi: 10.1016/j.ydbio.2019.06.008. Epub 2019 Jun 12.

PMID:
31201802
4.

Genome-wide strategies reveal target genes of Npas4l associated with vascular development in zebrafish.

Marass M, Beisaw A, Gerri C, Luzzani F, Fukuda N, Günther S, Kuenne C, Reischauer S, Stainier DYR.

Development. 2019 Jun 3;146(11). pii: dev173427. doi: 10.1242/dev.173427.

5.

Pioneering function of Isl1 in the epigenetic control of cardiomyocyte cell fate.

Gao R, Liang X, Cheedipudi S, Cordero J, Jiang X, Zhang Q, Caputo L, Günther S, Kuenne C, Ren Y, Bhattacharya S, Yuan X, Barreto G, Chen Y, Braun T, Evans SM, Sun Y, Dobreva G.

Cell Res. 2019 Jun;29(6):486-501. doi: 10.1038/s41422-019-0168-1. Epub 2019 Apr 25.

6.

Genetic compensation triggered by mutant mRNA degradation.

El-Brolosy MA, Kontarakis Z, Rossi A, Kuenne C, Günther S, Fukuda N, Kikhi K, Boezio GLM, Takacs CM, Lai SL, Fukuda R, Gerri C, Giraldez AJ, Stainier DYR.

Nature. 2019 Apr;568(7751):193-197. doi: 10.1038/s41586-019-1064-z. Epub 2019 Apr 3.

7.

Correction: Loss of the Mia40a oxidoreductase leads to hepato-pancreatic insufficiency in zebrafish.

Sokol AM, Uszczynska-Ratajczak B, Collins MM, Bazala M, Topf U, Lundegaard PR, Sugunan S, Guenther S, Kuenne C, Graumann J, Chan SSL, Stainier DYR, Chacinska A.

PLoS Genet. 2019 Jan 31;15(1):e1007972. doi: 10.1371/journal.pgen.1007972. eCollection 2019 Jan.

8.

The flow responsive transcription factor Klf2 is required for myocardial wall integrity by modulating Fgf signaling.

Rasouli SJ, El-Brolosy M, Tsedeke AT, Bensimon-Brito A, Ghanbari P, Maischein HM, Kuenne C, Stainier DY.

Elife. 2018 Dec 28;7. pii: e38889. doi: 10.7554/eLife.38889.

9.

WIlsON: Web-based Interactive Omics VisualizatioN.

Schultheis H, Kuenne C, Preussner J, Wiegandt R, Fust A, Bentsen M, Looso M.

Bioinformatics. 2019 Mar 15;35(6):1055-1057. doi: 10.1093/bioinformatics/bty711.

10.

Loss of the Mia40a oxidoreductase leads to hepato-pancreatic insufficiency in zebrafish.

Sokol AM, Uszczynska-Ratajczak B, Collins MM, Bazala M, Topf U, Lundegaard PR, Sugunan S, Guenther S, Kuenne C, Graumann J, Chan SSL, Stainier DYR, Chacinska A.

PLoS Genet. 2018 Nov 20;14(11):e1007743. doi: 10.1371/journal.pgen.1007743. eCollection 2018 Nov. Erratum in: PLoS Genet. 2019 Jan 31;15(1):e1007972.

11.

Single cell RNA-seq and ATAC-seq analysis of cardiac progenitor cell transition states and lineage settlement.

Jia G, Preussner J, Chen X, Guenther S, Yuan X, Yekelchyk M, Kuenne C, Looso M, Zhou Y, Teichmann S, Braun T.

Nat Commun. 2018 Nov 19;9(1):4877. doi: 10.1038/s41467-018-07307-6.

12.

Loss of pyruvate kinase M2 limits growth and triggers innate immune signaling in endothelial cells.

Stone OA, El-Brolosy M, Wilhelm K, Liu X, Romão AM, Grillo E, Lai JKH, Günther S, Jeratsch S, Kuenne C, Lee IC, Braun T, Santoro MM, Locasale JW, Potente M, Stainier DYR.

Nat Commun. 2018 Oct 9;9(1):4077. doi: 10.1038/s41467-018-06406-8.

13.

Zeb1-Hdac2-eNOS circuitry identifies early cardiovascular precursors in naive mouse embryonic stem cells.

Cencioni C, Spallotta F, Savoia M, Kuenne C, Guenther S, Re A, Wingert S, Rehage M, Sürün D, Siragusa M, Smith JG, Schnütgen F, von Melchner H, Rieger MA, Martelli F, Riccio A, Fleming I, Braun T, Zeiher AM, Farsetti A, Gaetano C.

Nat Commun. 2018 Mar 29;9(1):1281. doi: 10.1038/s41467-018-03668-0.

14.

Age-dependent increase of oxidative stress regulates microRNA-29 family preserving cardiac health.

Heid J, Cencioni C, Ripa R, Baumgart M, Atlante S, Milano G, Scopece A, Kuenne C, Guenther S, Azzimato V, Farsetti A, Rossi G, Braun T, Pompilio G, Martelli F, Zeiher AM, Cellerino A, Gaetano C, Spallotta F.

Sci Rep. 2017 Dec 4;7(1):16839. doi: 10.1038/s41598-017-16829-w.

15.

The NADPH organizers NoxO1 and p47phox are both mediators of diabetes-induced vascular dysfunction in mice.

Rezende F, Moll F, Walter M, Helfinger V, Hahner F, Janetzko P, Ringel C, Weigert A, Fleming I, Weissmann N, Kuenne C, Looso M, Rieger MA, Nawroth P, Fleming T, Brandes RP, Schröder K.

Redox Biol. 2018 May;15:12-21. doi: 10.1016/j.redox.2017.11.014. Epub 2017 Nov 22.

16.

Stable Oxidative Cytosine Modifications Accumulate in Cardiac Mesenchymal Cells From Type2 Diabetes Patients: Rescue by α-Ketoglutarate and TET-TDG Functional Reactivation.

Spallotta F, Cencioni C, Atlante S, Garella D, Cocco M, Mori M, Mastrocola R, Kuenne C, Guenther S, Nanni S, Azzimato V, Zukunft S, Kornberger A, Sürün D, Schnütgen F, von Melchner H, Di Stilo A, Aragno M, Braspenning M, van Criekinge W, De Blasio MJ, Ritchie RH, Zaccagnini G, Martelli F, Farsetti A, Fleming I, Braun T, Beiras-Fernandez A, Botta B, Collino M, Bertinaria M, Zeiher AM, Gaetano C.

Circ Res. 2018 Jan 5;122(1):31-46. doi: 10.1161/CIRCRESAHA.117.311300. Epub 2017 Nov 20.

17.

Reciprocal analyses in zebrafish and medaka reveal that harnessing the immune response promotes cardiac regeneration.

Lai SL, Marín-Juez R, Moura PL, Kuenne C, Lai JKH, Tsedeke AT, Guenther S, Looso M, Stainier DY.

Elife. 2017 Jun 20;6. pii: e25605. doi: 10.7554/eLife.25605.

18.

UROPA: a tool for Universal RObust Peak Annotation.

Kondili M, Fust A, Preussner J, Kuenne C, Braun T, Looso M.

Sci Rep. 2017 Jun 1;7(1):2593. doi: 10.1038/s41598-017-02464-y.

19.

LimiTT: link miRNAs to targets.

Bayer J, Kuenne C, Preussner J, Looso M.

BMC Bioinformatics. 2016 May 11;17(1):210. doi: 10.1186/s12859-016-1070-1.

20.

ADMIRE: analysis and visualization of differential methylation in genomic regions using the Infinium HumanMethylation450 Assay.

Preussner J, Bayer J, Kuenne C, Looso M.

Epigenetics Chromatin. 2015 Dec 1;8:51. doi: 10.1186/s13072-015-0045-1. eCollection 2015.

21.

RNA-Seq analysis of isolated satellite cells in Prmt5 deficient mice.

Kuenne C, Guenther S, Looso M, Zhang T, Krueger M, Zhou Y, Braun T, Kim J.

Genom Data. 2015 Jun 3;5:122-5. doi: 10.1016/j.gdata.2015.05.013. eCollection 2015 Sep.

22.

Identification of the orphan gene Prod 1 in basal and other salamander families.

Geng J, Gates PB, Kumar A, Guenther S, Garza-Garcia A, Kuenne C, Zhang P, Looso M, Brockes JP.

Evodevo. 2015 Apr 11;6:9. doi: 10.1186/s13227-015-0006-6. eCollection 2015.

23.

MIRPIPE: quantification of microRNAs in niche model organisms.

Kuenne C, Preussner J, Herzog M, Braun T, Looso M.

Bioinformatics. 2014 Dec 1;30(23):3412-3. doi: 10.1093/bioinformatics/btu573. Epub 2014 Aug 26.

24.

Complete Genome Sequence of the Probiotic Enterococcus faecalis Symbioflor 1 Clone DSM 16431.

Fritzenwanker M, Kuenne C, Billion A, Hain T, Zimmermann K, Goesmann A, Chakraborty T, Domann E.

Genome Announc. 2013 Jan;1(1). pii: e00165-12. doi: 10.1128/genomeA.00165-12. Epub 2013 Feb 7.

25.

Reassessment of the Listeria monocytogenes pan-genome reveals dynamic integration hotspots and mobile genetic elements as major components of the accessory genome.

Kuenne C, Billion A, Mraheil MA, Strittmatter A, Daniel R, Goesmann A, Barbuddhe S, Hain T, Chakraborty T.

BMC Genomics. 2013 Jan 22;14:47. doi: 10.1186/1471-2164-14-47.

26.

Complete genome sequence of the porcine isolate Enterococcus faecalis D32.

Zischka M, Kuenne C, Blom J, Dabrowski PW, Linke B, Hain T, Nitsche A, Goesmann A, Larsen J, Jensen LB, Witte W, Werner G.

J Bacteriol. 2012 Oct;194(19):5490-1. doi: 10.1128/JB.01298-12.

27.

sRNAdb: a small non-coding RNA database for gram-positive bacteria.

Pischimarov J, Kuenne C, Billion A, Hemberger J, Cemič F, Chakraborty T, Hain T.

BMC Genomics. 2012 Aug 10;13:384. doi: 10.1186/1471-2164-13-384.

28.

Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes.

Hain T, Ghai R, Billion A, Kuenne CT, Steinweg C, Izar B, Mohamed W, Mraheil MA, Domann E, Schaffrath S, Kärst U, Goesmann A, Oehm S, Pühler A, Merkl R, Vorwerk S, Glaser P, Garrido P, Rusniok C, Buchrieser C, Goebel W, Chakraborty T.

BMC Genomics. 2012 Apr 24;13:144. doi: 10.1186/1471-2164-13-144.

29.

Genome-wide identification of small RNAs in the opportunistic pathogen Enterococcus faecalis V583.

Shioya K, Michaux C, Kuenne C, Hain T, Verneuil N, Budin-Verneuil A, Hartsch T, Hartke A, Giard JC.

PLoS One. 2011;6(9):e23948. doi: 10.1371/journal.pone.0023948. Epub 2011 Sep 2.

30.

Highly specific and quick detection of Mycobacterium avium subsp. paratuberculosis in feces and gut tissue of cattle and humans by multiple real-time PCR assays.

Imirzalioglu C, Dahmen H, Hain T, Billion A, Kuenne C, Chakraborty T, Domann E.

J Clin Microbiol. 2011 May;49(5):1843-52. doi: 10.1128/JCM.01492-10. Epub 2011 Mar 23.

31.

The intracellular sRNA transcriptome of Listeria monocytogenes during growth in macrophages.

Mraheil MA, Billion A, Mohamed W, Mukherjee K, Kuenne C, Pischimarov J, Krawitz C, Retey J, Hartsch T, Chakraborty T, Hain T.

Nucleic Acids Res. 2011 May;39(10):4235-48. doi: 10.1093/nar/gkr033. Epub 2011 Jan 29.

32.

Comparative genome-wide analysis of small RNAs of major Gram-positive pathogens: from identification to application.

Mraheil MA, Billion A, Kuenne C, Pischimarov J, Kreikemeyer B, Engelmann S, Hartke A, Giard JC, Rupnik M, Vorwerk S, Beier M, Retey J, Hartsch T, Jacob A, Cemič F, Hemberger J, Chakraborty T, Hain T.

Microb Biotechnol. 2010 Nov;3(6):658-76. doi: 10.1111/j.1751-7915.2010.00171.x. Review.

33.

Comparative analysis of plasmids in the genus Listeria.

Kuenne C, Voget S, Pischimarov J, Oehm S, Goesmann A, Daniel R, Hain T, Chakraborty T.

PLoS One. 2010 Sep 2;5(9). pii: e12511. doi: 10.1371/journal.pone.0012511.

34.

Complete genome sequence of Listeria seeligeri, a nonpathogenic member of the genus Listeria.

Steinweg C, Kuenne CT, Billion A, Mraheil MA, Domann E, Ghai R, Barbuddhe SB, Kärst U, Goesmann A, Pühler A, Weisshaar B, Wehland J, Lampidis R, Kreft J, Goebel W, Chakraborty T, Hain T.

J Bacteriol. 2010 Mar;192(5):1473-4. doi: 10.1128/JB.01415-09. Epub 2010 Jan 8.

35.

Temporal transcriptomic analysis of the Listeria monocytogenes EGD-e sigmaB regulon.

Hain T, Hossain H, Chatterjee SS, Machata S, Volk U, Wagner S, Brors B, Haas S, Kuenne CT, Billion A, Otten S, Pane-Farre J, Engelmann S, Chakraborty T.

BMC Microbiol. 2008 Jan 28;8:20. doi: 10.1186/1471-2180-8-20.

36.

Pathogenomics of Listeria spp.

Hain T, Chatterjee SS, Ghai R, Kuenne CT, Billion A, Steinweg C, Domann E, Kärst U, Jänsch L, Wehland J, Eisenreich W, Bacher A, Joseph B, Schär J, Kreft J, Klumpp J, Loessner MJ, Dorscht J, Neuhaus K, Fuchs TM, Scherer S, Doumith M, Jacquet C, Martin P, Cossart P, Rusniock C, Glaser P, Buchrieser C, Goebel W, Chakraborty T.

Int J Med Microbiol. 2007 Nov;297(7-8):541-57. Epub 2007 May 7. Review.

PMID:
17482873
37.

Comparative genomic analysis for the presence of potential enterococcal virulence factors in the probiotic Enterococcus faecalis strain Symbioflor 1.

Domann E, Hain T, Ghai R, Billion A, Kuenne C, Zimmermann K, Chakraborty T.

Int J Med Microbiol. 2007 Nov;297(7-8):533-9. Epub 2007 Apr 27.

PMID:
17466591
38.

GECO--linear visualization for comparative genomics.

Kuenne CT, Ghai R, Chakraborty T, Hain T.

Bioinformatics. 2007 Jan 1;23(1):125-6. Epub 2006 Oct 31.

PMID:
17077098
39.

Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenes.

Hain T, Steinweg C, Kuenne CT, Billion A, Ghai R, Chatterjee SS, Domann E, Kärst U, Goesmann A, Bekel T, Bartels D, Kaiser O, Meyer F, Pühler A, Weisshaar B, Wehland J, Liang C, Dandekar T, Lampidis R, Kreft J, Goebel W, Chakraborty T.

J Bacteriol. 2006 Nov;188(21):7405-15. Epub 2006 Aug 25.

40.

Intracellular gene expression profile of Listeria monocytogenes.

Chatterjee SS, Hossain H, Otten S, Kuenne C, Kuchmina K, Machata S, Domann E, Chakraborty T, Hain T.

Infect Immun. 2006 Feb;74(2):1323-38.

41.

Use of market segmentation to identify untapped consumer needs in vision correction surgery for future growth.

Loarie TM, Applegate D, Kuenne CB, Choi LJ, Horowitz DP.

J Refract Surg. 2003 Sep-Oct;19(5):566-76.

PMID:
14518746

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