Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 18

1.

HLA Class II Antigen Processing and Presentation Pathway Components Demonstrated by Transcriptome and Protein Analyses of islet β-Cells from Donors with Type 1 Diabetes.

Russell MA, Redick SD, Blodgett DM, Richardson SJ, Leete P, Krogvold L, Dahl-Jørgensen K, Bottino R, Brissova M, Spaeth JM, Babon JAB, Haliyur R, Powers AC, Yang C, Kent SC, Derr AG, Kucukural A, Garber MG, Morgan NG, Harlan DM.

Diabetes. 2019 Mar 4. pii: db180686. doi: 10.2337/db18-0686. [Epub ahead of print]

PMID:
30833470
2.

DEBrowser: interactive differential expression analysis and visualization tool for count data.

Kucukural A, Yukselen O, Ozata DM, Moore MJ, Garber M.

BMC Genomics. 2019 Jan 5;20(1):6. doi: 10.1186/s12864-018-5362-x.

3.

Comparative Analysis of Immune Cells Reveals a Conserved Regulatory Lexicon.

Donnard E, Vangala P, Afik S, McCauley S, Nowosielska A, Kucukural A, Tabak B, Zhu X, Diehl W, McDonel P, Yosef N, Luban J, Garber M.

Cell Syst. 2018 Mar 28;6(3):381-394.e7. doi: 10.1016/j.cels.2018.01.002. Epub 2018 Feb 14.

PMID:
29454939
4.

GUIDEseq: a bioconductor package to analyze GUIDE-Seq datasets for CRISPR-Cas nucleases.

Zhu LJ, Lawrence M, Gupta A, Pagès H, Kucukural A, Garber M, Wolfe SA.

BMC Genomics. 2017 May 15;18(1):379. doi: 10.1186/s12864-017-3746-y.

5.

Ebola Virus Glycoprotein with Increased Infectivity Dominated the 2013-2016 Epidemic.

Diehl WE, Lin AE, Grubaugh ND, Carvalho LM, Kim K, Kyawe PP, McCauley SM, Donnard E, Kucukural A, McDonel P, Schaffner SF, Garber M, Rambaut A, Andersen KG, Sabeti PC, Luban J.

Cell. 2016 Nov 3;167(4):1088-1098.e6. doi: 10.1016/j.cell.2016.10.014.

6.

Comparison of RNA isolation and associated methods for extracellular RNA detection by high-throughput quantitative polymerase chain reaction.

Tanriverdi K, Kucukural A, Mikhalev E, Tanriverdi SE, Lee R, Ambros VR, Freedman JE.

Anal Biochem. 2016 May 15;501:66-74. doi: 10.1016/j.ab.2016.02.019. Epub 2016 Mar 10.

PMID:
26969789
7.

Platelet functional and transcriptional changes induced by intralipid infusion.

Beaulieu LM, Vitseva O, Tanriverdi K, Kucukural A, Mick E, Hamburg N, Vita J, Freedman JE.

Thromb Haemost. 2016 Jun 2;115(6):1147-56. doi: 10.1160/TH15-09-0739. Epub 2016 Mar 3.

PMID:
26940969
8.

Biogenesis and function of tRNA fragments during sperm maturation and fertilization in mammals.

Sharma U, Conine CC, Shea JM, Boskovic A, Derr AG, Bing XY, Belleannee C, Kucukural A, Serra RW, Sun F, Song L, Carone BR, Ricci EP, Li XZ, Fauquier L, Moore MJ, Sullivan R, Mello CC, Garber M, Rando OJ.

Science. 2016 Jan 22;351(6271):391-396. doi: 10.1126/science.aad6780. Epub 2015 Dec 31.

9.

Genetic and Epigenetic Variation, but Not Diet, Shape the Sperm Methylome.

Shea JM, Serra RW, Carone BR, Shulha HP, Kucukural A, Ziller MJ, Vallaster MP, Gu H, Tapper AR, Gardner PD, Meissner A, Garber M, Rando OJ.

Dev Cell. 2015 Dec 21;35(6):750-8. doi: 10.1016/j.devcel.2015.11.024.

10.

Novel Observations From Next-Generation RNA Sequencing of Highly Purified Human Adult and Fetal Islet Cell Subsets.

Blodgett DM, Nowosielska A, Afik S, Pechhold S, Cura AJ, Kennedy NJ, Kim S, Kucukural A, Davis RJ, Kent SC, Greiner DL, Garber MG, Harlan DM, diIorio P.

Diabetes. 2015 Sep;64(9):3172-81. doi: 10.2337/db15-0039. Epub 2015 Apr 30.

11.

Simultaneous generation of many RNA-seq libraries in a single reaction.

Shishkin AA, Giannoukos G, Kucukural A, Ciulla D, Busby M, Surka C, Chen J, Bhattacharyya RP, Rudy RF, Patel MM, Novod N, Hung DT, Gnirke A, Garber M, Guttman M, Livny J.

Nat Methods. 2015 Apr;12(4):323-5. doi: 10.1038/nmeth.3313. Epub 2015 Mar 2.

12.

Staufen1 senses overall transcript secondary structure to regulate translation.

Ricci EP, Kucukural A, Cenik C, Mercier BC, Singh G, Heyer EE, Ashar-Patel A, Peng L, Moore MJ.

Nat Struct Mol Biol. 2014 Jan;21(1):26-35. doi: 10.1038/nsmb.2739. Epub 2013 Dec 15.

13.

ASPeak: an abundance sensitive peak detection algorithm for RIP-Seq.

Kucukural A, Özadam H, Singh G, Moore MJ, Cenik C.

Bioinformatics. 2013 Oct 1;29(19):2485-6. doi: 10.1093/bioinformatics/btt428. Epub 2013 Aug 8.

14.

The Cellular EJC Interactome Reveals Higher-Order mRNP Structure and an EJC-SR Protein Nexus.

Singh G, Kucukural A, Cenik C, Leszyk JD, Shaffer SA, Weng Z, Moore MJ.

Cell. 2012 Nov 9;151(4):915-916. doi: 10.1016/j.cell.2012.10.032. Epub 2012 Nov 8. No abstract available.

15.

The cellular EJC interactome reveals higher-order mRNP structure and an EJC-SR protein nexus.

Singh G, Kucukural A, Cenik C, Leszyk JD, Shaffer SA, Weng Z, Moore MJ.

Cell. 2012 Nov 9;151(4):750-764. doi: 10.1016/j.cell.2012.10.007. Epub 2012 Oct 18. Erratum in: Cell. 2012 Nov 9;151(4):915-6. Cell. 2012 Nov 9;151(4):915-916.

16.

Generation and Analysis of Expressed Sequence Tags from Olea europaea L.

Ozdemir Ozgenturk N, Oruç F, Sezerman U, Kuçukural A, Vural Korkut S, Toksoz F, Un C.

Comp Funct Genomics. 2010;2010:757512. doi: 10.1155/2010/757512. Epub 2010 Dec 8.

17.

Identification of neuronal RNA targets of TDP-43-containing ribonucleoprotein complexes.

Sephton CF, Cenik C, Kucukural A, Dammer EB, Cenik B, Han Y, Dewey CM, Roth FP, Herz J, Peng J, Moore MJ, Yu G.

J Biol Chem. 2011 Jan 14;286(2):1204-15. doi: 10.1074/jbc.M110.190884. Epub 2010 Nov 4.

18.

I-TASSER: a unified platform for automated protein structure and function prediction.

Roy A, Kucukural A, Zhang Y.

Nat Protoc. 2010 Apr;5(4):725-38. doi: 10.1038/nprot.2010.5. Epub 2010 Mar 25.

Supplemental Content

Loading ...
Support Center