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Items: 10

1.

MHCquant: Automated and Reproducible Data Analysis for Immunopeptidomics.

Bichmann L, Nelde A, Ghosh M, Heumos L, Mohr C, Peltzer A, Kuchenbecker L, Sachsenberg T, Walz JS, Stevanović S, Rammensee HG, Kohlbacher O.

J Proteome Res. 2019 Nov 1;18(11):3876-3884. doi: 10.1021/acs.jproteome.9b00313. Epub 2019 Oct 22.

PMID:
31589052
2.

BKV Clearance Time Correlates With Exhaustion State and T-Cell Receptor Repertoire Shape of BKV-Specific T-Cells in Renal Transplant Patients.

Stervbo U, Nienen M, Weist BJD, Kuchenbecker L, Hecht J, Wehler P, Westhoff TH, Reinke P, Babel N.

Front Immunol. 2019 Apr 10;10:767. doi: 10.3389/fimmu.2019.00767. eCollection 2019.

3.

The Role of Pre-existing Cross-Reactive Central Memory CD4 T-Cells in Vaccination With Previously Unseen Influenza Strains.

Nienen M, Stervbo U, Mölder F, Kaliszczyk S, Kuchenbecker L, Gayova L, Schweiger B, Jürchott K, Hecht J, Neumann AU, Rahmann S, Westhoff T, Reinke P, Thiel A, Babel N.

Front Immunol. 2019 Apr 4;10:593. doi: 10.3389/fimmu.2019.00593. eCollection 2019.

4.

Finding approximate gene clusters with Gecko 3.

Winter S, Jahn K, Wehner S, Kuchenbecker L, Marz M, Stoye J, Böcker S.

Nucleic Acids Res. 2016 Nov 16;44(20):9600-9610. Epub 2016 Sep 26.

5.

Comment on "Tracking donor-reactive T cells: Evidence for clonal deletion in tolerant kidney transplant patients".

Gorochov G, Larsen M, Parizot C, Brisson H, Nienen M, Kuchenbecker L, Babel N, Neumann AU.

Sci Transl Med. 2015 Jul 22;7(297):297le1. doi: 10.1126/scitranslmed.aab1994. No abstract available.

PMID:
26203079
6.

Human CD45RA(-) FoxP3(hi) Memory-Type Regulatory T Cells Show Distinct TCR Repertoires With Conventional T Cells and Play an Important Role in Controlling Early Immune Activation.

Lei H, Kuchenbecker L, Streitz M, Sawitzki B, Vogt K, Landwehr-Kenzel S, Millward J, Juelke K, Babel N, Neumann A, Reinke P, Volk HD.

Am J Transplant. 2015 Oct;15(10):2625-35. doi: 10.1111/ajt.13315. Epub 2015 May 18.

7.

IMSEQ--a fast and error aware approach to immunogenetic sequence analysis.

Kuchenbecker L, Nienen M, Hecht J, Neumann AU, Babel N, Reinert K, Robinson PN.

Bioinformatics. 2015 Sep 15;31(18):2963-71. doi: 10.1093/bioinformatics/btv309. Epub 2015 May 18.

PMID:
25987567
8.

Methods for the detection and assembly of novel sequence in high-throughput sequencing data.

Holtgrewe M, Kuchenbecker L, Reinert K.

Bioinformatics. 2015 Jun 15;31(12):1904-12. doi: 10.1093/bioinformatics/btv051. Epub 2015 Feb 2.

PMID:
25649620
9.

TCR repertoire analysis by next generation sequencing allows complex differential diagnosis of T cell-related pathology.

Dziubianau M, Hecht J, Kuchenbecker L, Sattler A, Stervbo U, Rödelsperger C, Nickel P, Neumann AU, Robinson PN, Mundlos S, Volk HD, Thiel A, Reinke P, Babel N.

Am J Transplant. 2013 Nov;13(11):2842-54. doi: 10.1111/ajt.12431. Epub 2013 Sep 10.

10.

Swiftly computing center strings.

Hufsky F, Kuchenbecker L, Jahn K, Stoye J, Böcker S.

BMC Bioinformatics. 2011 Apr 19;12:106. doi: 10.1186/1471-2105-12-106.

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