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Items: 1 to 50 of 126

1.

Structural conservation in a membrane-enveloped filamentous virus infecting a hyperthermophilic acidophile.

Liu Y, Osinski T, Wang F, Krupovic M, Schouten S, Kasson P, Prangishvili D, Egelman EH.

Nat Commun. 2018 Aug 22;9(1):3360. doi: 10.1038/s41467-018-05684-6.

2.

ICTV Virus Taxonomy Profile: Globuloviridae.

Prangishvili D, Krupovic M, Ictv Report Consortium.

J Gen Virol. 2018 Aug 9. doi: 10.1099/jgv.0.001123. [Epub ahead of print]

PMID:
30091697
3.

The depths of virus exaptation.

Koonin EV, Krupovic M.

Curr Opin Virol. 2018 Jul 30;31:1-8. doi: 10.1016/j.coviro.2018.07.011. [Epub ahead of print] Review.

PMID:
30071360
4.

Correction to: Smacoviridae: a new family of animal-associated single-stranded DNA viruses.

Varsani A, Krupovic M.

Arch Virol. 2018 Jul 27. doi: 10.1007/s00705-018-3960-1. [Epub ahead of print]

PMID:
30054745
5.

ICTV Virus Taxonomy Profile: Bicaudaviridae.

Prangishvili D, Krupovic M, Ictv Report Consortium.

J Gen Virol. 2018 Jul;99(7):864-865. doi: 10.1099/jgv.0.001106. Epub 2018 Jun 7.

PMID:
29877786
6.

Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2018).

King AMQ, Lefkowitz EJ, Mushegian AR, Adams MJ, Dutilh BE, Gorbalenya AE, Harrach B, Harrison RL, Junglen S, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Nibert ML, Rubino L, Sabanadzovic S, Sanfaçon H, Siddell SG, Simmonds P, Varsani A, Zerbini FM, Davison AJ.

Arch Virol. 2018 May 12. doi: 10.1007/s00705-018-3847-1. [Epub ahead of print]

PMID:
29754305
7.

Taxonomy of the family Arenaviridae and the order Bunyavirales: update 2018.

Maes P, Alkhovsky SV, Bào Y, Beer M, Birkhead M, Briese T, Buchmeier MJ, Calisher CH, Charrel RN, Choi IR, Clegg CS, de la Torre JC, Delwart E, DeRisi JL, Di Bello PL, Di Serio F, Digiaro M, Dolja VV, Drosten C, Druciarek TZ, Du J, Ebihara H, Elbeaino T, Gergerich RC, Gillis AN, Gonzalez JJ, Haenni AL, Hepojoki J, Hetzel U, Hồ T, Hóng N, Jain RK, Jansen van Vuren P, Jin Q, Jonson MG, Junglen S, Keller KE, Kemp A, Kipar A, Kondov NO, Koonin EV, Kormelink R, Korzyukov Y, Krupovic M, Lambert AJ, Laney AG, LeBreton M, Lukashevich IS, Marklewitz M, Markotter W, Martelli GP, Martin RR, Mielke-Ehret N, Mühlbach HP, Navarro B, Ng TFF, Nunes MRT, Palacios G, Pawęska JT, Peters CJ, Plyusnin A, Radoshitzky SR, Romanowski V, Salmenperä P, Salvato MS, Sanfaçon H, Sasaya T, Schmaljohn C, Schneider BS, Shirako Y, Siddell S, Sironen TA, Stenglein MD, Storm N, Sudini H, Tesh RB, Tzanetakis IE, Uppala M, Vapalahti O, Vasilakis N, Walker PJ, Wáng G, Wáng L, Wáng Y, Wèi T, Wiley MR, Wolf YI, Wolfe ND, Wú Z, Xú W, Yang L, Yāng Z, Yeh SD, Zhāng YZ, Zhèng Y, Zhou X, Zhū C, Zirkel F, Kuhn JH.

Arch Virol. 2018 Aug;163(8):2295-2310. doi: 10.1007/s00705-018-3843-5. Epub 2018 Apr 21.

PMID:
29680923
8.

Pervasive Chimerism in the Replication-Associated Proteins of Uncultured Single-Stranded DNA Viruses.

Kazlauskas D, Varsani A, Krupovic M.

Viruses. 2018 Apr 10;10(4). pii: E187. doi: 10.3390/v10040187.

9.

Taxonomy of the order Mononegavirales: update 2018.

Amarasinghe GK, Aréchiga Ceballos NG, Banyard AC, Basler CF, Bavari S, Bennett AJ, Blasdell KR, Briese T, Bukreyev A, Caì Y, Calisher CH, Campos Lawson C, Chandran K, Chapman CA, Chiu CY, Choi KS, Collins PL, Dietzgen RG, Dolja VV, Dolnik O, Domier LL, Dürrwald R, Dye JM, Easton AJ, Ebihara H, Echevarría JE, Fooks AR, Formenty PBH, Fouchier RAM, Freuling CM, Ghedin E, Goldberg TL, Hewson R, Horie M, Hyndman TH, Jiāng D, Kityo R, Kobinger GP, Kondō H, Koonin EV, Krupovic M, Kurath G, Lamb RA, Lee B, Leroy EM, Maes P, Maisner A, Marston DA, Mor SK, Müller T, Mühlberger E, Ramírez VMN, Netesov SV, Ng TFF, Nowotny N, Palacios G, Patterson JL, Pawęska JT, Payne SL, Prieto K, Rima BK, Rota P, Rubbenstroth D, Schwemmle M, Siddell S, Smither SJ, Song Q, Song T, Stenglein MD, Stone DM, Takada A, Tesh RB, Thomazelli LM, Tomonaga K, Tordo N, Towner JS, Vasilakis N, Vázquez-Morón S, Verdugo C, Volchkov VE, Wahl V, Walker PJ, Wang D, Wang LF, Wellehan JFX, Wiley MR, Whitfield AE, Wolf YI, Yè G, Zhāng YZ, Kuhn JH.

Arch Virol. 2018 Aug;163(8):2283-2294. doi: 10.1007/s00705-018-3814-x. Epub 2018 Apr 11.

PMID:
29637429
10.

Vast diversity of prokaryotic virus genomes encoding double jelly-roll major capsid proteins uncovered by genomic and metagenomic sequence analysis.

Yutin N, Bäckström D, Ettema TJG, Krupovic M, Koonin EV.

Virol J. 2018 Apr 10;15(1):67. doi: 10.1186/s12985-018-0974-y.

11.

Ortervirales: New Virus Order Unifying Five Families of Reverse-Transcribing Viruses.

Krupovic M, Blomberg J, Coffin JM, Dasgupta I, Fan H, Geering AD, Gifford R, Harrach B, Hull R, Johnson W, Kreuze JF, Lindemann D, Llorens C, Lockhart B, Mayer J, Muller E, Olszewski NE, Pappu HR, Pooggin MM, Richert-Pöggeler KR, Sabanadzovic S, Sanfaçon H, Schoelz JE, Seal S, Stavolone L, Stoye JP, Teycheney PY, Tristem M, Koonin EV, Kuhn JH.

J Virol. 2018 May 29;92(12). pii: e00515-18. doi: 10.1128/JVI.00515-18. Print 2018 Jun 15. No abstract available.

PMID:
29618642
12.

ICTV Virus Taxonomy Profile: Plasmaviridae.

Krupovic M, Ictv Report Consortium.

J Gen Virol. 2018 May;99(5):617-618. doi: 10.1099/jgv.0.001060. Epub 2018 Apr 3.

PMID:
29611799
13.

Smacoviridae: a new family of animal-associated single-stranded DNA viruses.

Varsani A, Krupovic M.

Arch Virol. 2018 Jul;163(7):2005-2015. doi: 10.1007/s00705-018-3820-z. Epub 2018 Mar 23. Erratum in: Arch Virol. 2018 Jul 27;:.

PMID:
29572596
14.

ICTV Virus Taxonomy Profile: Guttaviridae.

Prangishvili D, Mochizuki T, Krupovic M, Ictv Report Consortium.

J Gen Virol. 2018 Mar;99(3):290-291. doi: 10.1099/jgv.0.001027. Epub 2018 Feb 8.

15.

ICTV Virus Taxonomy Profile: Ampullaviridae.

Prangishvili D, Krupovic M, Ictv Report Consortium.

J Gen Virol. 2018 Mar;99(3):288-289. doi: 10.1099/jgv.0.001023. Epub 2018 Feb 8.

16.

Rolling-circle replication initiation protein of haloarchaeal sphaerolipovirus SNJ1 is homologous to bacterial transposases of the IS91 family insertion sequences.

Wang Y, Chen B, Cao M, Sima L, Prangishvili D, Chen X, Krupovic M.

J Gen Virol. 2018 Jan 18. doi: 10.1099/jgv.0.001009. [Epub ahead of print]

PMID:
29458508
17.

Candidatus Nitrosocaldus cavascurensis, an Ammonia Oxidizing, Extremely Thermophilic Archaeon with a Highly Mobile Genome.

Abby SS, Melcher M, Kerou M, Krupovic M, Stieglmeier M, Rossel C, Pfeifer K, Schleper C.

Front Microbiol. 2018 Jan 26;9:28. doi: 10.3389/fmicb.2018.00028. eCollection 2018.

18.

A novel family of tyrosine integrases encoded by the temperate pleolipovirus SNJ2.

Wang J, Liu Y, Liu Y, Du K, Xu S, Wang Y, Krupovic M, Chen X.

Nucleic Acids Res. 2018 Mar 16;46(5):2521-2536. doi: 10.1093/nar/gky005.

19.

History of CRISPR-Cas from Encounter with a Mysterious Repeated Sequence to Genome Editing Technology.

Ishino Y, Krupovic M, Forterre P.

J Bacteriol. 2018 Mar 12;200(7). pii: e00580-17. doi: 10.1128/JB.00580-17. Print 2018 Apr 1. Review.

20.

Taxonomy of prokaryotic viruses: 2017 update from the ICTV Bacterial and Archaeal Viruses Subcommittee.

Adriaenssens EM, Wittmann J, Kuhn JH, Turner D, Sullivan MB, Dutilh BE, Jang HB, van Zyl LJ, Klumpp J, Lobocka M, Moreno Switt AI, Rumnieks J, Edwards RA, Uchiyama J, Alfenas-Zerbini P, Petty NK, Kropinski AM, Barylski J, Gillis A, Clokie MRC, Prangishvili D, Lavigne R, Aziz RK, Duffy S, Krupovic M, Poranen MM, Knezevic P, Enault F, Tong Y, Oksanen HM, Rodney Brister J.

Arch Virol. 2018 Apr;163(4):1125-1129. doi: 10.1007/s00705-018-3723-z. Epub 2018 Jan 22. No abstract available.

PMID:
29356990
21.

Bacteriophage GC1, a Novel Tectivirus Infecting Gluconobacter Cerinus, an Acetic Acid Bacterium Associated with Wine-Making.

Philippe C, Krupovic M, Jaomanjaka F, Claisse O, Petrel M, le Marrec C.

Viruses. 2018 Jan 16;10(1). pii: E39. doi: 10.3390/v10010039.

22.

Novel Families of Archaeo-Eukaryotic Primases Associated with Mobile Genetic Elements of Bacteria and Archaea.

Kazlauskas D, Sezonov G, Charpin N, Venclovas Č, Forterre P, Krupovic M.

J Mol Biol. 2018 Mar 2;430(5):737-750. doi: 10.1016/j.jmb.2017.11.014. Epub 2017 Dec 11.

23.

Viruses of archaea: Structural, functional, environmental and evolutionary genomics.

Krupovic M, Cvirkaite-Krupovic V, Iranzo J, Prangishvili D, Koonin EV.

Virus Res. 2018 Jan 15;244:181-193. doi: 10.1016/j.virusres.2017.11.025. Epub 2017 Nov 22. Review.

PMID:
29175107
24.

Discovery of an expansive bacteriophage family that includes the most abundant viruses from the human gut.

Yutin N, Makarova KS, Gussow AB, Krupovic M, Segall A, Edwards RA, Koonin EV.

Nat Microbiol. 2018 Jan;3(1):38-46. doi: 10.1038/s41564-017-0053-y. Epub 2017 Nov 13.

25.

Cellular origin of the viral capsid-like bacterial microcompartments.

Krupovic M, Koonin EV.

Biol Direct. 2017 Nov 13;12(1):25. doi: 10.1186/s13062-017-0197-y.

26.

Unique architecture of thermophilic archaeal virus APBV1 and its genome packaging.

Ptchelkine D, Gillum A, Mochizuki T, Lucas-Staat S, Liu Y, Krupovic M, Phillips SEV, Prangishvili D, Huiskonen JT.

Nat Commun. 2017 Nov 10;8(1):1436. doi: 10.1038/s41467-017-01668-0.

27.

The enigmatic archaeal virosphere.

Prangishvili D, Bamford DH, Forterre P, Iranzo J, Koonin EV, Krupovic M.

Nat Rev Microbiol. 2017 Nov 10;15(12):724-739. doi: 10.1038/nrmicro.2017.125. Review.

PMID:
29123227
28.

Primer-Independent DNA Synthesis by a Family B DNA Polymerase from Self-Replicating Mobile Genetic Elements.

Redrejo-Rodríguez M, Ordóñez CD, Berjón-Otero M, Moreno-González J, Aparicio-Maldonado C, Forterre P, Salas M, Krupovic M.

Cell Rep. 2017 Nov 7;21(6):1574-1587. doi: 10.1016/j.celrep.2017.10.039.

29.
30.

Polintons, virophages and transpovirons: a tangled web linking viruses, transposons and immunity.

Koonin EV, Krupovic M.

Curr Opin Virol. 2017 Aug;25:7-15. doi: 10.1016/j.coviro.2017.06.008. Epub 2017 Jun 30. Review.

31.

Model for a novel membrane envelope in a filamentous hyperthermophilic virus.

Kasson P, DiMaio F, Yu X, Lucas-Staat S, Krupovic M, Schouten S, Prangishvili D, Egelman EH.

Elife. 2017 Jun 22;6. pii: e26268. doi: 10.7554/eLife.26268.

32.

Casposons: mobile genetic elements that gave rise to the CRISPR-Cas adaptation machinery.

Krupovic M, Béguin P, Koonin EV.

Curr Opin Microbiol. 2017 Aug;38:36-43. doi: 10.1016/j.mib.2017.04.004. Epub 2017 May 1. Review.

33.

Sequence-based taxonomic framework for the classification of uncultured single-stranded DNA viruses of the family Genomoviridae.

Varsani A, Krupovic M.

Virus Evol. 2017 Feb 2;3(1):vew037. doi: 10.1093/ve/vew037. eCollection 2017 Jan.

34.

A network perspective on the virus world.

Iranzo J, Krupovic M, Koonin EV.

Commun Integr Biol. 2017 Feb 23;10(2):e1296614. doi: 10.1080/19420889.2017.1296614. eCollection 2017.

35.

Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2017).

Adams MJ, Lefkowitz EJ, King AMQ, Harrach B, Harrison RL, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Mushegian AR, Nibert M, Sabanadzovic S, Sanfaçon H, Siddell SG, Simmonds P, Varsani A, Zerbini FM, Gorbalenya AE, Davison AJ.

Arch Virol. 2017 Aug;162(8):2505-2538. doi: 10.1007/s00705-017-3358-5. Epub 2017 Apr 22.

PMID:
28434098
36.

A Novel Type of Polyhedral Viruses Infecting Hyperthermophilic Archaea.

Liu Y, Ishino S, Ishino Y, Pehau-Arnaudet G, Krupovic M, Prangishvili D.

J Virol. 2017 Jun 9;91(13). pii: e00589-17. doi: 10.1128/JVI.00589-17. Print 2017 Jul 1.

37.

Homologous Capsid Proteins Testify to the Common Ancestry of Retroviruses, Caulimoviruses, Pseudoviruses, and Metaviruses.

Krupovic M, Koonin EV.

J Virol. 2017 May 26;91(12). pii: e00210-17. doi: 10.1128/JVI.00210-17. Print 2017 Jun 15. No abstract available.

38.

Multiple origins of viral capsid proteins from cellular ancestors.

Krupovic M, Koonin EV.

Proc Natl Acad Sci U S A. 2017 Mar 21;114(12):E2401-E2410. doi: 10.1073/pnas.1621061114. Epub 2017 Mar 6.

39.

Evolutionary history of ssDNA bacilladnaviruses features horizontal acquisition of the capsid gene from ssRNA nodaviruses.

Kazlauskas D, Dayaram A, Kraberger S, Goldstien S, Varsani A, Krupovic M.

Virology. 2017 Apr;504:114-121. doi: 10.1016/j.virol.2017.02.001. Epub 2017 Feb 10.

40.

Consensus statement: Virus taxonomy in the age of metagenomics.

Simmonds P, Adams MJ, Benkő M, Breitbart M, Brister JR, Carstens EB, Davison AJ, Delwart E, Gorbalenya AE, Harrach B, Hull R, King AM, Koonin EV, Krupovic M, Kuhn JH, Lefkowitz EJ, Nibert ML, Orton R, Roossinck MJ, Sabanadzovic S, Sullivan MB, Suttle CA, Tesh RB, van der Vlugt RA, Varsani A, Zerbini FM.

Nat Rev Microbiol. 2017 Mar;15(3):161-168. doi: 10.1038/nrmicro.2016.177. Epub 2017 Jan 3.

PMID:
28134265
41.

50 years of the International Committee on Taxonomy of Viruses: progress and prospects.

Adams MJ, Lefkowitz EJ, King AM, Harrach B, Harrison RL, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Mushegian AR, Nibert ML, Sabanadzovic S, Sanfaçon H, Siddell SG, Simmonds P, Varsani A, Zerbini FM, Orton RJ, Smith DB, Gorbalenya AE, Davison AJ.

Arch Virol. 2017 May;162(5):1441-1446. doi: 10.1007/s00705-016-3215-y. Epub 2017 Jan 11.

PMID:
28078475
42.

Taxonomy of prokaryotic viruses: 2016 update from the ICTV bacterial and archaeal viruses subcommittee.

Adriaenssens EM, Krupovic M, Knezevic P, Ackermann HW, Barylski J, Brister JR, Clokie MR, Duffy S, Dutilh BE, Edwards RA, Enault F, Jang HB, Klumpp J, Kropinski AM, Lavigne R, Poranen MM, Prangishvili D, Rumnieks J, Sullivan MB, Wittmann J, Oksanen HM, Gillis A, Kuhn JH.

Arch Virol. 2017 Apr;162(4):1153-1157. doi: 10.1007/s00705-016-3173-4. Epub 2016 Dec 31. No abstract available.

PMID:
28040838
43.

Virology: A parasite's parasite saves host's neighbours.

Koonin EV, Krupovic M.

Nature. 2016 Dec 7;540(7632):204-205. doi: 10.1038/540204a. No abstract available.

PMID:
27929010
44.

Abundant Lysine Methylation and N-Terminal Acetylation in Sulfolobus islandicus Revealed by Bottom-Up and Top-Down Proteomics.

Vorontsov EA, Rensen E, Prangishvili D, Krupovic M, Chamot-Rooke J.

Mol Cell Proteomics. 2016 Nov;15(11):3388-3404. Epub 2016 Aug 23.

45.

Possibility and Challenges of Conversion of Current Virus Species Names to Linnaean Binomials.

Postler TS, Clawson AN, Amarasinghe GK, Basler CF, Bavari S, Benko M, Blasdell KR, Briese T, Buchmeier MJ, Bukreyev A, Calisher CH, Chandran K, Charrel R, Clegg CS, Collins PL, Juan Carlos T, Derisi JL, Dietzgen RG, Dolnik O, Dürrwald R, Dye JM, Easton AJ, Emonet S, Formenty P, Fouchier RAM, Ghedin E, Gonzalez JP, Harrach B, Hewson R, Horie M, Jiang D, Kobinger G, Kondo H, Kropinski AM, Krupovic M, Kurath G, Lamb RA, Leroy EM, Lukashevich IS, Maisner A, Mushegian AR, Netesov SV, Nowotny N, Patterson JL, Payne SL, PaWeska JT, Peters CJ, Radoshitzky SR, Rima BK, Romanowski V, Rubbenstroth D, Sabanadzovic S, Sanfaçon H, Salvato MS, Schwemmle M, Smither SJ, Stenglein MD, Stone DM, Takada A, Tesh RB, Tomonaga K, Tordo N, Towner JS, Vasilakis N, Volchkov VE, Wahl-Jensen V, Walker PJ, Wang LF, Varsani A, Whitfield AE, Zerbini FM, Kuhn JH.

Syst Biol. 2017 May 1;66(3):463-473. doi: 10.1093/sysbio/syw096.

46.

Virus-mediated archaeal hecatomb in the deep seafloor.

Danovaro R, Dell'Anno A, Corinaldesi C, Rastelli E, Cavicchioli R, Krupovic M, Noble RT, Nunoura T, Prangishvili D.

Sci Adv. 2016 Oct 12;2(10):e1600492. eCollection 2016 Oct.

47.

Diversity and comparative genomics of chimeric viruses in Sphagnum-dominated peatlands.

Quaiser A, Krupovic M, Dufresne A, Francez AJ, Roux S.

Virus Evol. 2016 Oct 3;2(2):vew025. doi: 10.1093/ve/vew025. eCollection 2016 Jul.

48.

Bipartite Network Analysis of the Archaeal Virosphere: Evolutionary Connections between Viruses and Capsidless Mobile Elements.

Iranzo J, Koonin EV, Prangishvili D, Krupovic M.

J Virol. 2016 Nov 28;90(24):11043-11055. Print 2016 Dec 15.

49.

Casposon integration shows strong target site preference and recapitulates protospacer integration by CRISPR-Cas systems.

Béguin P, Charpin N, Koonin EV, Forterre P, Krupovic M.

Nucleic Acids Res. 2016 Dec 1;44(21):10367-10376. Epub 2016 Sep 20.

50.

Eukaryotic-Like Virus Budding in Archaea.

Quemin ER, Chlanda P, Sachse M, Forterre P, Prangishvili D, Krupovic M.

MBio. 2016 Sep 13;7(5). pii: e01439-16. doi: 10.1128/mBio.01439-16.

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