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Genomic prediction of maize yield across European environmental conditions.

Millet EJ, Kruijer W, Coupel-Ledru A, Alvarez Prado S, Cabrera-Bosquet L, Lacube S, Charcosset A, Welcker C, van Eeuwijk F, Tardieu F.

Nat Genet. 2019 Jun;51(6):952-956. doi: 10.1038/s41588-019-0414-y. Epub 2019 May 20.


Modelling strategies for assessing and increasing the effectiveness of new phenotyping techniques in plant breeding.

van Eeuwijk FA, Bustos-Korts D, Millet EJ, Boer MP, Kruijer W, Thompson A, Malosetti M, Iwata H, Quiroz R, Kuppe C, Muller O, Blazakis KN, Yu K, Tardieu F, Chapman SC.

Plant Sci. 2019 May;282:23-39. doi: 10.1016/j.plantsci.2018.06.018. Epub 2018 Jun 30.


Assessment of heterosis in two Arabidopsis thaliana common-reference mapping populations.

van Hulten MHA, Paulo MJ, Kruijer W, Blankestijn-De Vries H, Kemperman B, Becker FFM, Yang J, Lauss K, Stam ME, van Eeuwijk FA, Keurentjes JJB.

PLoS One. 2018 Oct 12;13(10):e0205564. doi: 10.1371/journal.pone.0205564. eCollection 2018.


Natural variation of YELLOW SEEDLING1 affects photosynthetic acclimation of Arabidopsis thaliana.

van Rooijen R, Kruijer W, Boesten R, van Eeuwijk FA, Harbinson J, Aarts MGM.

Nat Commun. 2017 Nov 10;8(1):1421. doi: 10.1038/s41467-017-01576-3.


SIEVE ELEMENT-LINING CHAPERONE1 Restricts Aphid Feeding on Arabidopsis during Heat Stress.

Kloth KJ, Busscher-Lange J, Wiegers GL, Kruijer W, Buijs G, Meyer RC, Albrectsen BR, Bouwmeester HJ, Dicke M, Jongsma MA.

Plant Cell. 2017 Oct;29(10):2450-2464. doi: 10.1105/tpc.16.00424. Epub 2017 Sep 28.


Natural variation in Arabidopsis thaliana reveals shoot ionome, biomass, and gene expression changes as biomarkers for zinc deficiency tolerance.

Campos ACAL, Kruijer W, Alexander R, Akkers RC, Danku J, Salt DE, Aarts MGM.

J Exp Bot. 2017 Jun 15;68(13):3643-3656. doi: 10.1093/jxb/erx191.


Genetic architecture of plant stress resistance: multi-trait genome-wide association mapping.

Thoen MP, Davila Olivas NH, Kloth KJ, Coolen S, Huang PP, Aarts MG, Bac-Molenaar JA, Bakker J, Bouwmeester HJ, Broekgaarden C, Bucher J, Busscher-Lange J, Cheng X, Fradin EF, Jongsma MA, Julkowska MM, Keurentjes JJ, Ligterink W, Pieterse CM, Ruyter-Spira C, Smant G, Testerink C, Usadel B, van Loon JJ, van Pelt JA, van Schaik CC, van Wees SC, Visser RG, Voorrips R, Vosman B, Vreugdenhil D, Warmerdam S, Wiegers GL, van Heerwaarden J, Kruijer W, van Eeuwijk FA, Dicke M.

New Phytol. 2017 Feb;213(3):1346-1362. doi: 10.1111/nph.14220. Epub 2016 Oct 4.


Genome-wide association analysis reveals distinct genetic architectures for single and combined stress responses in Arabidopsis thaliana.

Davila Olivas NH, Kruijer W, Gort G, Wijnen CL, van Loon JJ, Dicke M.

New Phytol. 2017 Jan;213(2):838-851. doi: 10.1111/nph.14165. Epub 2016 Sep 8.


Genome-Wide Analysis of Yield in Europe: Allelic Effects Vary with Drought and Heat Scenarios.

Millet EJ, Welcker C, Kruijer W, Negro S, Coupel-Ledru A, Nicolas SD, Laborde J, Bauland C, Praud S, Ranc N, Presterl T, Tuberosa R, Bedo Z, Draye X, Usadel B, Charcosset A, Van Eeuwijk F, Tardieu F.

Plant Physiol. 2016 Oct;172(2):749-764. Epub 2016 Jul 19.


AtWRKY22 promotes susceptibility to aphids and modulates salicylic acid and jasmonic acid signalling.

Kloth KJ, Wiegers GL, Busscher-Lange J, van Haarst JC, Kruijer W, Bouwmeester HJ, Dicke M, Jongsma MA.

J Exp Bot. 2016 May;67(11):3383-96. doi: 10.1093/jxb/erw159. Epub 2016 Apr 23.


Phenomics for photosynthesis, growth and reflectance in Arabidopsis thaliana reveals circadian and long-term fluctuations in heritability.

Flood PJ, Kruijer W, Schnabel SK, van der Schoor R, Jalink H, Snel JF, Harbinson J, Aarts MG.

Plant Methods. 2016 Feb 15;12:14. doi: 10.1186/s13007-016-0113-y. eCollection 2016.


Genome-Wide Association Mapping and Genomic Prediction Elucidate the Genetic Architecture of Morphological Traits in Arabidopsis.

Kooke R, Kruijer W, Bours R, Becker F, Kuhn A, van de Geest H, Buntjer J, Doeswijk T, Guerra J, Bouwmeester H, Vreugdenhil D, Keurentjes JJ.

Plant Physiol. 2016 Apr;170(4):2187-203. doi: 10.1104/pp.15.00997. Epub 2016 Feb 11.


Novel Genes Affecting the Interaction between the Cabbage Whitefly and Arabidopsis Uncovered by Genome-Wide Association Mapping.

Broekgaarden C, Bucher J, Bac-Molenaar J, Keurentjes JJ, Kruijer W, Voorrips RE, Vosman B.

PLoS One. 2015 Dec 23;10(12):e0145124. doi: 10.1371/journal.pone.0145124. eCollection 2015.


Misspecification in Mixed-Model-Based Association Analysis.

Kruijer W.

Genetics. 2016 Jan;202(1):363-6. doi: 10.1534/genetics.115.177212. Epub 2015 Nov 19.


Genome-Wide Association Analysis of Adaptation Using Environmentally Predicted Traits.

van Heerwaarden J, van Zanten M, Kruijer W.

PLoS Genet. 2015 Oct 23;11(10):e1005594. doi: 10.1371/journal.pgen.1005594. eCollection 2015 Oct.


Genotype-phenotype modeling considering intermediate level of biological variation: a case study involving sensory traits, metabolites and QTLs in ripe tomatoes.

Wang H, Paulo J, Kruijer W, Boer M, Jansen H, Tikunov Y, Usadel B, van Heusden S, Bovy A, van Eeuwijk F.

Mol Biosyst. 2015 Nov;11(11):3101-10. doi: 10.1039/c5mb00477b. Epub 2015 Sep 7.


Marker-based estimation of heritability in immortal populations.

Kruijer W, Boer MP, Malosetti M, Flood PJ, Engel B, Kooke R, Keurentjes JJ, van Eeuwijk FA.

Genetics. 2015 Feb;199(2):379-98. doi: 10.1534/genetics.114.167916. Epub 2014 Dec 19. Erratum in: Genetics. 2015 May;200(1):385.


Quantitative trait loci and candidate genes underlying genotype by environment interaction in the response of Arabidopsis thaliana to drought.

El-Soda M, Kruijer W, Malosetti M, Koornneef M, Aarts MG.

Plant Cell Environ. 2015 Mar;38(3):585-99. doi: 10.1111/pce.12418. Epub 2014 Sep 3.


High throughput screening with chlorophyll fluorescence imaging and its use in crop improvement.

Harbinson J, Prinzenberg AE, Kruijer W, Aarts MG.

Curr Opin Biotechnol. 2012 Apr;23(2):221-6. doi: 10.1016/j.copbio.2011.10.006. Epub 2011 Nov 4. Review.


Gene transfer and protein dynamics in stem cells using single cell electroporation in a microfluidic device.

Valero A, Post JN, van Nieuwkasteele JW, Ter Braak PM, Kruijer W, van den Berg A.

Lab Chip. 2008 Jan;8(1):62-7. Epub 2007 Nov 26.


Collagen scaffolds for hematopoietic progenitor cell expansion and controlled differentiation.

Siebum B, Grijpma DW, Poot AA, Vermes I, Kruijer W, Feijen J.

J Control Release. 2005 Jan 3;101(1-3):338-40. No abstract available.


Proteolytic degradation of Smad4 in extracts of AML blasts.

Wierenga AT, Eggen BJ, Kruijer W, Vellenga E.

Leuk Res. 2002 Dec;26(12):1105-11.


Interleukin-22 (IL-22) activates the JAK/STAT, ERK, JNK, and p38 MAP kinase pathways in a rat hepatoma cell line. Pathways that are shared with and distinct from IL-10.

Lejeune D, Dumoutier L, Constantinescu S, Kruijer W, Schuringa JJ, Renauld JC.

J Biol Chem. 2002 Sep 13;277(37):33676-82. Epub 2002 Jun 26.


LIF-induced STAT3 signaling in murine versus human embryonal carcinoma (EC) cells.

Schuringa JJ, van der Schaaf S, Vellenga E, Eggen BJ, Kruijer W.

Exp Cell Res. 2002 Mar 10;274(1):119-29.


Regulation of constitutive STAT5 phosphorylation in acute myeloid leukemia blasts.

Birkenkamp KU, Geugien M, Lemmink HH, Kruijer W, Vellenga E.

Leukemia. 2001 Dec;15(12):1923-31.


TAK1 activation of the mouse JunB promoter is mediated through a CCAAT box and NF-Y.

Eggen BJ, Benus GF, Folkertsma S, Jonk LJ, Kruijer W.

FEBS Lett. 2001 Oct 12;506(3):267-71.


MEN2A-RET-induced cellular transformation by activation of STAT3.

Schuringa JJ, Wojtachnio K, Hagens W, Vellenga E, Buys CH, Hofstra R, Kruijer W.

Oncogene. 2001 Aug 30;20(38):5350-8.


c-Jun and c-Fos cooperate with STAT3 in IL-6-induced transactivation of the IL-6 respone element (IRE).

Schuringa JJ, Timmer H, Luttickhuizen D, Vellenga E, Kruijer W.

Cytokine. 2001 Apr 21;14(2):78-87.


Ser727-dependent transcriptional activation by association of p300 with STAT3 upon IL-6 stimulation.

Schuringa JJ, Schepers H, Vellenga E, Kruijer W.

FEBS Lett. 2001 Apr 20;495(1-2):71-6.


The p38 MAP kinase inhibitor SB203580 enhances nuclear factor-kappa B transcriptional activity by a non-specific effect upon the ERK pathway.

Birkenkamp KU, Tuyt LM, Lummen C, Wierenga AT, Kruijer W, Vellenga E.

Br J Pharmacol. 2000 Sep;131(1):99-107.


The retinoid X receptor response element in the human aldehyde dehydrogenase 2 promoter is antagonized by the chicken ovalbumin upstream promoter family of orphan receptors.

Pinaire J, Hasanadka R, Fang M, Chou WY, Stewart MJ, Kruijer W, Crabb D.

Arch Biochem Biophys. 2000 Aug 1;380(1):192-200.


Growth factor signalling.

de Laat SW, Boonstra J, Defize LH, Kruijer W, van der Saag PT, Tertoolen LG, van Zoelen EJ, den Hertog J.

Int J Dev Biol. 1999;43(7):681-91. Review.


A dual function for p38 MAP kinase in hematopoietic cells: involvement in apoptosis and cell activation.

Birkenkamp KU, Dokter WH, Esselink MT, Jonk LJ, Kruijer W, Vellenga E.

Leukemia. 1999 Jul;13(7):1037-45.


Extracellular-regulated kinase 1/2, Jun N-terminal kinase, and c-Jun are involved in NF-kappa B-dependent IL-6 expression in human monocytes.

Tuyt LM, Dokter WH, Birkenkamp K, Koopmans SB, Lummen C, Kruijer W, Vellenga E.

J Immunol. 1999 Apr 15;162(8):4893-902.


Insulin activates Stat3 independently of p21ras-ERK and PI-3K signal transduction.

Coffer PJ, van Puijenbroek A, Burgering BM, Klop-de Jonge M, Koenderman L, Bos JL, Kruijer W.

Oncogene. 1997 Nov 20;15(21):2529-39.


Anomalies of the CD8+ T cell pool in haemochromatosis: HLA-A3-linked expansions of CD8+CD28- T cells.

Arosa FA, Oliveira L, Porto G, da Silva BM, Kruijer W, Veltman J, de Sousa M.

Clin Exp Immunol. 1997 Mar;107(3):548-54.


Regulation of the zebrafish goosecoid promoter by mesoderm inducing factors and Xwnt1.

Joore J, Fasciana C, Speksnijder JE, Kruijer W, Destrée OH, van den Eijnden-van Raaij AJ, de Laat SW, Zivkovic D.

Mech Dev. 1996 Mar;55(1):3-18.


UV activation of receptor tyrosine kinase activity.

Coffer PJ, Burgering BM, Peppelenbosch MP, Bos JL, Kruijer W.

Oncogene. 1995 Aug 3;11(3):561-9.


EGF receptor deletions define a region specifically mediating STAT transcription factor activation.

Coffer PJ, Kruijer W.

Biochem Biophys Res Commun. 1995 May 5;210(1):74-81.


Localization of transcripts of the related nuclear orphan receptors COUP-TF I and ARP-1 in the adult mouse brain.

Lopes da Silva S, Cox JJ, Jonk LJ, Kruijer W, Burbach JP.

Brain Res Mol Brain Res. 1995 May;30(1):131-6.


Transcriptional regulation of the junB promoter: analysis of STAT-mediated signal transduction.

Coffer P, Lutticken C, van Puijenbroek A, Klop-de Jonge M, Horn F, Kruijer W.

Oncogene. 1995 Mar 2;10(5):985-94.


Stimulation of receptor protein-tyrosine phosphatase alpha activity and phosphorylation by phorbol ester.

den Hertog J, Sap J, Pals CE, Schlessinger J, Kruijer W.

Cell Growth Differ. 1995 Mar;6(3):303-7.


Interleukin-6-induced serine phosphorylation of transcription factor APRF: evidence for a role in interleukin-6 target gene induction.

Lütticken C, Coffer P, Yuan J, Schwartz C, Caldenhoven E, Schindler C, Kruijer W, Heinrich PC, Horn F.

FEBS Lett. 1995 Feb 27;360(2):137-43.

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