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Changes in discourse structure over time following traumatic brain injury.

Lindsey A, Mozeiko J, Krueger F, Grafman J, Coelho C.

Neuropsychologia. 2018 Sep 1;119:308-319. doi: 10.1016/j.neuropsychologia.2018.08.030. [Epub ahead of print]


Real-time fMRI amygdala neurofeedback positive emotional training normalized resting-state functional connectivity in combat veterans with and without PTSD: a connectome-wide investigation.

Misaki M, Phillips R, Zotev V, Wong CK, Wurfel BE, Krueger F, Feldner M, Bodurka J.

Neuroimage Clin. 2018 Aug 19;20:543-555. doi: 10.1016/j.nicl.2018.08.025. eCollection 2018.


Tracking resting state connectivity dynamics in veterans with PTSD.

Yuan H, Phillips R, Wong CK, Zotev V, Misaki M, Wurfel B, Krueger F, Feldner M, Bodurka J.

Neuroimage Clin. 2018 Apr 21;19:260-270. doi: 10.1016/j.nicl.2018.04.014. eCollection 2018.


Real-time fMRI neurofeedback training of the amygdala activity with simultaneous EEG in veterans with combat-related PTSD.

Zotev V, Phillips R, Misaki M, Wong CK, Wurfel BE, Krueger F, Feldner M, Bodurka J.

Neuroimage Clin. 2018 Apr 8;19:106-121. doi: 10.1016/j.nicl.2018.04.010. eCollection 2018.


Anterior insula lesions and alexithymia reduce the endorsements of everyday altruistic attitudes.

Chau A, Zhong W, Gordon B, Krueger F, Grafman J.

Neuropsychologia. 2018 Aug;117:428-439. doi: 10.1016/j.neuropsychologia.2018.07.002. Epub 2018 Jul 3.


Genome-Scale Oscillations in DNA Methylation during Exit from Pluripotency.

Rulands S, Lee HJ, Clark SJ, Angermueller C, Smallwood SA, Krueger F, Mohammed H, Dean W, Nichols J, Rugg-Gunn P, Kelsey G, Stegle O, Simons BD, Reik W.

Cell Syst. 2018 Jul 25;7(1):63-76.e12. doi: 10.1016/j.cels.2018.06.012.


The role of the anterior insula in social norm compliance and enforcement: Evidence from coordinate-based and functional connectivity meta-analyses.

Bellucci G, Feng C, Camilleri J, Eickhoff SB, Krueger F.

Neurosci Biobehav Rev. 2018 Sep;92:378-389. doi: 10.1016/j.neubiorev.2018.06.024. Epub 2018 Jun 26. Review.


Resting-State Functional Connectivity Underlying Costly Punishment: A Machine-Learning Approach.

Feng C, Zhu Z, Gu R, Wu X, Luo YJ, Krueger F.

Neuroscience. 2018 Aug 10;385:25-37. doi: 10.1016/j.neuroscience.2018.05.052. Epub 2018 Jun 8.


Differential roles of polar orbital prefrontal cortex and parietal lobes in logical reasoning with neutral and negative emotional content.

Eimontaite I, Goel V, Raymont V, Krueger F, Schindler I, Grafman J.

Neuropsychologia. 2018 May 14;119:320-329. doi: 10.1016/j.neuropsychologia.2018.05.014. [Epub ahead of print]


Unbiased quantification of immunoglobulin diversity at the DNA level with VDJ-seq.

Chovanec P, Bolland DJ, Matheson LS, Wood AL, Krueger F, Andrews S, Corcoran AE.

Nat Protoc. 2018 Jun;13(6):1232-1252. doi: 10.1038/nprot.2018.021. Epub 2018 May 3.


Altruistic decisions following penetrating traumatic brain injury.

Moll J, de Oliveira-Souza R, Basilio R, Bramati IE, Gordon B, Rodríguez-Nieto G, Zahn R, Krueger F, Grafman J.

Brain. 2018 May 1;141(5):1558-1569. doi: 10.1093/brain/awy064.


Comparison of whole-genome bisulfite sequencing library preparation strategies identifies sources of biases affecting DNA methylation data.

Olova N, Krueger F, Andrews S, Oxley D, Berrens RV, Branco MR, Reik W.

Genome Biol. 2018 Mar 15;19(1):33. doi: 10.1186/s13059-018-1408-2.


Connectome-wide investigation of altered resting-state functional connectivity in war veterans with and without posttraumatic stress disorder.

Misaki M, Phillips R, Zotev V, Wong CK, Wurfel BE, Krueger F, Feldner M, Bodurka J.

Neuroimage Clin. 2017 Oct 31;17:285-296. doi: 10.1016/j.nicl.2017.10.032. eCollection 2018.


scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells.

Clark SJ, Argelaguet R, Kapourani CA, Stubbs TM, Lee HJ, Alda-Catalinas C, Krueger F, Sanguinetti G, Kelsey G, Marioni JC, Stegle O, Reik W.

Nat Commun. 2018 Feb 22;9(1):781. doi: 10.1038/s41467-018-03149-4.


Language and alexithymia: Evidence for the role of the inferior frontal gyrus in acquired alexithymia.

Hobson H, Hogeveen J, Brewer R, Catmur C, Gordon B, Krueger F, Chau A, Bird G, Grafman J.

Neuropsychologia. 2018 Mar;111:229-240. doi: 10.1016/j.neuropsychologia.2017.12.037. Epub 2018 Jan 31.


Multiplexing for Oxidative Bisulfite Sequencing (oxBS-seq).

Kirschner K, Krueger F, Green AR, Chandra T.

Methods Mol Biol. 2018;1708:665-678. doi: 10.1007/978-1-4939-7481-8_34.


Local Chromatin Features Including PU.1 and IKAROS Binding and H3K4 Methylation Shape the Repertoire of Immunoglobulin Kappa Genes Chosen for V(D)J Recombination.

Matheson LS, Bolland DJ, Chovanec P, Krueger F, Andrews S, Koohy H, Corcoran AE.

Front Immunol. 2017 Nov 17;8:1550. doi: 10.3389/fimmu.2017.01550. eCollection 2017.


Machiavellian tendencies increase following damage to the left dorsolateral prefrontal cortex.

Cohen-Zimerman S, Chau A, Krueger F, Gordon B, Grafman J.

Neuropsychologia. 2017 Dec;107:68-75. doi: 10.1016/j.neuropsychologia.2017.11.007. Epub 2017 Nov 7.


cuRRBS: simple and robust evaluation of enzyme combinations for reduced representation approaches.

Martin-Herranz DE, Ribeiro AJM, Krueger F, Thornton JM, Reik W, Stubbs TM.

Nucleic Acids Res. 2017 Nov 16;45(20):11559-11569. doi: 10.1093/nar/gkx814.


AT1-receptor blockade attenuates outward aortic remodeling associated with diet-induced obesity in mice.

Krueger F, Kappert K, Foryst-Ludwig A, Kramer F, Clemenz M, Grzesiak A, Sommerfeld M, Paul Frese J, Greiner A, Kintscher U, Unger T, Kaschina E.

Clin Sci (Lond). 2017 Jul 13;131(15):1989-2005. doi: 10.1042/CS20170131. Print 2017 Aug 1.


Cluster Flow: A user-friendly bioinformatics workflow tool.

Ewels P, Krueger F, Käller M, Andrews S.

Version 2. F1000Res. 2016 Dec 6 [revised 2017 Jan 1];5:2824. doi: 10.12688/f1000research.10335.2. eCollection 2016.


Multi-tissue DNA methylation age predictor in mouse.

Stubbs TM, Bonder MJ, Stark AK, Krueger F; BI Ageing Clock Team, von Meyenn F, Stegle O, Reik W.

Genome Biol. 2017 Apr 11;18(1):68. doi: 10.1186/s13059-017-1203-5.


Biological and cognitive underpinnings of religious fundamentalism.

Zhong W, Cristofori I, Bulbulia J, Krueger F, Grafman J.

Neuropsychologia. 2017 Jun;100:18-25. doi: 10.1016/j.neuropsychologia.2017.04.009. Epub 2017 Apr 6.


Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism.

Hahn O, Grönke S, Stubbs TM, Ficz G, Hendrich O, Krueger F, Andrews S, Zhang Q, Wakelam MJ, Beyer A, Reik W, Partridge L.

Genome Biol. 2017 Mar 28;18(1):56. doi: 10.1186/s13059-017-1187-1.


Lesions to polar/orbital prefrontal cortex selectively impair reasoning about emotional material.

Goel V, Lam E, Smith KW, Goel A, Raymont V, Krueger F, Grafman J.

Neuropsychologia. 2017 May;99:236-245. doi: 10.1016/j.neuropsychologia.2017.03.006. Epub 2017 Mar 3.


Genome-wide base-resolution mapping of DNA methylation in single cells using single-cell bisulfite sequencing (scBS-seq).

Clark SJ, Smallwood SA, Lee HJ, Krueger F, Reik W, Kelsey G.

Nat Protoc. 2017 Mar;12(3):534-547. doi: 10.1038/nprot.2016.187. Epub 2017 Feb 9.


Gender Differences in Global but Not Targeted Demethylation in iPSC Reprogramming.

Milagre I, Stubbs TM, King MR, Spindel J, Santos F, Krueger F, Bachman M, Segonds-Pichon A, Balasubramanian S, Andrews SR, Dean W, Reik W.

Cell Rep. 2017 Jan 31;18(5):1079-1089. doi: 10.1016/j.celrep.2017.01.008.


A Little Anthropomorphism Goes a Long Way.

de Visser EJ, Monfort SS, Goodyear K, Lu L, O'Hara M, Lee MR, Parasuraman R, Krueger F.

Hum Factors. 2017 Feb;59(1):116-133. doi: 10.1177/0018720816687205.


Efficient targeted DNA methylation with chimeric dCas9-Dnmt3a-Dnmt3L methyltransferase.

Stepper P, Kungulovski G, Jurkowska RZ, Chandra T, Krueger F, Reinhardt R, Reik W, Jeltsch A, Jurkowski TP.

Nucleic Acids Res. 2017 Feb 28;45(4):1703-1713. doi: 10.1093/nar/gkw1112.


Advice Taking from Humans and Machines: An fMRI and Effective Connectivity Study.

Goodyear K, Parasuraman R, Chernyak S, Madhavan P, Deshpande G, Krueger F.

Front Hum Neurosci. 2016 Nov 4;10:542. eCollection 2016.


Mortality salience reduces the discrimination between in-group and out-group interactions: A functional MRI investigation using multi-voxel pattern analysis.

Feng C, Azarian B, Ma Y, Feng X, Wang L, Luo YJ, Krueger F.

Hum Brain Mapp. 2017 Mar;38(3):1281-1298. doi: 10.1002/hbm.23454. Epub 2016 Nov 10.


Neural signatures of trust in reciprocity: A coordinate-based meta-analysis.

Bellucci G, Chernyak SV, Goodyear K, Eickhoff SB, Krueger F.

Hum Brain Mapp. 2017 Mar;38(3):1233-1248. doi: 10.1002/hbm.23451. Epub 2016 Nov 17.


Transcriptional Activation of Pericentromeric Satellite Repeats and Disruption of Centromeric Clustering upon Proteasome Inhibition.

Natisvili T, Yandim C, Silva R, Emanuelli G, Krueger F, Nageshwaran S, Festenstein R.

PLoS One. 2016 Nov 2;11(11):e0165873. doi: 10.1371/journal.pone.0165873. eCollection 2016.


Comparative Principles of DNA Methylation Reprogramming during Human and Mouse In Vitro Primordial Germ Cell Specification.

von Meyenn F, Berrens RV, Andrews S, Santos F, Collier AJ, Krueger F, Osorno R, Dean W, Rugg-Gunn PJ, Reik W.

Dev Cell. 2016 Oct 10;39(1):104-115. doi: 10.1016/j.devcel.2016.09.015.


MERVL/Zscan4 Network Activation Results in Transient Genome-wide DNA Demethylation of mESCs.

Eckersley-Maslin MA, Svensson V, Krueger C, Stubbs TM, Giehr P, Krueger F, Miragaia RJ, Kyriakopoulos C, Berrens RV, Milagre I, Walter J, Teichmann SA, Reik W.

Cell Rep. 2016 Sep 27;17(1):179-192. doi: 10.1016/j.celrep.2016.08.087.


Networks underlying trait impulsivity: Evidence from voxel-based lesion-symptom mapping.

McDonald V, Hauner KK, Chau A, Krueger F, Grafman J.

Hum Brain Mapp. 2017 Feb;38(2):656-665. doi: 10.1002/hbm.23406. Epub 2016 Sep 26.


Paternal chronic colitis causes epigenetic inheritance of susceptibility to colitis.

Tschurtschenthaler M, Kachroo P, Heinsen FA, Adolph TE, Rühlemann MC, Klughammer J, Offner FA, Ammerpohl O, Krueger F, Smallwood S, Szymczak S, Kaser A, Franke A.

Sci Rep. 2016 Aug 19;6:31640. doi: 10.1038/srep31640.


Almost human: Anthropomorphism increases trust resilience in cognitive agents.

de Visser EJ, Monfort SS, McKendrick R, Smith MA, McKnight PE, Krueger F, Parasuraman R.

J Exp Psychol Appl. 2016 Sep;22(3):331-49. doi: 10.1037/xap0000092. Epub 2016 Aug 8.


SNPsplit: Allele-specific splitting of alignments between genomes with known SNP genotypes.

Krueger F, Andrews SR.

Version 2. F1000Res. 2016 Jun 23 [revised 2016 Jan 1];5:1479. doi: 10.12688/f1000research.9037.2. eCollection 2016.


An fMRI and effective connectivity study investigating miss errors during advice utilization from human and machine agents.

Goodyear K, Parasuraman R, Chernyak S, de Visser E, Madhavan P, Deshpande G, Krueger F.

Soc Neurosci. 2017 Oct;12(5):570-581. doi: 10.1080/17470919.2016.1205131. Epub 2016 Jul 13.


The Emerging Neuroscience of Third-Party Punishment.

Krueger F, Hoffman M.

Trends Neurosci. 2016 Aug;39(8):499-501. doi: 10.1016/j.tins.2016.06.004.


Two Mutually Exclusive Local Chromatin States Drive Efficient V(D)J Recombination.

Bolland DJ, Koohy H, Wood AL, Matheson LS, Krueger F, Stubbington MJ, Baizan-Edge A, Chovanec P, Stubbs BA, Tabbada K, Andrews SR, Spivakov M, Corcoran AE.

Cell Rep. 2016 Jun 14;15(11):2475-87. doi: 10.1016/j.celrep.2016.05.020. Epub 2016 Jun 2.


Agomelatine Improves Apathy in Frontotemporal Dementia.

Callegari I, Mattei C, Benassi F, Krueger F, Grafman J, Yaldizli Ö, Sassos D, Massucco D, Scialò C, Nobili F, Serrati C, Amore M, Cocito L, Emberti Gialloreti L, Pardini M.

Neurodegener Dis. 2016;16(5-6):352-6. doi: 10.1159/000445873. Epub 2016 May 27.


Effective connectivity of brain regions underlying third-party punishment: Functional MRI and Granger causality evidence.

Bellucci G, Chernyak S, Hoffman M, Deshpande G, Dal Monte O, Knutson KM, Grafman J, Krueger F.

Soc Neurosci. 2017 Apr;12(2):124-134. doi: 10.1080/17470919.2016.1153518. Epub 2016 Mar 10.


Brain Regions Influencing Implicit Violent Attitudes: A Lesion-Mapping Study.

Cristofori I, Zhong W, Mandoske V, Chau A, Krueger F, Strenziok M, Grafman J.

J Neurosci. 2016 Mar 2;36(9):2757-68. doi: 10.1523/JNEUROSCI.2975-15.2016.


Acquired alexithymia following damage to the anterior insula.

Hogeveen J, Bird G, Chau A, Krueger F, Grafman J.

Neuropsychologia. 2016 Feb;82:142-148. doi: 10.1016/j.neuropsychologia.2016.01.021. Epub 2016 Jan 19.


Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity.

Angermueller C, Clark SJ, Lee HJ, Macaulay IC, Teng MJ, Hu TX, Krueger F, Smallwood S, Ponting CP, Voet T, Kelsey G, Stegle O, Reik W.

Nat Methods. 2016 Mar;13(3):229-232. doi: 10.1038/nmeth.3728. Epub 2016 Jan 11.


Impaired Valuation Leads to Increased Apathy Following Ventromedial Prefrontal Cortex Damage.

Hogeveen J, Hauner KK, Chau A, Krueger F, Grafman J.

Cereb Cortex. 2017 Feb 1;27(2):1401-1408. doi: 10.1093/cercor/bhv317.


Brain Regions Associated With Internalizing and Externalizing Psychiatric Symptoms in Patients With Penetrating Traumatic Brain Injury.

Huey ED, Lee S, Lieberman JA, Devanand DP, Brickman AM, Raymont V, Krueger F, Grafman J.

J Neuropsychiatry Clin Neurosci. 2016 Spring;28(2):104-11. doi: 10.1176/appi.neuropsych.15060150. Epub 2015 Dec 30.


Effects of penetrating traumatic brain injury on event segmentation and memory.

Zacks JM, Kurby CA, Landazabal CS, Krueger F, Grafman J.

Cortex. 2016 Jan;74:233-46. doi: 10.1016/j.cortex.2015.11.002. Epub 2015 Nov 18.

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