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Items: 40

1.

Responses to Systemic Nitrogen Signaling in Arabidopsis Roots Involve trans-Zeatin in Shoots.

Poitout A, Crabos A, Petřík I, Novák O, Krouk G, Lacombe B, Ruffel S.

Plant Cell. 2018 Jun;30(6):1243-1257. doi: 10.1105/tpc.18.00011. Epub 2018 May 15.

PMID:
29764985
2.

LPCAT1 controls phosphate homeostasis in a zinc-dependent manner.

Kisko M, Bouain N, Safi A, Medici A, Akkers RC, Secco D, Fouret G, Krouk G, Aarts MG, Busch W, Rouached H.

Elife. 2018 Feb 17;7. pii: e32077. doi: 10.7554/eLife.32077.

3.

The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology.

Friesner J, Assmann SM, Bastow R, Bailey-Serres J, Beynon J, Brendel V, Buell CR, Bucksch A, Busch W, Demura T, Dinneny JR, Doherty CJ, Eveland AL, Falter-Braun P, Gehan MA, Gonzales M, Grotewold E, Gutierrez R, Kramer U, Krouk G, Ma S, Markelz RJC, Megraw M, Meyers BC, Murray JAH, Provart NJ, Rhee S, Smith R, Spalding EP, Taylor C, Teal TK, Torii KU, Town C, Vaughn M, Vierstra R, Ware D, Wilkins O, Williams C, Brady SM.

Plant Physiol. 2017 Dec;175(4):1499-1509. doi: 10.1104/pp.17.01490. No abstract available.

4.

TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.

Pal S, Kisko M, Dubos C, Lacombe B, Berthomieu P, Krouk G, Rouached H.

Plant Physiol. 2017 Oct;175(2):916-926. doi: 10.1104/pp.17.00568. Epub 2017 Aug 21.

5.

The world according to GARP transcription factors.

Safi A, Medici A, Szponarski W, Ruffel S, Lacombe B, Krouk G.

Curr Opin Plant Biol. 2017 Oct;39:159-167. doi: 10.1016/j.pbi.2017.07.006. Epub 2017 Aug 10. Review.

PMID:
28802165
6.

Reverse engineering highlights potential principles of large gene regulatory network design and learning.

Carré C, Mas A, Krouk G.

NPJ Syst Biol Appl. 2017 Jun 22;3:17. doi: 10.1038/s41540-017-0019-y. eCollection 2017.

7.

Nitrate signalling: Calcium bridges the nitrate gap.

Krouk G.

Nat Plants. 2017 Jun 19;3:17095. doi: 10.1038/nplants.2017.95. No abstract available.

PMID:
28628086
8.

Combinatorial interaction network of transcriptomic and phenotypic responses to nitrogen and hormones in the Arabidopsis thaliana root.

Ristova D, Carré C, Pervent M, Medici A, Kim GJ, Scalia D, Ruffel S, Birnbaum KD, Lacombe B, Busch W, Coruzzi GM, Krouk G.

Sci Signal. 2016 Oct 25;9(451):rs13.

PMID:
27811143
9.

Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics.

Bellati J, Champeyroux C, Hem S, Rofidal V, Krouk G, Maurel C, Santoni V.

Mol Cell Proteomics. 2016 Nov;15(11):3473-3487. Epub 2016 Sep 8.

10.

Nitrate Controls Root Development through Posttranscriptional Regulation of the NRT1.1/NPF6.3 Transporter/Sensor.

Bouguyon E, Perrine-Walker F, Pervent M, Rochette J, Cuesta C, Benkova E, Martinière A, Bach L, Krouk G, Gojon A, Nacry P.

Plant Physiol. 2016 Oct;172(2):1237-1248. Epub 2016 Aug 19.

11.

Nitrate Transport, Sensing, and Responses in Plants.

O'Brien JA, Vega A, Bouguyon E, Krouk G, Gojon A, Coruzzi G, Gutiérrez RA.

Mol Plant. 2016 Jun 6;9(6):837-56. doi: 10.1016/j.molp.2016.05.004. Epub 2016 May 19. Review.

12.

Hormones and nitrate: a two-way connection.

Krouk G.

Plant Mol Biol. 2016 Aug;91(6):599-606. doi: 10.1007/s11103-016-0463-x. Epub 2016 Mar 22. Review.

PMID:
27003907
13.

Long-distance nitrate signaling displays cytokinin dependent and independent branches.

Ruffel S, Poitout A, Krouk G, Coruzzi GM, Lacombe B.

J Integr Plant Biol. 2016 Mar;58(3):226-9. doi: 10.1111/jipb.12453. Epub 2016 Feb 23.

PMID:
26619818
14.

AtNIGT1/HRS1 integrates nitrate and phosphate signals at the Arabidopsis root tip.

Medici A, Marshall-Colon A, Ronzier E, Szponarski W, Wang R, Gojon A, Crawford NM, Ruffel S, Coruzzi GM, Krouk G.

Nat Commun. 2015 Feb 27;6:6274. doi: 10.1038/ncomms7274.

15.

GeneCloud Reveals Semantic Enrichment in Lists of Gene Descriptions.

Krouk G, Carré C, Fizames C, Gojon A, Ruffel S, Lacombe B.

Mol Plant. 2015 Jun;8(6):971-3. doi: 10.1016/j.molp.2015.02.005. Epub 2015 Feb 21. No abstract available.

16.

Multiple mechanisms of nitrate sensing by Arabidopsis nitrate transceptor NRT1.1.

Bouguyon E, Brun F, Meynard D, Kubeš M, Pervent M, Leran S, Lacombe B, Krouk G, Guiderdoni E, Zažímalová E, Hoyerová K, Nacry P, Gojon A.

Nat Plants. 2015 Mar 2;1:15015. doi: 10.1038/nplants.2015.15.

PMID:
27246882
17.

Finding a nitrogen niche: a systems integration of local and systemic nitrogen signalling in plants.

Li Y, Krouk G, Coruzzi GM, Ruffel S.

J Exp Bot. 2014 Oct;65(19):5601-10. doi: 10.1093/jxb/eru263. Epub 2014 Jun 24. Review.

PMID:
24963003
18.

Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis.

Para A, Li Y, Marshall-Colón A, Varala K, Francoeur NJ, Moran TM, Edwards MB, Hackley C, Bargmann BO, Birnbaum KD, McCombie WR, Krouk G, Coruzzi GM.

Proc Natl Acad Sci U S A. 2014 Jul 15;111(28):10371-6. doi: 10.1073/pnas.1404657111. Epub 2014 Jun 23.

19.

The primary nitrate response: a multifaceted signalling pathway.

Medici A, Krouk G.

J Exp Bot. 2014 Oct;65(19):5567-76. doi: 10.1093/jxb/eru245. Epub 2014 Jun 18. Review.

PMID:
24942915
20.

Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.

Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutiérrez RA.

BMC Genomics. 2013 Oct 11;14:701. doi: 10.1186/1471-2164-14-701.

21.

A map of cell type-specific auxin responses.

Bargmann BO, Vanneste S, Krouk G, Nawy T, Efroni I, Shani E, Choe G, Friml J, Bergmann DC, Estelle M, Birnbaum KD.

Mol Syst Biol. 2013;9:688. doi: 10.1038/msb.2013.40.

22.

Integration of responses within and across Arabidopsis natural accessions uncovers loci controlling root systems architecture.

Rosas U, Cibrian-Jaramillo A, Ristova D, Banta JA, Gifford ML, Fan AH, Zhou RW, Kim GJ, Krouk G, Birnbaum KD, Purugganan MD, Coruzzi GM.

Proc Natl Acad Sci U S A. 2013 Sep 10;110(37):15133-8. doi: 10.1073/pnas.1305883110. Epub 2013 Aug 26. Erratum in: Proc Natl Acad Sci U S A. 2015 May 12;112(19):E2555.

23.

Gene regulatory networks in plants: learning causality from time and perturbation.

Krouk G, Lingeman J, Colon AM, Coruzzi G, Shasha D.

Genome Biol. 2013 Jun 27;14(6):123. doi: 10.1186/gb-2013-14-6-123.

24.

ABA transport and transporters.

Boursiac Y, Léran S, Corratgé-Faillie C, Gojon A, Krouk G, Lacombe B.

Trends Plant Sci. 2013 Jun;18(6):325-33. doi: 10.1016/j.tplants.2013.01.007. Epub 2013 Mar 1. Review.

PMID:
23453706
25.

TARGET: a transient transformation system for genome-wide transcription factor target discovery.

Bargmann BO, Marshall-Colon A, Efroni I, Ruffel S, Birnbaum KD, Coruzzi GM, Krouk G.

Mol Plant. 2013 May;6(3):978-80. doi: 10.1093/mp/sst010. Epub 2013 Jan 18. No abstract available.

26.

RootScape: a landmark-based system for rapid screening of root architecture in Arabidopsis.

Ristova D, Rosas U, Krouk G, Ruffel S, Birnbaum KD, Coruzzi GM.

Plant Physiol. 2013 Mar;161(3):1086-96. doi: 10.1104/pp.112.210872. Epub 2013 Jan 18.

27.

[An original ion (nitrate) sensing mechanism: story of the discovery in plants and perspectives].

Krouk G, Gojon A.

Med Sci (Paris). 2011 Dec;27(12):1045-7. doi: 10.1051/medsci/20112712002. Epub 2011 Dec 23. Review. French. No abstract available.

28.

Nitrogen economics of root foraging: transitive closure of the nitrate-cytokinin relay and distinct systemic signaling for N supply vs. demand.

Ruffel S, Krouk G, Ristova D, Shasha D, Birnbaum KD, Coruzzi GM.

Proc Natl Acad Sci U S A. 2011 Nov 8;108(45):18524-9. doi: 10.1073/pnas.1108684108. Epub 2011 Oct 24.

29.

Iron and ROS control of the DownSTream mRNA decay pathway is essential for plant fitness.

Ravet K, Reyt G, Arnaud N, Krouk G, Djouani el-B, Boucherez J, Briat JF, Gaymard F.

EMBO J. 2012 Jan 4;31(1):175-86. doi: 10.1038/emboj.2011.341. Epub 2011 Sep 23.

30.

High nitrogen insensitive 9 (HNI9)-mediated systemic repression of root NO3- uptake is associated with changes in histone methylation.

Widiez T, El Kafafi el S, Girin T, Berr A, Ruffel S, Krouk G, Vayssières A, Shen WH, Coruzzi GM, Gojon A, Lepetit M.

Proc Natl Acad Sci U S A. 2011 Aug 9;108(32):13329-34. doi: 10.1073/pnas.1017863108. Epub 2011 Jul 25.

31.

A framework integrating plant growth with hormones and nutrients.

Krouk G, Ruffel S, Gutiérrez RA, Gojon A, Crawford NM, Coruzzi GM, Lacombe B.

Trends Plant Sci. 2011 Apr;16(4):178-82. doi: 10.1016/j.tplants.2011.02.004. Epub 2011 Mar 9.

PMID:
21393048
32.

Nitrate transceptor(s) in plants.

Gojon A, Krouk G, Perrine-Walker F, Laugier E.

J Exp Bot. 2011 Apr;62(7):2299-308. doi: 10.1093/jxb/erq419. Epub 2011 Jan 14. Review.

PMID:
21239382
33.

Predictive network modeling of the high-resolution dynamic plant transcriptome in response to nitrate.

Krouk G, Mirowski P, LeCun Y, Shasha DE, Coruzzi GM.

Genome Biol. 2010;11(12):R123. doi: 10.1186/gb-2010-11-12-r123. Epub 2010 Dec 23.

34.

Modeling the global effect of the basic-leucine zipper transcription factor 1 (bZIP1) on nitrogen and light regulation in Arabidopsis.

Obertello M, Krouk G, Katari MS, Runko SJ, Coruzzi GM.

BMC Syst Biol. 2010 Aug 12;4:111. doi: 10.1186/1752-0509-4-111.

35.

Nitrate-regulated auxin transport by NRT1.1 defines a mechanism for nutrient sensing in plants.

Krouk G, Lacombe B, Bielach A, Perrine-Walker F, Malinska K, Mounier E, Hoyerova K, Tillard P, Leon S, Ljung K, Zazimalova E, Benkova E, Nacry P, Gojon A.

Dev Cell. 2010 Jun 15;18(6):927-37. doi: 10.1016/j.devcel.2010.05.008.

36.

Nitrate signaling: adaptation to fluctuating environments.

Krouk G, Crawford NM, Coruzzi GM, Tsay YF.

Curr Opin Plant Biol. 2010 Jun;13(3):266-73. doi: 10.1016/j.pbi.2009.12.003. Epub 2010 Jan 21. Review.

PMID:
20093067
37.

A systems view of responses to nutritional cues in Arabidopsis: toward a paradigm shift for predictive network modeling.

Ruffel S, Krouk G, Coruzzi GM.

Plant Physiol. 2010 Feb;152(2):445-52. doi: 10.1104/pp.109.148502. Epub 2009 Nov 25. No abstract available.

38.

A system biology approach highlights a hormonal enhancer effect on regulation of genes in a nitrate responsive "biomodule".

Nero D, Krouk G, Tranchina D, Coruzzi GM.

BMC Syst Biol. 2009 Jun 6;3:59. doi: 10.1186/1752-0509-3-59.

39.

A systems approach uncovers restrictions for signal interactions regulating genome-wide responses to nutritional cues in Arabidopsis.

Krouk G, Tranchina D, Lejay L, Cruikshank AA, Shasha D, Coruzzi GM, Gutiérrez RA.

PLoS Comput Biol. 2009 Mar;5(3):e1000326. doi: 10.1371/journal.pcbi.1000326. Epub 2009 Mar 20.

40.

Regulation of the high-affinity NO3- uptake system by NRT1.1-mediated NO3- demand signaling in Arabidopsis.

Krouk G, Tillard P, Gojon A.

Plant Physiol. 2006 Nov;142(3):1075-86. Epub 2006 Sep 22.

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