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Items: 1 to 50 of 215

1.

Changes to virus taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2019).

Walker PJ, Siddell SG, Lefkowitz EJ, Mushegian AR, Dempsey DM, Dutilh BE, Harrach B, Harrison RL, Hendrickson RC, Junglen S, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Nibert M, Rubino L, Sabanadzovic S, Simmonds P, Varsani A, Zerbini FM, Davison AJ.

Arch Virol. 2019 Sep;164(9):2417-2429. doi: 10.1007/s00705-019-04306-w.

PMID:
31187277
2.

Analysis of Spounaviruses as a Case Study for the Overdue Reclassification of Tailed Phages.

Barylski J, Enault F, Dutilh BE, Schuller MBP, Edwards RA, Gillis A, Klumpp J, Knezevic P, Krupovic M, Kuhn JH, Lavigne R, Oksanen HM, Sullivan MB, Jang HB, Simmonds P, Aiewsakun P, Wittmann J, Tolstoy I, Brister JR, Kropinski AM, Adriaenssens EM.

Syst Biol. 2019 May 25. pii: syz036. doi: 10.1093/sysbio/syz036. [Epub ahead of print]

PMID:
31127947
3.

Still Something to Discover: Novel Insights intoEscherichia coli Phage Diversity and Taxonomy.

Korf IHE, Meier-Kolthoff JP, Adriaenssens EM, Kropinski AM, Nimtz M, Rohde M, van Raaij MJ, Wittmann J.

Viruses. 2019 May 17;11(5). pii: E454. doi: 10.3390/v11050454.

4.

Complete genome sequence analysis of temperate Erwinia bacteriophages 49 and 59.

Zlatohurska M, Gorb T, Romaniuk L, Korol N, Faidiuk Y, Kropinski AM, Kushkina A, Tovkach F.

J Basic Microbiol. 2019 Jul;59(7):754-764. doi: 10.1002/jobm.201900205. Epub 2019 Jun 6.

PMID:
31099101
5.

Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks.

Bin Jang H, Bolduc B, Zablocki O, Kuhn JH, Roux S, Adriaenssens EM, Brister JR, Kropinski AM, Krupovic M, Lavigne R, Turner D, Sullivan MB.

Nat Biotechnol. 2019 Jun;37(6):632-639. doi: 10.1038/s41587-019-0100-8. Epub 2019 May 6.

6.

Additional changes to taxonomy ratified in a special vote by the International Committee on Taxonomy of Viruses (October 2018).

Siddell SG, Walker PJ, Lefkowitz EJ, Mushegian AR, Adams MJ, Dutilh BE, Gorbalenya AE, Harrach B, Harrison RL, Junglen S, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Nibert M, Rubino L, Sabanadzovic S, Sanfaçon H, Simmonds P, Varsani A, Zerbini FM, Davison AJ.

Arch Virol. 2019 Mar;164(3):943-946. doi: 10.1007/s00705-018-04136-2.

PMID:
30663020
7.

Control of Salmonella Newport on cherry tomato using a cocktail of lytic bacteriophages.

El-Dougdoug NK, Cucic S, Abdelhamid AG, Brovko L, Kropinski AM, Griffiths MW, Anany H.

Int J Food Microbiol. 2019 Mar 16;293:60-71. doi: 10.1016/j.ijfoodmicro.2019.01.003. Epub 2019 Jan 6.

PMID:
30641253
8.

Strengthening the Interaction of the Virology Community with the International Committee on Taxonomy of Viruses (ICTV) by Linking Virus Names and Their Abbreviations to Virus Species.

Calisher CH, Briese T, Brister JR, Charrel RN, Dürrwald R, Ebihara H, Fulhorst CF, Gāo GF, Groschup MH, Haddow AD, Hyndman TH, Junglen S, Klempa B, Klingström J, Kropinski AM, Krupovic M, LaBeaud AD, Maes P, Nowotny N, Nunes MRT, Payne SL, Radoshitzky SR, Rubbenstroth D, Sabanadzovic S, Sasaya T, Stenglein MD, Varsani A, Wahl V, Weaver SC, Zerbini FM, Vasilakis N, Kuhn JH.

Syst Biol. 2019 Sep 1;68(5):828-839. doi: 10.1093/sysbio/syy087.

PMID:
30597118
9.

Minimum Information about an Uncultivated Virus Genome (MIUViG).

Roux S, Adriaenssens EM, Dutilh BE, Koonin EV, Kropinski AM, Krupovic M, Kuhn JH, Lavigne R, Brister JR, Varsani A, Amid C, Aziz RK, Bordenstein SR, Bork P, Breitbart M, Cochrane GR, Daly RA, Desnues C, Duhaime MB, Emerson JB, Enault F, Fuhrman JA, Hingamp P, Hugenholtz P, Hurwitz BL, Ivanova NN, Labonté JM, Lee KB, Malmstrom RR, Martinez-Garcia M, Mizrachi IK, Ogata H, Páez-Espino D, Petit MA, Putonti C, Rattei T, Reyes A, Rodriguez-Valera F, Rosario K, Schriml L, Schulz F, Steward GF, Sullivan MB, Sunagawa S, Suttle CA, Temperton B, Tringe SG, Thurber RV, Webster NS, Whiteson KL, Wilhelm SW, Wommack KE, Woyke T, Wrighton KC, Yilmaz P, Yoshida T, Young MJ, Yutin N, Allen LZ, Kyrpides NC, Eloe-Fadrosh EA.

Nat Biotechnol. 2019 Jan;37(1):29-37. doi: 10.1038/nbt.4306. Epub 2018 Dec 17.

PMID:
30556814
10.

Draft Genome Assembly of a Potentially Zoonotic Cryptosporidium parvum Isolate, UKP1.

Nash JHE, Robertson J, Elwin K, Chalmers RA, Kropinski AM, Guy RA.

Microbiol Resour Announc. 2018 Nov 15;7(19). pii: e01291-18. doi: 10.1128/MRA.01291-18. eCollection 2018 Nov.

11.

Two novel temperate bacteriophages infecting Streptococcus pyogenes: Their genomes, morphology and stability.

Harhala M, Barylski J, Humińska-Lisowska K, Lecion D, Wojciechowicz J, Lahutta K, Kuś M, Kropinski AM, Nowak S, Nowicki G, Hodyra-Stefaniak K, Dąbrowska K.

PLoS One. 2018 Oct 19;13(10):e0205995. doi: 10.1371/journal.pone.0205995. eCollection 2018.

12.

Evaluation of the genomic diversity of viruses infecting bacteria, archaea and eukaryotes using a common bioinformatic platform: steps towards a unified taxonomy.

Aiewsakun P, Adriaenssens EM, Lavigne R, Kropinski AM, Simmonds P.

J Gen Virol. 2018 Sep;99(9):1331-1343. doi: 10.1099/jgv.0.001110. Epub 2018 Jul 17.

13.

Bacteriophage research - What we have learnt and what still needs to be addressed.

Kropinski AM.

Res Microbiol. 2018 Nov;169(9):481-487. doi: 10.1016/j.resmic.2018.05.002. Epub 2018 May 16.

PMID:
29777837
14.

Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2018).

King AMQ, Lefkowitz EJ, Mushegian AR, Adams MJ, Dutilh BE, Gorbalenya AE, Harrach B, Harrison RL, Junglen S, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Nibert ML, Rubino L, Sabanadzovic S, Sanfaçon H, Siddell SG, Simmonds P, Varsani A, Zerbini FM, Davison AJ.

Arch Virol. 2018 Sep;163(9):2601-2631. doi: 10.1007/s00705-018-3847-1. Epub 2018 May 12.

PMID:
29754305
15.

Genomic analysis and immune response in a murine mastitis model of vB_EcoM-UFV13, a potential biocontrol agent for use in dairy cows.

da Silva Duarte V, Dias RS, Kropinski AM, Campanaro S, Treu L, Siqueira C, Vieira MS, da Silva Paes I, Santana GR, Martins F, Crispim JS, da Silva Xavier A, Ferro CG, Vidigal PMP, da Silva CC, de Paula SO.

Sci Rep. 2018 May 1;8(1):6845. doi: 10.1038/s41598-018-24896-w.

16.

Correction: Sequence, genome organization, annotation and proteomics of the thermophilic, 47.7-kb Geobacillus stearothermophilus bacteriophage TP-84 and its classification in the new Tp84virus genus.

Skowron PM, Kropinski AM, Zebrowska J, Janus L, Szemiako K, Czajkowska E, Maciejewska N, Skowron M, Łoś J, Łoś M, Zylicz-Stachula A.

PLoS One. 2018 Apr 26;13(4):e0196798. doi: 10.1371/journal.pone.0196798. eCollection 2018.

17.

The Sequence of Two Bacteriophages with Hypermodified Bases Reveals Novel Phage-Host Interactions.

Kropinski AM, Turner D, Nash JHE, Ackermann HW, Lingohr EJ, Warren RA, Ehrlich KC, Ehrlich M.

Viruses. 2018 Apr 24;10(5). pii: E217. doi: 10.3390/v10050217.

18.

A T4virus prevents biofilm formation by Trueperella pyogenes.

da Silva Duarte V, Dias RS, Kropinski AM, da Silva Xavier A, Ferro CG, Vidigal PMP, da Silva CC, de Paula SO.

Vet Microbiol. 2018 May;218:45-51. doi: 10.1016/j.vetmic.2018.03.025. Epub 2018 Mar 22.

PMID:
29685220
19.

Prevalence of fecal viruses and bacteriophage in Canadian farmed mink (Neovison vison).

Xie XT, Kropinski AM, Tapscott B, Weese JS, Turner PV.

Microbiologyopen. 2019 Jan;8(1):e00622. doi: 10.1002/mbo3.622. Epub 2018 Apr 10.

20.

Sequence, genome organization, annotation and proteomics of the thermophilic, 47.7-kb Geobacillus stearothermophilus bacteriophage TP-84 and its classification in the new Tp84virus genus.

Skowron PM, Kropinski AM, Zebrowska J, Janus L, Szemiako K, Czajkowska E, Maciejewska N, Skowron M, Łoś J, Łoś M, Zylicz-Stachula A.

PLoS One. 2018 Apr 6;13(4):e0195449. doi: 10.1371/journal.pone.0195449. eCollection 2018. Erratum in: PLoS One. 2018 Apr 26;13(4):e0196798.

21.

Taxonomy of prokaryotic viruses: 2017 update from the ICTV Bacterial and Archaeal Viruses Subcommittee.

Adriaenssens EM, Wittmann J, Kuhn JH, Turner D, Sullivan MB, Dutilh BE, Jang HB, van Zyl LJ, Klumpp J, Lobocka M, Moreno Switt AI, Rumnieks J, Edwards RA, Uchiyama J, Alfenas-Zerbini P, Petty NK, Kropinski AM, Barylski J, Gillis A, Clokie MRC, Prangishvili D, Lavigne R, Aziz RK, Duffy S, Krupovic M, Poranen MM, Knezevic P, Enault F, Tong Y, Oksanen HM, Rodney Brister J.

Arch Virol. 2018 Apr;163(4):1125-1129. doi: 10.1007/s00705-018-3723-z. Epub 2018 Jan 22. No abstract available.

PMID:
29356990
22.

Investigation of putative invasion determinants of Actinobacillus species using comparative genomics.

Bujold AR, Shure AE, Liu R, Kropinski AM, MacInnes JI.

Genomics. 2019 Jan;111(1):59-66. doi: 10.1016/j.ygeno.2018.01.001. Epub 2018 Jan 6.

PMID:
29317305
23.

Comparative Analysis of 37 Acinetobacter Bacteriophages.

Turner D, Ackermann HW, Kropinski AM, Lavigne R, Sutton JM, Reynolds DM.

Viruses. 2017 Dec 24;10(1). pii: E5. doi: 10.3390/v10010005.

24.

Thermal-Stability and Reconstitution Ability of Listeria Phages P100 and A511.

Ahmadi H, Radford D, Kropinski AM, Lim LT, Balamurugan S.

Front Microbiol. 2017 Dec 5;8:2375. doi: 10.3389/fmicb.2017.02375. eCollection 2017.

25.

Essential Steps in Characterizing Bacteriophages: Biology, Taxonomy, and Genome Analysis.

Aziz RK, Ackermann HW, Petty NK, Kropinski AM.

Methods Mol Biol. 2018;1681:197-215. doi: 10.1007/978-1-4939-7343-9_15.

PMID:
29134597
26.

Practical Advice on the One-Step Growth Curve.

Kropinski AM.

Methods Mol Biol. 2018;1681:41-47. doi: 10.1007/978-1-4939-7343-9_3.

PMID:
29134585
27.

Bacteriophage Taxonomy: An Evolving Discipline.

Tolstoy I, Kropinski AM, Brister JR.

Methods Mol Biol. 2018;1693:57-71. doi: 10.1007/978-1-4939-7395-8_6.

PMID:
29119432
28.

A Lytic Providencia rettgeri Virus of Potential Therapeutic Value Is a Deep-Branching Member of the T5virus Genus.

Oliveira H, Pinto G, Hendrix H, Noben JP, Gawor J, Kropinski AM, Łobocka M, Lavigne R, Azeredo J.

Appl Environ Microbiol. 2017 Nov 16;83(23). pii: e01567-17. doi: 10.1128/AEM.01567-17. Print 2017 Dec 1.

29.

Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2017).

Adams MJ, Lefkowitz EJ, King AMQ, Harrach B, Harrison RL, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Mushegian AR, Nibert M, Sabanadzovic S, Sanfaçon H, Siddell SG, Simmonds P, Varsani A, Zerbini FM, Gorbalenya AE, Davison AJ.

Arch Virol. 2017 Aug;162(8):2505-2538. doi: 10.1007/s00705-017-3358-5. Epub 2017 Apr 22.

PMID:
28434098
30.

Characterization and genomic analyses of two newly isolated Morganella phages define distant members among Tevenvirinae and Autographivirinae subfamilies.

Oliveira H, Pinto G, Oliveira A, Noben JP, Hendrix H, Lavigne R, Łobocka M, Kropinski AM, Azeredo J.

Sci Rep. 2017 Apr 7;7:46157. doi: 10.1038/srep46157.

31.

50 years of the International Committee on Taxonomy of Viruses: progress and prospects.

Adams MJ, Lefkowitz EJ, King AM, Harrach B, Harrison RL, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Mushegian AR, Nibert ML, Sabanadzovic S, Sanfaçon H, Siddell SG, Simmonds P, Varsani A, Zerbini FM, Orton RJ, Smith DB, Gorbalenya AE, Davison AJ.

Arch Virol. 2017 May;162(5):1441-1446. doi: 10.1007/s00705-016-3215-y. Epub 2017 Jan 11.

PMID:
28078475
32.

NetF-producing Clostridium perfringens: Clonality and plasmid pathogenicity loci analysis.

Mehdizadeh Gohari I, Kropinski AM, Weese SJ, Whitehead AE, Parreira VR, Boerlin P, Prescott JF.

Infect Genet Evol. 2017 Apr;49:32-38. doi: 10.1016/j.meegid.2016.12.028. Epub 2017 Jan 3.

PMID:
28062388
33.

Taxonomy of prokaryotic viruses: 2016 update from the ICTV bacterial and archaeal viruses subcommittee.

Adriaenssens EM, Krupovic M, Knezevic P, Ackermann HW, Barylski J, Brister JR, Clokie MR, Duffy S, Dutilh BE, Edwards RA, Enault F, Jang HB, Klumpp J, Kropinski AM, Lavigne R, Poranen MM, Prangishvili D, Rumnieks J, Sullivan MB, Wittmann J, Oksanen HM, Gillis A, Kuhn JH.

Arch Virol. 2017 Apr;162(4):1153-1157. doi: 10.1007/s00705-016-3173-4. Epub 2016 Dec 31. No abstract available.

PMID:
28040838
34.

Complete Genome Sequence of vB_EcoM-UFV13, a New Bacteriophage Able To Disrupt Trueperella pyogenes Biofilm.

Duarte VS, Dias RS, Kropinski AM, Vidigal PM, Sousa FO, Xavier AS, Silva CC, de Paula SO.

Genome Announc. 2016 Dec 8;4(6). pii: e01292-16. doi: 10.1128/genomeA.01292-16.

35.

Possibility and Challenges of Conversion of Current Virus Species Names to Linnaean Binomials.

Postler TS, Clawson AN, Amarasinghe GK, Basler CF, Bavari S, Benko M, Blasdell KR, Briese T, Buchmeier MJ, Bukreyev A, Calisher CH, Chandran K, Charrel R, Clegg CS, Collins PL, Juan Carlos T, Derisi JL, Dietzgen RG, Dolnik O, Dürrwald R, Dye JM, Easton AJ, Emonet S, Formenty P, Fouchier RAM, Ghedin E, Gonzalez JP, Harrach B, Hewson R, Horie M, Jiang D, Kobinger G, Kondo H, Kropinski AM, Krupovic M, Kurath G, Lamb RA, Leroy EM, Lukashevich IS, Maisner A, Mushegian AR, Netesov SV, Nowotny N, Patterson JL, Payne SL, PaWeska JT, Peters CJ, Radoshitzky SR, Rima BK, Romanowski V, Rubbenstroth D, Sabanadzovic S, Sanfaçon H, Salvato MS, Schwemmle M, Smither SJ, Stenglein MD, Stone DM, Takada A, Tesh RB, Tomonaga K, Tordo N, Towner JS, Vasilakis N, Volchkov VE, Wahl-Jensen V, Walker PJ, Wang LF, Varsani A, Whitfield AE, Zerbini FM, Kuhn JH.

Syst Biol. 2017 May 1;66(3):463-473. doi: 10.1093/sysbio/syw096.

36.

Molecular characterization of pathogenic and nonpathogenic fowl aviadenovirus serotype 11 isolates.

Slaine PD, Ackford JG, Kropinski AM, Kozak RA, Krell PJ, Nagy É.

Can J Microbiol. 2016 Dec;62(12):993-1002. Epub 2016 Jul 12.

PMID:
27781484
37.

Klebsiella phages representing a novel clade of viruses with an unknown DNA modification and biotechnologically interesting enzymes.

Maciejewska B, Roszniowski B, Espaillat A, Kęsik-Szeloch A, Majkowska-Skrobek G, Kropinski AM, Briers Y, Cava F, Lavigne R, Drulis-Kawa Z.

Appl Microbiol Biotechnol. 2017 Jan;101(2):673-684. doi: 10.1007/s00253-016-7928-3. Epub 2016 Oct 21.

38.

Genome Sequence of vB_AbaS_TRS1, a Viable Prophage Isolated from Acinetobacter baumannii Strain A118.

Turner D, Wand ME, Sutton JM, Centron D, Kropinski AM, Reynolds DM.

Genome Announc. 2016 Oct 13;4(5). pii: e01051-16. doi: 10.1128/genomeA.01051-16.

39.

Development of a Phage Cocktail to Control Proteus mirabilis Catheter-associated Urinary Tract Infections.

Melo LD, Veiga P, Cerca N, Kropinski AM, Almeida C, Azeredo J, Sillankorva S.

Front Microbiol. 2016 Jun 28;7:1024. doi: 10.3389/fmicb.2016.01024. eCollection 2016.

40.

Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2016).

Adams MJ, Lefkowitz EJ, King AM, Harrach B, Harrison RL, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Mushegian AR, Nibert M, Sabanadzovic S, Sanfaçon H, Siddell SG, Simmonds P, Varsani A, Zerbini FM, Gorbalenya AE, Davison AJ.

Arch Virol. 2016 Oct;161(10):2921-49. doi: 10.1007/s00705-016-2977-6. Epub 2016 Jul 16.

PMID:
27424026
41.

Yersinia enterocolitica-Specific Infection by Bacteriophages TG1 and ϕR1-RT Is Dependent on Temperature-Regulated Expression of the Phage Host Receptor OmpF.

Leon-Velarde CG, Happonen L, Pajunen M, Leskinen K, Kropinski AM, Mattinen L, Rajtor M, Zur J, Smith D, Chen S, Nawaz A, Johnson RP, Odumeru JA, Griffiths MW, Skurnik M.

Appl Environ Microbiol. 2016 Aug 15;82(17):5340-53. doi: 10.1128/AEM.01594-16. Print 2016 Sep 1.

42.

Evaluation of Molecular Methods for Identification of Salmonella Serovars.

Yoshida C, Gurnik S, Ahmad A, Blimkie T, Murphy SA, Kropinski AM, Nash JH.

J Clin Microbiol. 2016 Aug;54(8):1992-8. doi: 10.1128/JCM.00262-16. Epub 2016 May 18.

43.

Draft Whole-Genome Sequences of 25 Salmonella enterica Strains Representing 24 Serovars.

Yoshida C, Brumwell SL, Lingohr EJ, Ahmad A, Blimkie TM, Kogan BA, Pilsworth J, Rehman MA, Schleicher KL, Shanmugaraj J, Kropinski AM, Nash JH.

Genome Announc. 2016 Mar 3;4(2). pii: e01718-15. doi: 10.1128/genomeA.01718-15.

44.

Plasmid Characterization and Chromosome Analysis of Two netF+ Clostridium perfringens Isolates Associated with Foal and Canine Necrotizing Enteritis.

Mehdizadeh Gohari I, Kropinski AM, Weese SJ, Parreira VR, Whitehead AE, Boerlin P, Prescott JF.

PLoS One. 2016 Feb 9;11(2):e0148344. doi: 10.1371/journal.pone.0148344. eCollection 2016.

45.

Taxonomy of prokaryotic viruses: update from the ICTV bacterial and archaeal viruses subcommittee.

Krupovic M, Dutilh BE, Adriaenssens EM, Wittmann J, Vogensen FK, Sullivan MB, Rumnieks J, Prangishvili D, Lavigne R, Kropinski AM, Klumpp J, Gillis A, Enault F, Edwards RA, Duffy S, Clokie MR, Barylski J, Ackermann HW, Kuhn JH.

Arch Virol. 2016 Apr;161(4):1095-9. doi: 10.1007/s00705-015-2728-0. Epub 2016 Jan 5. No abstract available.

PMID:
26733293
46.
47.

Complete Genome Sequence of Pseudomonas aeruginosa Phage vB_PaeM_CEB_DP1.

Pires DP, Sillankorva S, Kropinski AM, Lu TK, Azeredo J.

Genome Announc. 2015 Sep 24;3(5). pii: e00918-15. doi: 10.1128/genomeA.00918-15.

48.

Taxonomic reassessment of N4-like viruses using comparative genomics and proteomics suggests a new subfamily - "Enquartavirinae".

Wittmann J, Klumpp J, Moreno Switt AI, Yagubi A, Ackermann HW, Wiedmann M, Svircev A, Nash JH, Kropinski AM.

Arch Virol. 2015 Dec;160(12):3053-62. doi: 10.1007/s00705-015-2609-6. Epub 2015 Sep 23.

PMID:
26395091
49.

Comparative analysis of multiple inducible phages from Mannheimia haemolytica.

Niu YD, Cook SR, Wang J, Klima CL, Hsu YH, Kropinski AM, Turner D, McAllister TA.

BMC Microbiol. 2015 Aug 30;15:175. doi: 10.1186/s12866-015-0494-5.

50.

Campylobacter group II phage CP21 is the prototype of a new subgroup revealing a distinct modular genome organization and host specificity.

Jäckel C, Hammerl JA, Reetz J, Kropinski AM, Hertwig S.

BMC Genomics. 2015 Aug 22;16:629. doi: 10.1186/s12864-015-1837-1.

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