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Items: 1 to 50 of 175

1.

The influence of natural variation and organohalogenated contaminants on physiological parameters in white-tailed eagle (Haliaeetus albicilla) nestlings from Norway.

Løseth ME, Flo J, Sonne C, Krogh AKH, Nygård T, Bustnes JO, Jenssen BM, Jaspers VLB.

Environ Res. 2019 Jul 15;177:108586. doi: 10.1016/j.envres.2019.108586. [Epub ahead of print]

2.

INVESTIGATION INTO CARDIOVASCULAR ASSESSMENT OF CAPTIVE ADULT SCARLET IBIS (EUDOCIMUS RUBER).

Perrin KL, Willesen JL, Koch J, Langhorn R, Krogh AK, Saxmose Nielsen S, Bertelsen MF.

J Zoo Wildl Med. 2019 Apr;50(1):190-198. doi: 10.1638/2017-0208.

PMID:
31120678
3.

Aggregating resistant Staphylococcus aureus induces hypocoagulability, hyperfibrinolysis, phagocytosis, and neutrophil, monocyte, and lymphocyte binding in canine whole blood.

Krogh AKH, Haaber J, Bochsen L, Ingmer H, Kristensen AT.

Vet Clin Pathol. 2018 Dec;47(4):560-574. doi: 10.1111/vcp.12679.

PMID:
30586190
4.

Genomic Analyses from Non-invasive Prenatal Testing Reveal Genetic Associations, Patterns of Viral Infections, and Chinese Population History.

Liu S, Huang S, Chen F, Zhao L, Yuan Y, Francis SS, Fang L, Li Z, Lin L, Liu R, Zhang Y, Xu H, Li S, Zhou Y, Davies RW, Liu Q, Walters RG, Lin K, Ju J, Korneliussen T, Yang MA, Fu Q, Wang J, Zhou L, Krogh A, Zhang H, Wang W, Chen Z, Cai Z, Yin Y, Yang H, Mao M, Shendure J, Wang J, Albrechtsen A, Jin X, Nielsen R, Xu X.

Cell. 2018 Oct 4;175(2):347-359.e14. doi: 10.1016/j.cell.2018.08.016.

PMID:
30290141
5.

Accurate genotyping across variant classes and lengths using variant graphs.

Sibbesen JA, Maretty L; Danish Pan-Genome Consortium, Krogh A.

Nat Genet. 2018 Jul;50(7):1054-1059. doi: 10.1038/s41588-018-0145-5. Epub 2018 Jun 18.

PMID:
29915429
6.

THE ACUTE-PHASE AND HEMOSTATIC RESPONSE IN DROMEDARY CAMELS ( CAMELUS DROMEDARIUS).

Greunz EM, Krogh AKH, Pieters W, Ruiz OA, Bohner J, Reckendorf A, Monaco D, Bertelsen MF.

J Zoo Wildl Med. 2018 Jun;49(2):361-370. doi: 10.1638/2017-0221.1.

PMID:
29900796
7.

Analytical validation of a flow cytometric protocol for quantification of platelet microparticles in dogs.

Cremer SE, Krogh AKH, Hedström MEK, Christiansen LB, Tarnow I, Kristensen AT.

Vet Clin Pathol. 2018 Jun;47(2):186-196. doi: 10.1111/vcp.12605. Epub 2018 Mar 30.

PMID:
29601099
8.

THROMBOELASTOGRAPHY IN THE HEALTHY ASIAN ELEPHANT ( ELEPHAS MAXIMUS): REFERENCE INTERVALS AND EFFECTS OF STORAGE.

Perrin KL, Krogh AK, Kjelgaard-Hansen M, Howard L, Bochsen L, Kiso WK, Schmitt D, Kristensen AT, Bertelsen MF.

J Zoo Wildl Med. 2018 Mar;49(1):54-63. doi: 10.1638/2017-0179R.1.

PMID:
29517458
9.

Sugar Metabolism of the First Thermophilic Planctomycete Thermogutta terrifontis: Comparative Genomic and Transcriptomic Approaches.

Elcheninov AG, Menzel P, Gudbergsdottir SR, Slesarev AI, Kadnikov VV, Krogh A, Bonch-Osmolovskaya EA, Peng X, Kublanov IV.

Front Microbiol. 2017 Nov 2;8:2140. doi: 10.3389/fmicb.2017.02140. eCollection 2017.

10.

Erratum.

Fox KAA, Gersh BJ, Traore S, John Camm A, Kayani G, Krogh A, Shweta S, Kakkar AK; GARFIELD-AF Investigators.

Eur Heart J Qual Care Clin Outcomes. 2017 Oct 1;3(4):328. doi: 10.1093/ehjqcco/qcx024. No abstract available.

PMID:
29044400
11.

Evolving quality standards for large-scale registries: the GARFIELD-AF experience.

Fox KAA, Gersh BJ, Traore S, John Camm A, Kayani G, Krogh A, Shweta S, Kakkar AK; GARFIELD-AF Investigators.

Eur Heart J Qual Care Clin Outcomes. 2017 Apr 1;3(2):114-122. doi: 10.1093/ehjqcco/qcw058. Review. Erratum in: Eur Heart J Qual Care Clin Outcomes. 2017 Oct 1;3(4):328.

PMID:
28927171
12.

Sequencing and de novo assembly of 150 genomes from Denmark as a population reference.

Maretty L, Jensen JM, Petersen B, Sibbesen JA, Liu S, Villesen P, Skov L, Belling K, Theil Have C, Izarzugaza JMG, Grosjean M, Bork-Jensen J, Grove J, Als TD, Huang S, Chang Y, Xu R, Ye W, Rao J, Guo X, Sun J, Cao H, Ye C, van Beusekom J, Espeseth T, Flindt E, Friborg RM, Halager AE, Le Hellard S, Hultman CM, Lescai F, Li S, Lund O, Løngren P, Mailund T, Matey-Hernandez ML, Mors O, Pedersen CNS, Sicheritz-Pontén T, Sullivan P, Syed A, Westergaard D, Yadav R, Li N, Xu X, Hansen T, Krogh A, Bolund L, Sørensen TIA, Pedersen O, Gupta R, Rasmussen S, Besenbacher S, Børglum AD, Wang J, Eiberg H, Kristiansen K, Brunak S, Schierup MH.

Nature. 2017 Aug 3;548(7665):87-91. doi: 10.1038/nature23264. Epub 2017 Jul 26.

PMID:
28746312
13.

Highly accessible AU-rich regions in 3' untranslated regions are hotspots for binding of regulatory factors.

Plass M, Rasmussen SH, Krogh A.

PLoS Comput Biol. 2017 Apr 14;13(4):e1005460. doi: 10.1371/journal.pcbi.1005460. eCollection 2017 Apr.

14.

Congenital thrombotic thrombocytopenic purpura.

Krogh AS, Waage A, Quist-Paulsen P.

Tidsskr Nor Laegeforen. 2016 Sep 27;136(17):1452-7. doi: 10.4045/tidsskr.15.1272. eCollection 2016 Sep. Review. English, Norwegian.

15.

RNA Sequencing of Trigeminal Ganglia in Rattus Norvegicus after Glyceryl Trinitrate Infusion with Relevance to Migraine.

Hougaard Pedersen S, Maretty L, Ramachandran R, Sibbesen JA, Yakimov V, Elgaard-Christensen R, Hansen TF, Krogh A, Olesen J, Jansen-Olesen I.

PLoS One. 2016 May 23;11(5):e0155039. doi: 10.1371/journal.pone.0155039. eCollection 2016.

16.

Fast and sensitive taxonomic classification for metagenomics with Kaiju.

Menzel P, Ng KL, Krogh A.

Nat Commun. 2016 Apr 13;7:11257. doi: 10.1038/ncomms11257.

17.

Assessment of headache characteristics in a general adolescent population: a comparison between retrospective interviews and prospective diary recordings.

Krogh AB, Larsson B, Salvesen Ø, Linde M.

J Headache Pain. 2016;17:14. doi: 10.1186/s10194-016-0602-4. Epub 2016 Feb 24.

18.

Transcriptome dynamics of the microRNA inhibition response.

Wen J, Leucci E, Vendramin R, Kauppinen S, Lund AH, Krogh A, Parker BJ.

Nucleic Acids Res. 2016 May 19;44(9):4486. doi: 10.1093/nar/gkw091. Epub 2016 Feb 9. No abstract available.

19.

Discovery, genotyping and characterization of structural variation and novel sequence at single nucleotide resolution from de novo genome assemblies on a population scale.

Liu S, Huang S, Rao J, Ye W; Genome Denmark ConsortiumII, Krogh A, Wang J.

Gigascience. 2015 Dec 24;4:64. doi: 10.1186/s13742-015-0103-4. eCollection 2015.

20.

Novel viral genomes identified from six metagenomes reveal wide distribution of archaeal viruses and high viral diversity in terrestrial hot springs.

Gudbergsdóttir SR, Menzel P, Krogh A, Young M, Peng X.

Environ Microbiol. 2016 Mar;18(3):863-74. doi: 10.1111/1462-2920.13079. Epub 2015 Dec 21.

PMID:
26439881
21.

Corrigendum: Genome-wide adaptive complexes to underground stresses in blind mole rats Spalax.

Fang X, Nevo E, Han L, Levanon EY, Zhao J, Avivi A, Larkin D, Jiang X, Feranchuk S, Zhu Y, Fishman A, Feng Y, Sher N, Xiong Z, Hankeln T, Huang Z, Gorbunova V, Zhang L, Zhao W, Wildman DE, Xiong Y, Gudkov A, Zheng Q, Rechavi G, Liu S, Bazak L, Chen J, Knisbacher BA, Lu Y, Shams I, Gajda K, Farré M, Kim J, Lewin HA, Ma J, Band M, Bicker A, Kranz A, Mattheus T, Schmidt H, Seluanov A, Azpurua J, McGowen MR, Ben Jacob E, Li K, Peng S, Zhu X, Liao X, Li S, Krogh A, Zhou X, Brodsky L, Wang J.

Nat Commun. 2015 Aug 12;6:8051. doi: 10.1038/ncomms9051. No abstract available.

PMID:
26264976
22.

A comparison between prospective Internet-based and paper diary recordings of headache among adolescents in the general population.

Krogh AB, Larsson B, Salvesen Ø, Linde M.

Cephalalgia. 2016 Apr;36(4):335-45. doi: 10.1177/0333102415591506. Epub 2015 Jun 19.

PMID:
26092285
23.

Transcriptome dynamics of the microRNA inhibition response.

Wen J, Leucci E, Vendramin R, Kauppinen S, Lund AH, Krogh A, Parker BJ.

Nucleic Acids Res. 2015 Jul 27;43(13):6207-21. doi: 10.1093/nar/gkv603. Epub 2015 Jun 18. Erratum in: Nucleic Acids Res. 2016 May 19;44(9):4486.

24.

Drosophila Imp iCLIP identifies an RNA assemblage coordinating F-actin formation.

Hansen HT, Rasmussen SH, Adolph SK, Plass M, Krogh A, Sanford J, Nielsen FC, Christiansen J.

Genome Biol. 2015 Jun 9;16:123. doi: 10.1186/s13059-015-0687-0.

25.

De novo assembly of a haplotype-resolved human genome.

Cao H, Wu H, Luo R, Huang S, Sun Y, Tong X, Xie Y, Liu B, Yang H, Zheng H, Li J, Li B, Wang Y, Yang F, Sun P, Liu S, Gao P, Huang H, Sun J, Chen D, He G, Huang W, Huang Z, Li Y, Tellier LC, Liu X, Feng Q, Xu X, Zhang X, Bolund L, Krogh A, Kristiansen K, Drmanac R, Drmanac S, Nielsen R, Li S, Wang J, Yang H, Li Y, Wong GK, Wang J.

Nat Biotechnol. 2015 Jun;33(6):617-22. doi: 10.1038/nbt.3200. Epub 2015 May 25.

PMID:
26006006
26.

Cancers of unknown primary origin (CUP) are characterized by chromosomal instability (CIN) compared to metastasis of know origin.

Vikeså J, Møller AK, Kaczkowski B, Borup R, Winther O, Henao R, Krogh A, Perell K, Jensen F, Daugaard G, Nielsen FC.

BMC Cancer. 2015 Mar 19;15:151. doi: 10.1186/s12885-015-1128-x.

27.

SHAPE Selection (SHAPES) enrich for RNA structure signal in SHAPE sequencing-based probing data.

Poulsen LD, Kielpinski LJ, Salama SR, Krogh A, Vinther J.

RNA. 2015 May;21(5):1042-52. doi: 10.1261/rna.047068.114. Epub 2015 Mar 24.

28.

Prevalence and disability of headache among Norwegian adolescents: A cross-sectional school-based study.

Krogh AB, Larsson B, Linde M.

Cephalalgia. 2015 Nov;35(13):1181-91. doi: 10.1177/0333102415573512. Epub 2015 Feb 26.

PMID:
25720767
29.

Comparative Metagenomics of Eight Geographically Remote Terrestrial Hot Springs.

Menzel P, Gudbergsdóttir SR, Rike AG, Lin L, Zhang Q, Contursi P, Moracci M, Kristjansson JK, Bolduc B, Gavrilov S, Ravin N, Mardanov A, Bonch-Osmolovskaya E, Young M, Krogh A, Peng X.

Microb Ecol. 2015 Aug;70(2):411-24. doi: 10.1007/s00248-015-0576-9. Epub 2015 Feb 25.

PMID:
25712554
30.

Rapid detection of structural variation in a human genome using nanochannel-based genome mapping technology.

Cao H, Hastie AR, Cao D, Lam ET, Sun Y, Huang H, Liu X, Lin L, Andrews W, Chan S, Huang S, Tong X, Requa M, Anantharaman T, Krogh A, Yang H, Cao H, Xu X.

Gigascience. 2014 Dec 30;3(1):34. doi: 10.1186/2047-217X-3-34. eCollection 2014.

31.

Novel variation and de novo mutation rates in population-wide de novo assembled Danish trios.

Besenbacher S, Liu S, Izarzugaza JM, Grove J, Belling K, Bork-Jensen J, Huang S, Als TD, Li S, Yadav R, Rubio-García A, Lescai F, Demontis D, Rao J, Ye W, Mailund T, Friborg RM, Pedersen CN, Xu R, Sun J, Liu H, Wang O, Cheng X, Flores D, Rydza E, Rapacki K, Damm Sørensen J, Chmura P, Westergaard D, Dworzynski P, Sørensen TI, Lund O, Hansen T, Xu X, Li N, Bolund L, Pedersen O, Eiberg H, Krogh A, Børglum AD, Brunak S, Kristiansen K, Schierup MH, Wang J, Gupta R, Villesen P, Rasmussen S.

Nat Commun. 2015 Jan 19;6:5969. doi: 10.1038/ncomms6969.

32.

Bayesian transcriptome assembly.

Maretty L, Sibbesen JA, Krogh A.

Genome Biol. 2014;15(10):501.

33.

SNPest: a probabilistic graphical model for estimating genotypes.

Lindgreen S, Krogh A, Pedersen JS.

BMC Res Notes. 2014 Oct 7;7:698. doi: 10.1186/1756-0500-7-698.

34.

Adaptations to a subterranean environment and longevity revealed by the analysis of mole rat genomes.

Fang X, Seim I, Huang Z, Gerashchenko MV, Xiong Z, Turanov AA, Zhu Y, Lobanov AV, Fan D, Yim SH, Yao X, Ma S, Yang L, Lee SG, Kim EB, Bronson RT, Šumbera R, Buffenstein R, Zhou X, Krogh A, Park TJ, Zhang G, Wang J, Gladyshev VN.

Cell Rep. 2014 Sep 11;8(5):1354-64. doi: 10.1016/j.celrep.2014.07.030. Epub 2014 Aug 28.

35.

Acute-phase responses in healthy and diseased rhesus macaques (Macaca mulatta).

Krogh AK, Lundsgaard JF, Bakker J, Langermans JA, Verreck FA, Kjelgaard-Hansen M, Jacobsen S, Bertelsen MF.

J Zoo Wildl Med. 2014 Jun;45(2):306-14.

PMID:
25000691
36.

Genome-wide adaptive complexes to underground stresses in blind mole rats Spalax.

Fang X, Nevo E, Han L, Levanon EY, Zhao J, Avivi A, Larkin D, Jiang X, Feranchuk S, Zhu Y, Fishman A, Feng Y, Sher N, Xiong Z, Hankeln T, Huang Z, Gorbunova V, Zhang L, Zhao W, Wildman DE, Xiong Y, Gudkov A, Zheng Q, Rechavi G, Liu S, Bazak L, Chen J, Knisbacher BA, Lu Y, Shams I, Gajda K, Farré M, Kim J, Lewin HA, Ma J, Band M, Bicker A, Kranz A, Mattheus T, Schmidt H, Seluanov A, Azpurua J, McGowen MR, Ben Jacob E, Li K, Peng S, Zhu X, Liao X, Li S, Krogh A, Zhou X, Brodsky L, Wang J.

Nat Commun. 2014 Jun 3;5:3966. doi: 10.1038/ncomms4966. Erratum in: Nat Commun. 2015;6:8051.

PMID:
24892994
37.

Alternative polyadenylation of tumor suppressor genes in small intestinal neuroendocrine tumors.

Rehfeld A, Plass M, Døssing K, Knigge U, Kjær A, Krogh A, Friis-Hansen L.

Front Endocrinol (Lausanne). 2014 Apr 15;5:46. doi: 10.3389/fendo.2014.00046. eCollection 2014.

38.

Adaptable probabilistic mapping of short reads using position specific scoring matrices.

Kerpedjiev P, Frellsen J, Lindgreen S, Krogh A.

BMC Bioinformatics. 2014 Apr 9;15:100. doi: 10.1186/1471-2105-15-100.

39.

Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization.

Qin C, Yu C, Shen Y, Fang X, Chen L, Min J, Cheng J, Zhao S, Xu M, Luo Y, Yang Y, Wu Z, Mao L, Wu H, Ling-Hu C, Zhou H, Lin H, González-Morales S, Trejo-Saavedra DL, Tian H, Tang X, Zhao M, Huang Z, Zhou A, Yao X, Cui J, Li W, Chen Z, Feng Y, Niu Y, Bi S, Yang X, Li W, Cai H, Luo X, Montes-Hernández S, Leyva-González MA, Xiong Z, He X, Bai L, Tan S, Tang X, Liu D, Liu J, Zhang S, Chen M, Zhang L, Zhang L, Zhang Y, Liao W, Zhang Y, Wang M, Lv X, Wen B, Liu H, Luan H, Zhang Y, Yang S, Wang X, Xu J, Li X, Li S, Wang J, Palloix A, Bosland PW, Li Y, Krogh A, Rivera-Bustamante RF, Herrera-Estrella L, Yin Y, Yu J, Hu K, Zhang Z.

Proc Natl Acad Sci U S A. 2014 Apr 8;111(14):5135-40. doi: 10.1073/pnas.1400975111. Epub 2014 Mar 3.

40.

Exercise induced hypercoagulability, increased von Willebrand factor and decreased thyroid hormone concentrations in sled dogs.

Krogh AK, Legind P, Kjelgaard-Hansen M, Bochsen L, Kristensen AT.

Acta Vet Scand. 2014 Feb 7;56:11. doi: 10.1186/1751-0147-56-11.

41.

Comparing cancer vs normal gene expression profiles identifies new disease entities and common transcriptional programs in AML patients.

Rapin N, Bagger FO, Jendholm J, Mora-Jensen H, Krogh A, Kohlmann A, Thiede C, Borregaard N, Bullinger L, Winther O, Theilgaard-Mönch K, Porse BT.

Blood. 2014 Feb 6;123(6):894-904. doi: 10.1182/blood-2013-02-485771. Epub 2013 Dec 20.

42.

Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome.

Pedersen JS, Valen E, Velazquez AM, Parker BJ, Rasmussen M, Lindgreen S, Lilje B, Tobin DJ, Kelly TK, Vang S, Andersson R, Jones PA, Hoover CA, Tikhonov A, Prokhortchouk E, Rubin EM, Sandelin A, Gilbert MT, Krogh A, Willerslev E, Orlando L.

Genome Res. 2014 Mar;24(3):454-66. doi: 10.1101/gr.163592.113. Epub 2013 Dec 3.

43.

Loss of miR-10a activates lpo and collaborates with activated Wnt signaling in inducing intestinal neoplasia in female mice.

Stadthagen G, Tehler D, Høyland-Kroghsbo NM, Wen J, Krogh A, Jensen KT, Santoni-Rugiu E, Engelholm LH, Lund AH.

PLoS Genet. 2013 Oct;9(10):e1003913. doi: 10.1371/journal.pgen.1003913. Epub 2013 Oct 24.

44.

A short-read multiplex sequencing method for reliable, cost-effective and high-throughput genotyping in large-scale studies.

Cao H, Wang Y, Zhang W, Chai X, Zhang X, Chen S, Yang F, Zhang C, Guo Y, Liu Y, Tang Z, Chen C, Xue Y, Zhen H, Xu Y, Rao B, Liu T, Zhao M, Zhang W, Li Y, Zhang X, Tellier LC, Krogh A, Kristiansen K, Wang J, Li J.

Hum Mutat. 2013 Dec;34(12):1715-20. doi: 10.1002/humu.22439. Epub 2013 Oct 7. Erratum in: Hum Mutat. 2014 Feb;35(2):270.

PMID:
24014314
45.

Genome analysis reveals insights into physiology and longevity of the Brandt's bat Myotis brandtii.

Seim I, Fang X, Xiong Z, Lobanov AV, Huang Z, Ma S, Feng Y, Turanov AA, Zhu Y, Lenz TL, Gerashchenko MV, Fan D, Hee Yim S, Yao X, Jordan D, Xiong Y, Ma Y, Lyapunov AN, Chen G, Kulakova OI, Sun Y, Lee SG, Bronson RT, Moskalev AA, Sunyaev SR, Zhang G, Krogh A, Wang J, Gladyshev VN.

Nat Commun. 2013;4:2212. doi: 10.1038/ncomms3212.

46.

On the accuracy of short read mapping.

Menzel P, Frellsen J, Plass M, Rasmussen SH, Krogh A.

Methods Mol Biol. 2013;1038:39-59. doi: 10.1007/978-1-62703-514-9_3.

PMID:
23872968
47.

Reconstructing genome evolution in historic samples of the Irish potato famine pathogen.

Martin MD, Cappellini E, Samaniego JA, Zepeda ML, Campos PF, Seguin-Orlando A, Wales N, Orlando L, Ho SY, Dietrich FS, Mieczkowski PA, Heitman J, Willerslev E, Krogh A, Ristaino JB, Gilbert MT.

Nat Commun. 2013;4:2172. doi: 10.1038/ncomms3172.

48.

Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse.

Orlando L, Ginolhac A, Zhang G, Froese D, Albrechtsen A, Stiller M, Schubert M, Cappellini E, Petersen B, Moltke I, Johnson PL, Fumagalli M, Vilstrup JT, Raghavan M, Korneliussen T, Malaspinas AS, Vogt J, Szklarczyk D, Kelstrup CD, Vinther J, Dolocan A, Stenderup J, Velazquez AM, Cahill J, Rasmussen M, Wang X, Min J, Zazula GD, Seguin-Orlando A, Mortensen C, Magnussen K, Thompson JF, Weinstock J, Gregersen K, Røed KH, Eisenmann V, Rubin CJ, Miller DC, Antczak DF, Bertelsen MF, Brunak S, Al-Rasheid KA, Ryder O, Andersson L, Mundy J, Krogh A, Gilbert MT, Kjær K, Sicheritz-Ponten T, Jensen LJ, Olsen JV, Hofreiter M, Nielsen R, Shapiro B, Wang J, Willerslev E.

Nature. 2013 Jul 4;499(7456):74-8. doi: 10.1038/nature12323. Epub 2013 Jun 26.

PMID:
23803765
49.

cWords - systematic microRNA regulatory motif discovery from mRNA expression data.

Rasmussen SH, Jacobsen A, Krogh A.

Silence. 2013 May 20;4(1):2. doi: 10.1186/1758-907X-4-2.

50.

Alterations in polyadenylation and its implications for endocrine disease.

Rehfeld A, Plass M, Krogh A, Friis-Hansen L.

Front Endocrinol (Lausanne). 2013 May 8;4:53. doi: 10.3389/fendo.2013.00053. eCollection 2013.

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