Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 45

1.

MUC20 expression marks the receptive phase of the human endometrium.

Stepanjuk A, Koel M, Pook M, Saare M, Jääger K, Peters M, Krjutškov K, Ingerpuu S, Salumets A.

Reprod Biomed Online. 2019 May 11. pii: S1472-6483(19)30538-3. doi: 10.1016/j.rbmo.2019.05.004. [Epub ahead of print]

PMID:
31519421
2.

Guide for library design and bias correction for large-scale transcriptome studies using highly multiplexed RNAseq methods.

Katayama S, Skoog T, Söderhäll C, Einarsdottir E, Krjutškov K, Kere J.

BMC Bioinformatics. 2019 Aug 13;20(1):418. doi: 10.1186/s12859-019-3017-9.

3.

Computational framework for targeted high-coverage sequencing based NIPT.

Teder H, Paluoja P, Rekker K, Salumets A, Krjutškov K, Palta P.

PLoS One. 2019 Jul 8;14(7):e0209139. doi: 10.1371/journal.pone.0209139. eCollection 2019.

4.

Gain-of-function CEBPE mutation causes noncanonical autoinflammatory inflammasomopathy.

Göös H, Fogarty CL, Sahu B, Plagnol V, Rajamäki K, Nurmi K, Liu X, Einarsdottir E, Jouppila A, Pettersson T, Vihinen H, Krjutskov K, Saavalainen P, Järvinen A, Muurinen M, Greco D, Scala G, Curtis J, Nordström D, Flaumenhaft R, Vaarala O, Kovanen PE, Keskitalo S, Ranki A, Kere J, Lehto M, Notarangelo LD, Nejentsev S, Eklund KK, Varjosalo M, Taipale J, Seppänen MRJ.

J Allergy Clin Immunol. 2019 Jun 13. pii: S0091-6749(19)30762-6. doi: 10.1016/j.jaci.2019.06.003. [Epub ahead of print]

5.

Pleomorphic Adenoma Gene 1 Is Needed For Timely Zygotic Genome Activation and Early Embryo Development.

Madissoon E, Damdimopoulos A, Katayama S, Krjutškov K, Einarsdottir E, Mamia K, De Groef B, Hovatta O, Kere J, Damdimopoulou P.

Sci Rep. 2019 Jun 10;9(1):8411. doi: 10.1038/s41598-019-44882-0.

6.

A molecular tool for menstrual cycle phase dating of endometrial samples in endometriosis transcriptome studies†.

Saare M, Laisk T, Teder H, Paluoja P, Palta P, Koel M, Kirss F, Karro H, Sõritsa D, Salumets A, Krjutškov K, Peters M.

Biol Reprod. 2019 Jul 1;101(1):1-3. doi: 10.1093/biolre/ioz072. No abstract available.

PMID:
31004479
7.

Impact of polyols on Oral microbiome of Estonian schoolchildren.

Štšepetova J, Truu J, Runnel R, Nõmmela R, Saag M, Olak J, Nõlvak H, Preem JK, Oopkaup K, Krjutškov K, Honkala E, Honkala S, Mäkinen K, Mäkinen PL, Vahlberg T, Vermeiren J, Bosscher D, de Cock P, Mändar R.

BMC Oral Health. 2019 Apr 18;19(1):60. doi: 10.1186/s12903-019-0747-z.

8.

Delineating the Healthy Human Skin UV Response and Early Induction of Interferon Pathway in Cutaneous Lupus Erythematosus.

Katayama S, Panelius J, Koskenmies S, Skoog T, Mähönen K, Kisand K, Bondet V, Duffy D, Krjutškov K, Kere J, Ranki A.

J Invest Dermatol. 2019 Sep;139(9):2058-2061.e4. doi: 10.1016/j.jid.2019.02.035. Epub 2019 Apr 8. No abstract available.

PMID:
30974166
9.

A preliminary transcriptome analysis suggests a transitory effect of vitamin D on mitochondrial function in obese young Finnish subjects.

Einarsdottir E, Pekkinen M, Krjutškov K, Katayama S, Kere J, Mäkitie O, Viljakainen H.

Endocr Connect. 2019 May 1;8(5):559-570. doi: 10.1530/EC-18-0537.

10.

TAC-seq: targeted DNA and RNA sequencing for precise biomarker molecule counting.

Teder H, Koel M, Paluoja P, Jatsenko T, Rekker K, Laisk-Podar T, Kukuškina V, Velthut-Meikas A, Fjodorova O, Peters M, Kere J, Salumets A, Palta P, Krjutškov K.

NPJ Genom Med. 2018 Dec 18;3:34. doi: 10.1038/s41525-018-0072-5. eCollection 2018.

11.

Endometrial receptivity revisited: endometrial transcriptome adjusted for tissue cellular heterogeneity.

Suhorutshenko M, Kukushkina V, Velthut-Meikas A, Altmäe S, Peters M, Mägi R, Krjutškov K, Koel M, Codoñer FM, Martinez-Blanch JF, Vilella F, Simón C, Salumets A, Laisk T.

Hum Reprod. 2018 Nov 1;33(11):2074-2086. doi: 10.1093/humrep/dey301.

PMID:
30295736
12.

Comprehensive RNA-Sequencing Analysis in Serum and Muscle Reveals Novel Small RNA Signatures with Biomarker Potential for DMD.

Coenen-Stass AML, Sork H, Gatto S, Godfrey C, Bhomra A, Krjutškov K, Hart JR, Westholm JO, O'Donovan L, Roos A, Lochmüller H, Puri PL, El Andaloussi S, Wood MJA, Roberts TC.

Mol Ther Nucleic Acids. 2018 Dec 7;13:1-15. doi: 10.1016/j.omtn.2018.08.005. Epub 2018 Aug 17.

13.

MANF protects human pancreatic beta cells against stress-induced cell death.

Hakonen E, Chandra V, Fogarty CL, Yu NY, Ustinov J, Katayama S, Galli E, Danilova T, Lindholm P, Vartiainen A, Einarsdottir E, Krjutškov K, Kere J, Saarma M, Lindahl M, Otonkoski T.

Diabetologia. 2018 Oct;61(10):2202-2214. doi: 10.1007/s00125-018-4687-y. Epub 2018 Jul 21.

14.

Heterogeneity and interplay of the extracellular vesicle small RNA transcriptome and proteome.

Sork H, Corso G, Krjutskov K, Johansson HJ, Nordin JZ, Wiklander OPB, Lee YXF, Westholm JO, Lehtiö J, Wood MJA, Mäger I, El Andaloussi S.

Sci Rep. 2018 Jul 17;8(1):10813. doi: 10.1038/s41598-018-28485-9.

15.

Human pluripotent reprogramming with CRISPR activators.

Weltner J, Balboa D, Katayama S, Bespalov M, Krjutškov K, Jouhilahti EM, Trokovic R, Kere J, Otonkoski T.

Nat Commun. 2018 Jul 6;9(1):2643. doi: 10.1038/s41467-018-05067-x.

16.

Mlh1 deficiency in normal mouse colon mucosa associates with chromosomally unstable colon cancer.

Pussila M, Törönen P, Einarsdottir E, Katayama S, Krjutškov K, Holm L, Kere J, Peltomäki P, Mäkinen MJ, Linden J, Nyström M.

Carcinogenesis. 2018 May 28;39(6):788-797. doi: 10.1093/carcin/bgy056.

17.

NIPTmer: rapid k-mer-based software package for detection of fetal aneuploidies.

Sauk M, Žilina O, Kurg A, Ustav EL, Peters M, Paluoja P, Roost AM, Teder H, Palta P, Brison N, Vermeesch JR, Krjutškov K, Salumets A, Kaplinski L.

Sci Rep. 2018 Apr 4;8(1):5616. doi: 10.1038/s41598-018-23589-8.

18.

Meta-signature of human endometrial receptivity: a meta-analysis and validation study of transcriptomic biomarkers.

Altmäe S, Koel M, Võsa U, Adler P, Suhorutšenko M, Laisk-Podar T, Kukushkina V, Saare M, Velthut-Meikas A, Krjutškov K, Aghajanova L, Lalitkumar PG, Gemzell-Danielsson K, Giudice L, Simón C, Salumets A.

Sci Rep. 2017 Aug 30;7(1):10077. doi: 10.1038/s41598-017-10098-3.

19.

Optimizing bone morphogenic protein 4-mediated human embryonic stem cell differentiation into trophoblast-like cells using fibroblast growth factor 2 and transforming growth factor-β/activin/nodal signalling inhibition.

Koel M, Võsa U, Krjutškov K, Einarsdottir E, Kere J, Tapanainen J, Katayama S, Ingerpuu S, Jaks V, Stenman UH, Lundin K, Tuuri T, Salumets A.

Reprod Biomed Online. 2017 Sep;35(3):253-263. doi: 10.1016/j.rbmo.2017.06.003. Epub 2017 Jun 12.

PMID:
28647356
20.

Estrogen receptor β, a regulator of androgen receptor signaling in the mouse ventral prostate.

Wu WF, Maneix L, Insunza J, Nalvarte I, Antonson P, Kere J, Yu NY, Tohonen V, Katayama S, Einarsdottir E, Krjutskov K, Dai YB, Huang B, Su W, Warner M, Gustafsson JÅ.

Proc Natl Acad Sci U S A. 2017 May 9;114(19):E3816-E3822. doi: 10.1073/pnas.1702211114. Epub 2017 Apr 24.

21.

Comprehensive mapping of the effects of azacitidine on DNA methylation, repressive/permissive histone marks and gene expression in primary cells from patients with MDS and MDS-related disease.

Tobiasson M, Abdulkadir H, Lennartsson A, Katayama S, Marabita F, De Paepe A, Karimi M, Krjutskov K, Einarsdottir E, Grövdal M, Jansson M, Ben Azenkoud A, Corddedu L, Lehmann S, Ekwall K, Kere J, Hellström-Lindberg E, Ungerstedt J.

Oncotarget. 2017 Apr 25;8(17):28812-28825. doi: 10.18632/oncotarget.15807.

22.

Ketogenic diet attenuates hepatopathy in mouse model of respiratory chain complex III deficiency caused by a Bcs1l mutation.

Purhonen J, Rajendran J, Mörgelin M, Uusi-Rauva K, Katayama S, Krjutskov K, Einarsdottir E, Velagapudi V, Kere J, Jauhiainen M, Fellman V, Kallijärvi J.

Sci Rep. 2017 Apr 19;7(1):957. doi: 10.1038/s41598-017-01109-4.

23.

Damaging heterozygous mutations in NFKB1 lead to diverse immunologic phenotypes.

Kaustio M, Haapaniemi E, Göös H, Hautala T, Park G, Syrjänen J, Einarsdottir E, Sahu B, Kilpinen S, Rounioja S, Fogarty CL, Glumoff V, Kulmala P, Katayama S, Tamene F, Trotta L, Morgunova E, Krjutškov K, Nurmi K, Eklund K, Lagerstedt A, Helminen M, Martelius T, Mustjoki S, Taipale J, Saarela J, Kere J, Varjosalo M, Seppänen M.

J Allergy Clin Immunol. 2017 Sep;140(3):782-796. doi: 10.1016/j.jaci.2016.10.054. Epub 2017 Jan 21.

PMID:
28115215
24.

Combined immunodeficiency and hypoglycemia associated with mutations in hypoxia upregulated 1.

Haapaniemi EM, Fogarty CL, Keskitalo S, Katayama S, Vihinen H, Ilander M, Mustjoki S, Krjutškov K, Lehto M, Hautala T, Eriksson O, Jokitalo E, Velagapudi V, Varjosalo M, Seppänen M, Kere J.

J Allergy Clin Immunol. 2017 Apr;139(4):1391-1393.e11. doi: 10.1016/j.jaci.2016.09.050. Epub 2016 Nov 29. No abstract available.

25.

Corrigendum: Characterization and target genes of nine human PRD-like homeobox domain genes expressed exclusively in early embryos.

Madissoon E, Jouhilahti EM, Vesterlund L, Töhönen V, Krjutškov K, Petropoulos S, Einarsdottir E, Linnarsson S, Lanner F, Månsson R, Hovatta O, Bürglin TR, Katayama S, Kere J.

Sci Rep. 2016 Sep 2;6:32053. doi: 10.1038/srep32053. No abstract available.

26.

The human PRD-like homeobox gene LEUTX has a central role in embryo genome activation.

Jouhilahti EM, Madissoon E, Vesterlund L, Töhönen V, Krjutškov K, Plaza Reyes A, Petropoulos S, Månsson R, Linnarsson S, Bürglin T, Lanner F, Hovatta O, Katayama S, Kere J.

Development. 2016 Oct 1;143(19):3459-3469. Epub 2016 Aug 30.

27.

Globin mRNA reduction for whole-blood transcriptome sequencing.

Krjutškov K, Koel M, Roost AM, Katayama S, Einarsdottir E, Jouhilahti EM, Söderhäll C, Jaakma Ü, Plaas M, Vesterlund L, Lohi H, Salumets A, Kere J.

Sci Rep. 2016 Aug 12;6:31584. doi: 10.1038/srep31584.

28.

Characterization and target genes of nine human PRD-like homeobox domain genes expressed exclusively in early embryos.

Madissoon E, Jouhilahti EM, Vesterlund L, Töhönen V, Krjutškov K, Petropoulos S, Einarsdottir E, Linnarsson S, Lanner F, Månsson R, Hovatta O, Bürglin TR, Katayama S, Kere J.

Sci Rep. 2016 Jul 14;6:28995. doi: 10.1038/srep28995. Erratum in: Sci Rep. 2016 Sep 02;6:32053.

29.

Gene-Expression Profiling Suggests Impaired Signaling via the Interferon Pathway in Cstb-/- Microglia.

Körber I, Katayama S, Einarsdottir E, Krjutškov K, Hakala P, Kere J, Lehesjoki AE, Joensuu T.

PLoS One. 2016 Jun 29;11(6):e0158195. doi: 10.1371/journal.pone.0158195. eCollection 2016.

30.

The pruritus- and TH2-associated cytokine IL-31 promotes growth of sensory nerves.

Feld M, Garcia R, Buddenkotte J, Katayama S, Lewis K, Muirhead G, Hevezi P, Plesser K, Schrumpf H, Krjutskov K, Sergeeva O, Müller HW, Tsoka S, Kere J, Dillon SR, Steinhoff M, Homey B.

J Allergy Clin Immunol. 2016 Aug;138(2):500-508.e24. doi: 10.1016/j.jaci.2016.02.020. Epub 2016 Apr 6.

PMID:
27212086
31.

Single-cell transcriptome analysis of endometrial tissue.

Krjutškov K, Katayama S, Saare M, Vera-Rodriguez M, Lubenets D, Samuel K, Laisk-Podar T, Teder H, Einarsdottir E, Salumets A, Kere J.

Hum Reprod. 2016 Apr;31(4):844-53. doi: 10.1093/humrep/dew008. Epub 2016 Feb 13.

32.

Complementary seminovaginal microbiome in couples.

Mändar R, Punab M, Borovkova N, Lapp E, Kiiker R, Korrovits P, Metspalu A, Krjutškov K, Nõlvak H, Preem JK, Oopkaup K, Salumets A, Truu J.

Res Microbiol. 2015 Jun;166(5):440-447. doi: 10.1016/j.resmic.2015.03.009. Epub 2015 Apr 11.

PMID:
25869222
33.

Whole-exome sequencing identifies a polymorphism in the BMP5 gene associated with SSRI treatment response in major depression.

Tammiste A, Jiang T, Fischer K, Mägi R, Krjutškov K, Pettai K, Esko T, Li Y, Tansey KE, Carroll LS, Uher R, McGuffin P, Võsa U, Tšernikova N, Saria A, Ng PC, Eller T, Vasar V, Nutt DJ, Maron E, Wang J, Metspalu A.

J Psychopharmacol. 2013 Oct;27(10):915-20. doi: 10.1177/0269881113499829. Epub 2013 Aug 7.

PMID:
23926243
34.

Tissue-specific mitochondrial heteroplasmy at position 16,093 within the same individual.

Krjutškov K, Koltšina M, Grand K, Võsa U, Sauk M, Tõnisson N, Salumets A.

Curr Genet. 2014 Feb;60(1):11-6. doi: 10.1007/s00294-013-0398-6. Epub 2013 Jul 11.

35.

Non-syndromic tooth agenesis associated with a nonsense mutation in ectodysplasin-A (EDA).

Nikopensius T, Annilo T, Jagomägi T, Gilissen C, Kals M, Krjutškov K, Mägi R, Eelmets M, Gerst-Talas U, Remm M, Saag M, Hoischen A, Metspalu A.

J Dent Res. 2013 Jun;92(6):507-11. doi: 10.1177/0022034513487210. Epub 2013 Apr 19.

PMID:
23603338
36.

A novel amplification strategy for genotyping with liquid chromatography-electrospray ionization mass spectrometry.

Beer B, Krjutškov K, Erb R, Viltrop T, Oberacher H.

Analyst. 2012 Nov 21;137(22):5325-33. doi: 10.1039/c2an35440c.

PMID:
23034565
37.

Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.

Morris AP, Voight BF, Teslovich TM, Ferreira T, Segrè AV, Steinthorsdottir V, Strawbridge RJ, Khan H, Grallert H, Mahajan A, Prokopenko I, Kang HM, Dina C, Esko T, Fraser RM, Kanoni S, Kumar A, Lagou V, Langenberg C, Luan J, Lindgren CM, Müller-Nurasyid M, Pechlivanis S, Rayner NW, Scott LJ, Wiltshire S, Yengo L, Kinnunen L, Rossin EJ, Raychaudhuri S, Johnson AD, Dimas AS, Loos RJ, Vedantam S, Chen H, Florez JC, Fox C, Liu CT, Rybin D, Couper DJ, Kao WH, Li M, Cornelis MC, Kraft P, Sun Q, van Dam RM, Stringham HM, Chines PS, Fischer K, Fontanillas P, Holmen OL, Hunt SE, Jackson AU, Kong A, Lawrence R, Meyer J, Perry JR, Platou CG, Potter S, Rehnberg E, Robertson N, Sivapalaratnam S, Stančáková A, Stirrups K, Thorleifsson G, Tikkanen E, Wood AR, Almgren P, Atalay M, Benediktsson R, Bonnycastle LL, Burtt N, Carey J, Charpentier G, Crenshaw AT, Doney AS, Dorkhan M, Edkins S, Emilsson V, Eury E, Forsen T, Gertow K, Gigante B, Grant GB, Groves CJ, Guiducci C, Herder C, Hreidarsson AB, Hui J, James A, Jonsson A, Rathmann W, Klopp N, Kravic J, Krjutškov K, Langford C, Leander K, Lindholm E, Lobbens S, Männistö S, Mirza G, Mühleisen TW, Musk B, Parkin M, Rallidis L, Saramies J, Sennblad B, Shah S, Sigurðsson G, Silveira A, Steinbach G, Thorand B, Trakalo J, Veglia F, Wennauer R, Winckler W, Zabaneh D, Campbell H, van Duijn C, Uitterlinden AG, Hofman A, Sijbrands E, Abecasis GR, Owen KR, Zeggini E, Trip MD, Forouhi NG, Syvänen AC, Eriksson JG, Peltonen L, Nöthen MM, Balkau B, Palmer CN, Lyssenko V, Tuomi T, Isomaa B, Hunter DJ, Qi L; Wellcome Trust Case Control Consortium; Meta-Analyses of Glucose and Insulin-related traits Consortium (MAGIC) Investigators; Genetic Investigation of ANthropometric Traits (GIANT) Consortium; Asian Genetic Epidemiology Network–Type 2 Diabetes (AGEN-T2D) Consortium; South Asian Type 2 Diabetes (SAT2D) Consortium, Shuldiner AR, Roden M, Barroso I, Wilsgaard T, Beilby J, Hovingh K, Price JF, Wilson JF, Rauramaa R, Lakka TA, Lind L, Dedoussis G, Njølstad I, Pedersen NL, Khaw KT, Wareham NJ, Keinanen-Kiukaanniemi SM, Saaristo TE, Korpi-Hyövälti E, Saltevo J, Laakso M, Kuusisto J, Metspalu A, Collins FS, Mohlke KL, Bergman RN, Tuomilehto J, Boehm BO, Gieger C, Hveem K, Cauchi S, Froguel P, Baldassarre D, Tremoli E, Humphries SE, Saleheen D, Danesh J, Ingelsson E, Ripatti S, Salomaa V, Erbel R, Jöckel KH, Moebus S, Peters A, Illig T, de Faire U, Hamsten A, Morris AD, Donnelly PJ, Frayling TM, Hattersley AT, Boerwinkle E, Melander O, Kathiresan S, Nilsson PM, Deloukas P, Thorsteinsdottir U, Groop LC, Stefansson K, Hu F, Pankow JS, Dupuis J, Meigs JB, Altshuler D, Boehnke M, McCarthy MI; DIAbetes Genetics Replication And Meta-analysis (DIAGRAM) Consortium.

Nat Genet. 2012 Sep;44(9):981-90. doi: 10.1038/ng.2383. Epub 2012 Aug 12.

38.

Variation in FGF1, FOXE1, and TIMP2 genes is associated with nonsyndromic cleft lip with or without cleft palate.

Nikopensius T, Kempa I, Ambrozaitytė L, Jagomägi T, Saag M, Matulevičienė A, Utkus A, Krjutškov K, Tammekivi V, Piekuse L, Akota I, Barkane B, Krumina A, Klovins J, Lace B, Kučinskas V, Metspalu A.

Birth Defects Res A Clin Mol Teratol. 2011 Apr;91(4):218-25. doi: 10.1002/bdra.20791. Epub 2011 Apr 1.

PMID:
21462296
39.

Genetic variants in COL2A1, COL11A2, and IRF6 contribute risk to nonsyndromic cleft palate.

Nikopensius T, Jagomägi T, Krjutskov K, Tammekivi V, Saag M, Prane I, Piekuse L, Akota I, Barkane B, Krumina A, Ambrozaityte L, Matuleviciene A, Kucinskiene ZA, Lace B, Kucinskas V, Metspalu A.

Birth Defects Res A Clin Mol Teratol. 2010 Sep;88(9):748-56. doi: 10.1002/bdra.20700.

PMID:
20672350
40.

MTHFR and MSX1 contribute to the risk of nonsyndromic cleft lip/palate.

Jagomägi T, Nikopensius T, Krjutskov K, Tammekivi V, Viltrop T, Saag M, Metspalu A.

Eur J Oral Sci. 2010 Jun;118(3):213-20. doi: 10.1111/j.1600-0722.2010.00729.x.

PMID:
20572854
41.

Fibrinogen beta variants confer protection against coronary artery disease in a Greek case-control study.

Theodoraki EV, Nikopensius T, Suhorutsenko J, Peppes V, Fili P, Kolovou G, Papamikos V, Richter D, Zakopoulos N, Krjutskov K, Metspalu A, Dedoussis GV.

BMC Med Genet. 2010 Feb 18;11:28. doi: 10.1186/1471-2350-11-28.

42.

Evaluation of the 124-plex SNP typing microarray for forensic testing.

Krjutskov K, Viltrop T, Palta P, Metspalu E, Tamm E, Suvi S, Sak K, Merilo A, Sork H, Teek R, Nikopensius T, Kivisild T, Metspalu A.

Forensic Sci Int Genet. 2009 Dec;4(1):43-8. doi: 10.1016/j.fsigen.2009.04.007. Epub 2009 May 15.

PMID:
19948333
43.

Comparison of DNA extraction methods for multiplex polymerase chain reaction.

Viltrop T, Krjutskov K, Palta P, Metspalu A.

Anal Biochem. 2010 Mar 15;398(2):260-2. doi: 10.1016/j.ab.2009.11.026. Epub 2009 Nov 20.

PMID:
19932073
44.

Analysis of allele and haplotype diversity across 25 genomic regions in three Eastern European populations.

Khrunin A, Mihailov E, Nikopensius T, Krjutskov K, Limborska S, Metspalu A.

Hum Hered. 2009;68(1):35-44. doi: 10.1159/000210447. Epub 2009 Apr 1.

45.

Development of a single tube 640-plex genotyping method for detection of nucleic acid variations on microarrays.

Krjutskov K, Andreson R, Mägi R, Nikopensius T, Khrunin A, Mihailov E, Tammekivi V, Sork H, Remm M, Metspalu A.

Nucleic Acids Res. 2008 Jul;36(12):e75. doi: 10.1093/nar/gkn357. Epub 2008 Jun 5.

Supplemental Content

Loading ...
Support Center