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Items: 1 to 50 of 57

1.

Closing the DNA replication cycle: from simple circular molecules to supercoiled and knotted DNA catenanes.

Schvartzman JB, Hernández P, Krimer DB, Dorier J, Stasiak A.

Nucleic Acids Res. 2019 Jul 5. pii: gkz586. doi: 10.1093/nar/gkz586. [Epub ahead of print]

PMID:
31276584
2.

CRISPR/Cas9-mediated deletion of the Wiskott-Aldrich syndrome locus causes actin cytoskeleton disorganization in murine erythroleukemia cells.

Fernández-Calleja V, Fernández-Nestosa MJ, Hernández P, Schvartzman JB, Krimer DB.

PeerJ. 2019 Jan 16;7:e6284. doi: 10.7717/peerj.6284. eCollection 2019.

3.

Analysis of DNA topology of EBV minichromosomes in HEK 293 cells.

Castán A, Fernández-Calleja V, Hernández P, Krimer DB, Schvartzman JB, Fernández-Nestosa MJ.

PLoS One. 2017 Nov 29;12(11):e0188172. doi: 10.1371/journal.pone.0188172. eCollection 2017.

4.

DNA Catenation Reveals the Dynamics of DNA Topology During Replication.

Castán A, Hernández P, Krimer DB, Schvartzman JB.

Methods Mol Biol. 2018;1703:75-86. doi: 10.1007/978-1-4939-7459-7_5.

PMID:
29177734
5.

The abundance of Fob1 modulates the efficiency of rRFBs to stall replication forks.

Castán A, Hernández P, Krimer DB, Schvartzman JB.

Nucleic Acids Res. 2017 Sep 29;45(17):10089-10102. doi: 10.1093/nar/gkx655.

6.

Differential gene expression analysis by RNA-seq reveals the importance of actin cytoskeletal proteins in erythroleukemia cells.

Fernández-Calleja V, Hernández P, Schvartzman JB, García de Lacoba M, Krimer DB.

PeerJ. 2017 Jun 27;5:e3432. doi: 10.7717/peerj.3432. eCollection 2017.

7.

Direct Evidence for the Formation of Precatenanes during DNA Replication.

Cebrián J, Castán A, Martínez V, Kadomatsu-Hermosa MJ, Parra C, Fernández-Nestosa MJ, Schaerer C, Hernández P, Krimer DB, Schvartzman JB.

J Biol Chem. 2015 May 29;290(22):13725-35. doi: 10.1074/jbc.M115.642272. Epub 2015 Mar 31.

8.

Electrophoretic mobility of supercoiled, catenated and knotted DNA molecules.

Cebrián J, Kadomatsu-Hermosa MJ, Castán A, Martínez V, Parra C, Fernández-Nestosa MJ, Schaerer C, Martínez-Robles ML, Hernández P, Krimer DB, Stasiak A, Schvartzman JB.

Nucleic Acids Res. 2015 Feb 27;43(4):e24. doi: 10.1093/nar/gku1255. Epub 2014 Nov 20.

9.

Topoisomerase 2 is dispensable for the replication and segregation of small yeast artificial chromosomes (YACs).

Cebrián J, Monturus E, Martínez-Robles ML, Hernández P, Krimer DB, Schvartzman JB.

PLoS One. 2014 Aug 12;9(8):e104995. doi: 10.1371/journal.pone.0104995. eCollection 2014.

10.

DNA methylation-mediated silencing of PU.1 in leukemia cells resistant to cell differentiation.

Fernández-Nestosa MJ, Monturus E, Sánchez Z, Torres FS, Fernández AF, Fraga MF, Hernández P, Schvartzman JB, Krimer DB.

Springerplus. 2013 Aug 21;2:392. doi: 10.1186/2193-1801-2-392. eCollection 2013.

11.

Plasmid DNA topology assayed by two-dimensional agarose gel electrophoresis.

Schvartzman JB, Martínez-Robles ML, Hernández P, Krimer DB.

Methods Mol Biol. 2013;1054:121-32. doi: 10.1007/978-1-62703-565-1_7.

PMID:
23913288
12.

The benefit of DNA supercoiling during replication.

Schvartzman JB, Martínez-Robles ML, Hernández P, Krimer DB.

Biochem Soc Trans. 2013 Apr;41(2):646-51. doi: 10.1042/BST20120281. Review.

13.

2D gels and their third-dimension potential.

Schvartzman JB, Martínez-Robles ML, López V, Hernández P, Krimer DB.

Methods. 2012 Jun;57(2):170-8. doi: 10.1016/j.ymeth.2012.03.013. Epub 2012 Mar 24.

PMID:
22465282
14.

DNA replication fading as proliferating cells advance in their commitment to terminal differentiation.

Estefanía MM, Ganier O, Hernández P, Schvartzman JB, Mechali M, Krimer DB.

Sci Rep. 2012;2:279. doi: 10.1038/srep00279. Epub 2012 Feb 20.

15.

Topo IV is the topoisomerase that knots and unknots sister duplexes during DNA replication.

López V, Martínez-Robles ML, Hernández P, Krimer DB, Schvartzman JB.

Nucleic Acids Res. 2012 Apr;40(8):3563-73. doi: 10.1093/nar/gkr1237. Epub 2011 Dec 19.

16.

The fission yeast rDNA-binding protein Reb1 regulates G1 phase under nutritional stress.

Rodríguez-Sánchez L, Rodríguez-López M, García Z, Tenorio-Gómez M, Schvartzman JB, Krimer DB, Hernández P.

J Cell Sci. 2011 Jan 1;124(Pt 1):25-34. doi: 10.1242/jcs.070987. Epub 2010 Nov 30.

17.

Plasmid DNA replication and topology as visualized by two-dimensional agarose gel electrophoresis.

Schvartzman JB, Martínez-Robles ML, Hernández P, Krimer DB.

Plasmid. 2010 Jan;63(1):1-10. doi: 10.1016/j.plasmid.2009.11.001. Epub 2009 Nov 16.

PMID:
19925824
18.

Interplay of DNA supercoiling and catenation during the segregation of sister duplexes.

Martínez-Robles ML, Witz G, Hernández P, Schvartzman JB, Stasiak A, Krimer DB.

Nucleic Acids Res. 2009 Aug;37(15):5126-37. doi: 10.1093/nar/gkp530. Epub 2009 Jun 24.

19.

A redundancy of processes that cause replication fork stalling enhances recombination at two distinct sites in yeast rDNA.

Mayán-Santos MD, Martínez-Robles ML, Hernández P, Schvartzman JB, Krimer DB.

Mol Microbiol. 2008 Jul;69(2):361-75. doi: 10.1111/j.1365-2958.2008.06278.x.

20.

PU.1 is dispensable to block erythroid differentiation in Friend erythroleukemia cells.

Fernández-Nestosa MJ, Hernández P, Schvartzman JB, Krimer DB.

Leuk Res. 2008 Jan;32(1):121-30. Epub 2007 Jun 21.

PMID:
17586044
21.

Replication fork reversal occurs spontaneously after digestion but is constrained in supercoiled domains.

Fierro-Fernández M, Hernández P, Krimer DB, Schvartzman JB.

J Biol Chem. 2007 Jun 22;282(25):18190-6. Epub 2007 Apr 23.

22.

Topological locking restrains replication fork reversal.

Fierro-Fernández M, Hernández P, Krimer DB, Stasiak A, Schvartzman JB.

Proc Natl Acad Sci U S A. 2007 Jan 30;104(5):1500-5. Epub 2007 Jan 22.

23.

The mating type switch-activating protein Sap1 Is required for replication fork arrest at the rRNA genes of fission yeast.

Mejía-Ramírez E, Sánchez-Gorostiaga A, Krimer DB, Schvartzman JB, Hernández P.

Mol Cell Biol. 2005 Oct;25(19):8755-61.

24.

Protein kinase clk/STY is differentially regulated during erythroleukemia cell differentiation: a bias toward the skipped splice variant characterizes postcommitment stages.

García-Sacristán A, Fernández-Nestosa MJ, Hernández P, Schvartzman JB, Krimer DB.

Cell Res. 2005 Jul;15(7):495-503.

25.

Transcription termination factor reb1p causes two replication fork barriers at its cognate sites in fission yeast ribosomal DNA in vivo.

Sánchez-Gorostiaga A, López-Estraño C, Krimer DB, Schvartzman JB, Hernández P.

Mol Cell Biol. 2004 Jan;24(1):398-406.

26.

Developmental regulation of expression of Ran/M1 and Ran/M2 isoforms of Ran-GTPase in mouse testis.

López-Casas PP, López-Fernández LA, Párraga M, Krimer DB, del Mazo J.

Int J Dev Biol. 2003 May;47(4):307-10.

27.

Differential expression of Ran GTPase during HMBA-induced differentiation in murine erythroleukemia cells.

Vanegas N, García-Sacristán A, López-Fernández LA, Párraga M, del Mazo J, Hernández P, Schvartzman JB, Krimer DB.

Leuk Res. 2003 Jul;27(7):607-15.

PMID:
12681360
28.
29.

Knotting dynamics during DNA replication.

Olavarrieta L, Martínez-Robles ML, Hernández P, Krimer DB, Schvartzman JB.

Mol Microbiol. 2002 Nov;46(3):699-707.

30.

DNA knotting caused by head-on collision of transcription and replication.

Olavarrieta L, Hernández P, Krimer DB, Schvartzman JB.

J Mol Biol. 2002 Sep 6;322(1):1-6.

31.

Ran GTPase expression during early development of the mouse embryo.

López-Casas PP, López-Fernández LA, Krimer DB, del Mazo J.

Mech Dev. 2002 Apr;113(1):103-6.

32.

Supercoiling, knotting and replication fork reversal in partially replicated plasmids.

Olavarrieta L, Martínez-Robles ML, Sogo JM, Stasiak A, Hernández P, Krimer DB, Schvartzman JB.

Nucleic Acids Res. 2002 Feb 1;30(3):656-66.

33.

Premature termination of DNA replication in plasmids carrying two inversely oriented ColE1 origins.

Santamaría D, Hernández P, Martínez-Robles ML, Krimer DB, Schvartzman JB.

J Mol Biol. 2000 Jun 30;300(1):75-82.

PMID:
10864499
34.

Bi-directional replication and random termination.

Santamaría D, Viguera E, Martínez-Robles ML, Hyrien O, Hernández P, Krimer DB, Schvartzman JB.

Nucleic Acids Res. 2000 May 15;28(10):2099-107.

35.

Visualisation of plasmid replication intermediates containing reversed forks.

Viguera E, Hernández P, Krimer DB, Lurz R, Schvartzman JB.

Nucleic Acids Res. 2000 Jan 15;28(2):498-503.

36.

Characterization of the pea rDNA replication fork barrier: putative cis-acting and trans-acting factors.

López-Estraño C, Schvartzman JB, Krimer DB, Hernández P.

Plant Mol Biol. 1999 May;40(1):99-110.

PMID:
10394949
37.

Formation of knots in partially replicated DNA molecules.

Sogo JM, Stasiak A, Martínez-Robles ML, Krimer DB, Hernández P, Schvartzman JB.

J Mol Biol. 1999 Feb 26;286(3):637-43.

38.

DnaB helicase is unable to dissociate RNA-DNA hybrids. Its implication in the polar pausing of replication forks at ColE1 origins.

Santamaría D, de la Cueva G, Martínez-Robles ML, Krimer DB, Hernández P, Schvartzman JB.

J Biol Chem. 1998 Dec 11;273(50):33386-96.

39.

A computer model for the analysis of DNA replication intermediates by two-dimensional agarose gel electrophoresis.

Viguera E, Rodríguez A, Hernández P, Krimer DB, Trellez O, Schvartzman JB.

Gene. 1998 Sep 14;217(1-2):41-9.

PMID:
9795124
40.

Topological complexity of different populations of pBR322 as visualized by two-dimensional agarose gel electrophoresis.

Martín-Parras L, Lucas I, Martínez-Robles ML, Hernández P, Krimer DB, Hyrien O, Schvartzman JB.

Nucleic Acids Res. 1998 Jul 15;26(14):3424-32.

41.

Co-localization of polar replication fork barriers and rRNA transcription terminators in mouse rDNA.

López-estraño C, Schvartzman JB, Krimer DB, Hernández P.

J Mol Biol. 1998 Mar 27;277(2):249-56.

PMID:
9514756
42.

Developmental expression of H3.3A variant histone mRNA in mouse.

López-Fernández LA, López-Alañón DM, Castañeda V, Krimer DB, del Mazo J.

Int J Dev Biol. 1997 Oct;41(5):699-703.

43.

Cloning, sequencing and expression in MEL cells of a cDNA encoding the mouse ribosomal protein S5.

Vanegas N, Castañeda V, Santamaría D, Hernández P, Schvartzman JB, Krimer DB.

Biochim Biophys Acta. 1997 Jun 5;1357(1):1-4.

44.

H3.3A variant histone mRNA containing an alpha-globin insertion: modulated expression during mouse gametogenesis correlates with meiotic onset.

López-Alãnón DM, Lopez-Fernández LA, Castañeda V, Krimer DB, Del Mazo J.

DNA Cell Biol. 1997 May;16(5):639-44.

PMID:
9174168
45.

The ColE1 unidirectional origin acts as a polar replication fork pausing site.

Viguera E, Hernández P, Krimer DB, Boistov AS, Lurz R, Alonso JC, Schvartzman JB.

J Biol Chem. 1996 Sep 13;271(37):22414-21.

46.
47.

Replication and segregation of eukaryotic chromosomal DNA.

Schvartzman JB, Parras LM, Krimer DB.

Revis Biol Celular. 1986;10:1-130. Review.

PMID:
2829294
48.
49.
50.

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