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Items: 5


Accurate and sensitive quantification of protein-DNA binding affinity.

Rastogi C, Rube HT, Kribelbauer JF, Crocker J, Loker RE, Martini GD, Laptenko O, Freed-Pastor WA, Prives C, Stern DL, Mann RS, Bussemaker HJ.

Proc Natl Acad Sci U S A. 2018 Apr 17;115(16):E3692-E3701. doi: 10.1073/pnas.1714376115. Epub 2018 Apr 2.


A unified approach for quantifying and interpreting DNA shape readout by transcription factors.

Rube HT, Rastogi C, Kribelbauer JF, Bussemaker HJ.

Mol Syst Biol. 2018 Feb 22;14(2):e7902. doi: 10.15252/msb.20177902.


Systematic prediction of DNA shape changes due to CpG methylation explains epigenetic effects on protein-DNA binding.

Rao S, Chiu TP, Kribelbauer JF, Mann RS, Bussemaker HJ, Rohs R.

Epigenetics Chromatin. 2018 Feb 6;11(1):6. doi: 10.1186/s13072-018-0174-4.


SelexGLM differentiates androgen and glucocorticoid receptor DNA-binding preference over an extended binding site.

Zhang L, Martini GD, Rube HT, Kribelbauer JF, Rastogi C, FitzPatrick VD, Houtman JC, Bussemaker HJ, Pufall MA.

Genome Res. 2018 Jan;28(1):111-121. doi: 10.1101/gr.222844.117. Epub 2017 Dec 1.


Quantitative Analysis of the DNA Methylation Sensitivity of Transcription Factor Complexes.

Kribelbauer JF, Laptenko O, Chen S, Martini GD, Freed-Pastor WA, Prives C, Mann RS, Bussemaker HJ.

Cell Rep. 2017 Jun 13;19(11):2383-2395. doi: 10.1016/j.celrep.2017.05.069.

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