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Items: 35

1.

The horizontal gene transfer of Agrobacterium T-DNAs into the series Batatas (Genus Ipomoea) genome is not confined to hexaploid sweetpotato.

Quispe-Huamanquispe DG, Gheysen G, Yang J, Jarret R, Rossel G, Kreuze JF.

Sci Rep. 2019 Aug 29;9(1):12584. doi: 10.1038/s41598-019-48691-3.

2.

Stacking three late blight resistance genes from wild species directly into African highland potato varieties confers complete field resistance to local blight races.

Ghislain M, Byarugaba AA, Magembe E, Njoroge A, Rivera C, Román ML, Tovar JC, Gamboa S, Forbes GA, Kreuze JF, Barekye A, Kiggundu A.

Plant Biotechnol J. 2019 Jun;17(6):1119-1129. doi: 10.1111/pbi.13042. Epub 2018 Dec 21.

3.

The linear mitochondrial genome of the quarantine chytrid Synchytrium endobioticum; insights into the evolution and recent history of an obligate biotrophic plant pathogen.

van de Vossenberg BTLH, Brankovics B, Nguyen HDT, van Gent-Pelzer MPE, Smith D, Dadej K, Przetakiewicz J, Kreuze JF, Boerma M, van Leeuwen GCM, André Lévesque C, van der Lee TAJ.

BMC Evol Biol. 2018 Sep 10;18(1):136. doi: 10.1186/s12862-018-1246-6.

4.

Ortervirales: New Virus Order Unifying Five Families of Reverse-Transcribing Viruses.

Krupovic M, Blomberg J, Coffin JM, Dasgupta I, Fan H, Geering AD, Gifford R, Harrach B, Hull R, Johnson W, Kreuze JF, Lindemann D, Llorens C, Lockhart B, Mayer J, Muller E, Olszewski NE, Pappu HR, Pooggin MM, Richert-Pöggeler KR, Sabanadzovic S, Sanfaçon H, Schoelz JE, Seal S, Stavolone L, Stoye JP, Teycheney PY, Tristem M, Koonin EV, Kuhn JH.

J Virol. 2018 May 29;92(12). pii: e00515-18. doi: 10.1128/JVI.00515-18. Print 2018 Jun 15. No abstract available.

5.

Salicylic Acid Perturbs sRNA-Gibberellin Regulatory Network in Immune Response of Potato to Potato virus Y Infection.

Križnik M, Petek M, Dobnik D, Ramšak Ž, Baebler Š, Pollmann S, Kreuze JF, Žel J, Gruden K.

Front Plant Sci. 2017 Dec 22;8:2192. doi: 10.3389/fpls.2017.02192. eCollection 2017.

6.

Horizontal Gene Transfer Contributes to Plant Evolution: The Case of Agrobacterium T-DNAs.

Quispe-Huamanquispe DG, Gheysen G, Kreuze JF.

Front Plant Sci. 2017 Nov 24;8:2015. doi: 10.3389/fpls.2017.02015. eCollection 2017. Review.

7.

Utilization of engineered resistance to viruses in crops of the developing world, with emphasis on sub-Saharan Africa.

Kreuze JF, Valkonen JP.

Curr Opin Virol. 2017 Oct;26:90-97. doi: 10.1016/j.coviro.2017.07.022. Epub 2017 Aug 8. Review.

8.

Using Small RNA-seq Data to Detect siRNA Duplexes Induced by Plant Viruses.

Niu X, Sun Y, Chen Z, Li R, Padmanabhan C, Ruan J, Kreuze JF, Ling K, Fei Z, Gao S.

Genes (Basel). 2017 Jun 16;8(6). pii: E163. doi: 10.3390/genes8060163.

9.

Using Small RNA Deep Sequencing Data to Detect Human Viruses.

Wang F, Sun Y, Ruan J, Chen R, Chen X, Chen C, Kreuze JF, Fei Z, Zhu X, Gao S.

Biomed Res Int. 2016;2016:2596782. doi: 10.1155/2016/2596782. Epub 2016 Mar 15.

10.

A novel sweet potato potyvirus open reading frame (ORF) is expressed via polymerase slippage and suppresses RNA silencing.

Untiveros M, Olspert A, Artola K, Firth AE, Kreuze JF, Valkonen JP.

Mol Plant Pathol. 2016 Sep;17(7):1111-23. doi: 10.1111/mpp.12366. Epub 2016 Apr 28.

11.

The genome of cultivated sweet potato contains Agrobacterium T-DNAs with expressed genes: An example of a naturally transgenic food crop.

Kyndt T, Quispe D, Zhai H, Jarret R, Ghislain M, Liu Q, Gheysen G, Kreuze JF.

Proc Natl Acad Sci U S A. 2015 May 5;112(18):5844-9. doi: 10.1073/pnas.1419685112. Epub 2015 Apr 20.

12.

Deep sequencing of virus-derived small interfering RNAs and RNA from viral particles shows highly similar mutational landscapes of a plant virus population.

Kutnjak D, Rupar M, Gutierrez-Aguirre I, Curk T, Kreuze JF, Ravnikar M.

J Virol. 2015 May;89(9):4760-9. doi: 10.1128/JVI.03685-14. Epub 2015 Feb 11.

13.

The complete genome sequences of two isolates of potato black ringspot virus and their relationship to other isolates and nepoviruses.

Richards RS, Adams IP, Kreuze JF, De Souza J, Cuellar W, Dullemans AM, Van Der Vlugt RA, Glover R, Hany U, Dickinson M, Boonham N.

Arch Virol. 2014 Apr;159(4):811-5.

PMID:
24122155
14.

The complete nucleotide sequence of sweet potato C6 virus: a carlavirus lacking a cysteine-rich protein.

De Souza J, Fuentes S, Savenkov EI, Cuellar W, Kreuze JF.

Arch Virol. 2013 Jun;158(6):1393-6. doi: 10.1007/s00705-013-1614-x. Epub 2013 Jan 30.

PMID:
23358614
15.

Sweetpotato Viruses: 15 Years of Progress on Understanding and Managing Complex Diseases.

Clark CA, Davis JA, Abad JA, Cuellar WJ, Fuentes S, Kreuze JF, Gibson RW, Mukasa SB, Tugume AK, Tairo FD, Valkonen JPT.

Plant Dis. 2012 Feb;96(2):168-185. doi: 10.1094/PDIS-07-11-0550. No abstract available.

PMID:
30731810
16.

Complete genome sequence of a potyvirus infecting yam beans (Pachyrhizus spp.) in Peru.

Fuentes S, Heider B, Tasso RC, Romero E, Zum Felde T, Kreuze JF.

Arch Virol. 2012 Apr;157(4):773-6. doi: 10.1007/s00705-011-1214-6. Epub 2012 Jan 8.

PMID:
22227800
17.

Distinct cavemoviruses interact synergistically with sweet potato chlorotic stunt virus (genus Crinivirus) in cultivated sweet potato.

Cuellar WJ, De Souza J, Barrantes I, Fuentes S, Kreuze JF.

J Gen Virol. 2011 May;92(Pt 5):1233-43. doi: 10.1099/vir.0.029975-0. Epub 2011 Feb 9.

PMID:
21307225
18.

Sequence characterization of a Peruvian isolate of Sweet potato chlorotic stunt virus: further variability and a model for p22 acquisition.

Cuellar WJ, Cruzado RK, Fuentes S, Untiveros M, Soto M, Kreuze JF.

Virus Res. 2011 Apr;157(1):111-5. doi: 10.1016/j.virusres.2011.01.010. Epub 2011 Jan 22.

19.

RNAi-mediated resistance to diverse isolates belonging to two virus species involved in Cassava brown streak disease.

Patil BL, Ogwok E, Wagaba H, Mohammed IU, Yadav JS, Bagewadi B, Taylor NJ, Kreuze JF, Maruthi MN, Alicai T, Fauquet CM.

Mol Plant Pathol. 2011 Jan;12(1):31-41. doi: 10.1111/j.1364-3703.2010.00650.x.

20.

Elimination of antiviral defense by viral RNase III.

Cuellar WJ, Kreuze JF, Rajamäki ML, Cruzado KR, Untiveros M, Valkonen JP.

Proc Natl Acad Sci U S A. 2009 Jun 23;106(25):10354-8. doi: 10.1073/pnas.0806042106. Epub 2009 Jun 10.

21.

Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: a generic method for diagnosis, discovery and sequencing of viruses.

Kreuze JF, Perez A, Untiveros M, Quispe D, Fuentes S, Barker I, Simon R.

Virology. 2009 May 25;388(1):1-7. doi: 10.1016/j.virol.2009.03.024. Epub 2009 Apr 23.

22.

RNA silencing-mediated resistance to a crinivirus (Closteroviridae) in cultivated sweet potato (Ipomoea batatas L.) and development of sweet potato virus disease following co-infection with a potyvirus.

Kreuze JF, Klein IS, Lazaro MU, Chuquiyuri WJ, Morgan GL, Mejía PG, Ghislain M, Valkonen JP.

Mol Plant Pathol. 2008 Sep;9(5):589-98. doi: 10.1111/j.1364-3703.2008.00480.x.

23.

Biological, serological, and molecular differences among isolates of potato a potyvirus.

Rajamäki M, Merits A, Rabenstein F, Andrejeva J, Paulin L, Kekarainen T, Kreuze JF, Forster RL, Valkonen JP.

Phytopathology. 1998 Apr;88(4):311-21. doi: 10.1094/PHYTO.1998.88.4.311.

24.

Phylogenetic Analysis of 16S rRNA Genes and PCR Analysis of the nec1 Gene from Streptomyces spp. Causing Common Scab, Pitted Scab, and Netted Scab in Finland.

Kreuze JF, Suomalainen S, Paulin L, Valkonen JP.

Phytopathology. 1999 Jun;89(6):462-9. doi: 10.1094/PHYTO.1999.89.6.462.

25.

Two Serotypes of Sweetpotato feathery mottle virus in Uganda and Their Interaction with Resistant Sweetpotato Cultivars.

Karyeija RF, Kreuze JF, Gibson RW, Valkonen JP.

Phytopathology. 2000 Nov;90(11):1250-5. doi: 10.1094/PHYTO.2000.90.11.1250.

26.
27.

Family Flexiviridae: a case study in virion and genome plasticity.

Martelli GP, Adams MJ, Kreuze JF, Dolja VV.

Annu Rev Phytopathol. 2007;45:73-100. Review.

PMID:
17362202
28.

Comparative and functional genomics of closteroviruses.

Dolja VV, Kreuze JF, Valkonen JP.

Virus Res. 2006 Apr;117(1):38-51. Epub 2006 Mar 9. Review.

PMID:
16529837
29.

Viral class 1 RNase III involved in suppression of RNA silencing.

Kreuze JF, Savenkov EI, Cuellar W, Li X, Valkonen JP.

J Virol. 2005 Jun;79(11):7227-38.

30.

Some molecular characteristics of three viruses from SPVD-affected sweet potato plants in Egypt.

IsHak JA, Kreuze JF, Johansson A, Mukasa SB, Tairo F, Abo El-Abbas FM, Valkonen JP.

Arch Virol. 2003 Dec;148(12):2449-60. Epub 2003 Sep 16.

PMID:
14648298
31.

Coat protein sequence analysis reveals occurrence of new strains of Sweet potato feathery mottle virus in Uganda and Tanzania.

Mukasa SB, Tairo F, Kreuze JF, Kullaya A, Rubaihayo PR, Valkonen JP.

Virus Genes. 2003 Aug;27(1):49-56.

PMID:
12913357
33.
35.

Synergistic interactions of a potyvirus and a phloem-limited crinivirus in sweet potato plants.

Karyeija RF, Kreuze JF, Gibson RW, Valkonen JP.

Virology. 2000 Mar 30;269(1):26-36.

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