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Items: 1 to 50 of 55

1.

Standardized next-generation sequencing of immunoglobulin and T-cell receptor gene recombinations for MRD marker identification in acute lymphoblastic leukaemia; a EuroClonality-NGS validation study.

Brüggemann M, Kotrová M, Knecht H, Bartram J, Boudjogrha M, Bystry V, Fazio G, Froňková E, Giraud M, Grioni A, Hancock J, Herrmann D, Jiménez C, Krejci A, Moppett J, Reigl T, Salson M, Scheijen B, Schwarz M, Songia S, Svaton M, van Dongen JJM, Villarese P, Wakeman S, Wright G, Cazzaniga G, Davi F, García-Sanz R, Gonzalez D, Groenen PJTA, Hummel M, Macintyre EA, Stamatopoulos K, Pott C, Trka J, Darzentas N, Langerak AW; EuroClonality-NGS working group.

Leukemia. 2019 Sep;33(9):2241-2253. doi: 10.1038/s41375-019-0496-7. Epub 2019 Jun 26.

2.

Quality control and quantification in IG/TR next-generation sequencing marker identification: protocols and bioinformatic functionalities by EuroClonality-NGS.

Knecht H, Reigl T, Kotrová M, Appelt F, Stewart P, Bystry V, Krejci A, Grioni A, Pal K, Stranska K, Plevova K, Rijntjes J, Songia S, Svatoň M, Froňková E, Bartram J, Scheijen B, Herrmann D, García-Sanz R, Hancock J, Moppett J, van Dongen JJM, Cazzaniga G, Davi F, Groenen PJTA, Hummel M, Macintyre EA, Stamatopoulos K, Trka J, Langerak AW, Gonzalez D, Pott C, Brüggemann M, Darzentas N; EuroClonality-NGS Working Group.

Leukemia. 2019 Sep;33(9):2254-2265. doi: 10.1038/s41375-019-0499-4. Epub 2019 Jun 21.

3.

Lime is a new protein linking immunity and metabolism in Drosophila.

Mihajlovic Z, Tanasic D, Bajgar A, Perez-Gomez R, Steffal P, Krejci A.

Dev Biol. 2019 Aug 15;452(2):83-94. doi: 10.1016/j.ydbio.2019.05.005. Epub 2019 May 11.

PMID:
31085193
4.

Encyclopedia of CLL Subsets - a Unique Bioinformatics Tool and Database for Analysis of Subsets of Stereotypical B-Cell Receptors in CLL.

Reigl T, Stránská K, Bystrý V, Krejčí A, Grioni A, Pospíšilová Š, Darzentas N, Plevová K.

Klin Onkol. 2019 Spring;32(Supplementum1):167-170.

PMID:
31064191
5.

Copy number variation: A prognostic marker for young patients with squamous cell carcinoma of the oral tongue.

Gu X, Coates PJ, Boldrup L, Wang L, Krejci A, Hupp T, Fahraeus R, Norberg-Spaak L, Sgaramella N, Wilms T, Nylander K.

J Oral Pathol Med. 2019 Jan;48(1):24-30. doi: 10.1111/jop.12792. Epub 2018 Nov 2.

6.

GLASS: assisted and standardized assessment of gene variations from Sanger sequence trace data.

Pal K, Bystry V, Reigl T, Demko M, Krejci A, Touloumenidou T, Stalika E, Tichy B, Ghia P, Stamatopoulos K, Pospisilova S, Malcikova J, Darzentas N.

Bioinformatics. 2017 Dec 1;33(23):3802-3804. doi: 10.1093/bioinformatics/btx423.

PMID:
29036643
7.

Metabolism in time and space - exploring the frontier of developmental biology.

Krejci A, Tennessen JM.

Development. 2017 Sep 15;144(18):3193-3198. doi: 10.1242/dev.150573. Review.

8.

High resolution IgH repertoire analysis reveals fetal liver as the likely origin of life-long, innate B lymphopoiesis in humans.

Roy A, Bystry V, Bohn G, Goudevenou K, Reigl T, Papaioannou M, Krejci A, O'Byrne S, Chaidos A, Grioni A, Darzentas N, Roberts IAG, Karadimitris A.

Clin Immunol. 2017 Oct;183:8-16. doi: 10.1016/j.clim.2017.06.005. Epub 2017 Jun 20.

9.

GvL effects in T-prolymphocytic leukemia: evidence from MRD kinetics and TCR repertoire analyses.

Sellner L, Brüggemann M, Schlitt M, Knecht H, Herrmann D, Reigl T, Krejci A, Bystry V, Darzentas N, Rieger M, Dietrich S, Luft T, Ho AD, Kneba M, Dreger P.

Bone Marrow Transplant. 2017 Apr;52(4):656. doi: 10.1038/bmt.2017.12. No abstract available.

PMID:
28377595
10.

ARResT/Interrogate: an interactive immunoprofiler for IG/TR NGS data.

Bystry V, Reigl T, Krejci A, Demko M, Hanakova B, Grioni A, Knecht H, Schlitt M, Dreger P, Sellner L, Herrmann D, Pingeon M, Boudjoghra M, Rijntjes J, Pott C, Langerak AW, Groenen PJTA, Davi F, Brüggemann M, Darzentas N; EuroClonality-NGS.

Bioinformatics. 2017 Feb 1;33(3):435-437. doi: 10.1093/bioinformatics/btw634.

PMID:
28172348
11.

GvL effects in T-prolymphocytic leukemia: evidence from MRD kinetics and TCR repertoire analyses.

Sellner L, Brüggemann M, Schlitt M, Knecht H, Herrmann D, Reigl T, Krejci A, Bystry V, Darzentas N, Rieger M, Dietrich S, Luft T, Ho AD, Kneba M, Dreger P.

Bone Marrow Transplant. 2017 Apr;52(4):544-551. doi: 10.1038/bmt.2016.305. Epub 2016 Dec 12. Erratum in: Bone Marrow Transplant. 2017 Apr;52(4):656.

PMID:
27941777
12.

p53 Specifically Binds Triplex DNA In Vitro and in Cells.

Brázdová M, Tichý V, Helma R, Bažantová P, Polášková A, Krejčí A, Petr M, Navrátilová L, Tichá O, Nejedlý K, Bennink ML, Subramaniam V, Bábková Z, Martínek T, Lexa M, Adámik M.

PLoS One. 2016 Dec 1;11(12):e0167439. doi: 10.1371/journal.pone.0167439. eCollection 2016.

13.

Wild-type p53 binds to MYC promoter G-quadruplex.

Petr M, Helma R, Polášková A, Krejčí A, Dvořáková Z, Kejnovská I, Navrátilová L, Adámik M, Vorlíčková M, Brázdová M.

Biosci Rep. 2016 Oct 14;36(5). pii: e00397. Print 2016 Oct.

14.

The silent information regulator 1 (Sirt1) is a positive regulator of the Notch pathway in Drosophila.

Horvath M, Mihajlovic Z, Slaninova V, Perez-Gomez R, Moshkin Y, Krejci A.

Biochem J. 2016 Nov 15;473(22):4129-4143. Epub 2016 Sep 13.

PMID:
27623778
15.

Notch stimulates growth by direct regulation of genes involved in the control of glycolysis and the tricarboxylic acid cycle.

Slaninova V, Krafcikova M, Perez-Gomez R, Steffal P, Trantirek L, Bray SJ, Krejci A.

Open Biol. 2016 Feb;6(2):150155. doi: 10.1098/rsob.150155.

16.

[Bioinformatics and Next -generation Sequencing].

Krejčí A, Müller P, Vojtěšek B.

Klin Onkol. 2015;28 Suppl 2:2S91-6. Review. Czech.

PMID:
26374164
17.

Hammock: a hidden Markov model-based peptide clustering algorithm to identify protein-interaction consensus motifs in large datasets.

Krejci A, Hupp TR, Lexa M, Vojtesek B, Muller P.

Bioinformatics. 2016 Jan 1;32(1):9-16. doi: 10.1093/bioinformatics/btv522. Epub 2015 Sep 5.

18.

Discovery of a novel ligand that modulates the protein-protein interactions of the AAA+ superfamily oncoprotein reptin.

Healy AR, Houston DR, Remnant L, Huart AS, Brychtova V, Maslon MM, Meers O, Muller P, Krejci A, Blackburn EA, Vojtesek B, Hernychova L, Walkinshaw MD, Westwood NJ, Hupp TR.

Chem Sci. 2015 May 1;6(5):3109-3116. doi: 10.1039/c4sc03885a. Epub 2015 Mar 20.

19.

X-ray scattering as a liquid and solid phase probe of ordering within sub-monolayers of iron oxide nanoparticles fabricated by electrophoretic deposition.

Krejci AJ, Yager KG, Ruggiero C, Dickerson JH.

Nanoscale. 2014 Apr 21;6(8):4047-51. doi: 10.1039/c4nr00645c.

PMID:
24599306
20.

A Serrate-Notch-Canoe complex mediates essential interactions between glia and neuroepithelial cells during Drosophila optic lobe development.

Pérez-Gómez R, Slováková J, Rives-Quinto N, Krejci A, Carmena A.

J Cell Sci. 2013 Nov 1;126(Pt 21):4873-84. doi: 10.1242/jcs.125617. Epub 2013 Aug 22.

21.
22.

Notch cooperates with Lozenge/Runx to lock haemocytes into a differentiation programme.

Terriente-Felix A, Li J, Collins S, Mulligan A, Reekie I, Bernard F, Krejci A, Bray S.

Development. 2013 Feb;140(4):926-37. doi: 10.1242/dev.086785. Epub 2013 Jan 16.

23.

Transcriptional dynamics elicited by a short pulse of notch activation involves feed-forward regulation by E(spl)/Hes genes.

Housden BE, Fu AQ, Krejci A, Bernard F, Fischer B, Tavaré S, Russell S, Bray SJ.

PLoS Genet. 2013;9(1):e1003162. doi: 10.1371/journal.pgen.1003162. Epub 2013 Jan 3.

24.

Dissecting the mechanisms of Notch induced hyperplasia.

Djiane A, Krejci A, Bernard F, Fexova S, Millen K, Bray SJ.

EMBO J. 2013 Jan 9;32(1):60-71. doi: 10.1038/emboj.2012.326. Epub 2012 Dec 11.

25.

Using Voronoi tessellations to assess nanoparticle-nanoparticle interactions and ordering in monolayer films formed through electrophoretic deposition.

Krejci AJ, Thomas CG, Mandal J, Gonzalo-Juan I, He W, Stillwell RL, Park JH, Prasai D, Volkov V, Bolotin KI, Dickerson JH.

J Phys Chem B. 2013 Feb 14;117(6):1664-9. doi: 10.1021/jp305958w. Epub 2012 Sep 5.

PMID:
22908936
26.

Metabolic sensors and their interplay with cell signalling and transcription.

Krejčí A.

Biochem Soc Trans. 2012 Apr;40(2):311-23. doi: 10.1042/BST20110767. Review.

PMID:
22435805
27.

Toward dynamic control over TiO2 nanocrystal monolayer-by-monolayer film formation by electrophoretic deposition in nonpolar solvents.

Gonzalo-Juan I, Krejci AJ, Dickerson JH.

Langmuir. 2012 Mar 20;28(11):5295-301. doi: 10.1021/la205124s. Epub 2012 Mar 6.

PMID:
22352851
28.

Chromatin modification of Notch targets in olfactory receptor neuron diversification.

Endo K, Karim MR, Taniguchi H, Krejci A, Kinameri E, Siebert M, Ito K, Bray SJ, Moore AW.

Nat Neurosci. 2011 Dec 25;15(2):224-33. doi: 10.1038/nn.2998.

PMID:
22197833
29.

Evolution of ordering in iron oxide nanoparticle monolayers using electrophoretic deposition.

Krejci AJ, Gonzalo-Juan I, Dickerson JH.

ACS Appl Mater Interfaces. 2011 Sep;3(9):3611-5. doi: 10.1021/am200830f. Epub 2011 Aug 26.

PMID:
21846090
30.

On parameter synthesis by parallel model checking.

Barnat J, Brim L, Krejcí A, Streck A, Safránek D, Vejnár M, Vejpustek T.

IEEE/ACM Trans Comput Biol Bioinform. 2012 May-Jun;9(3):693-705. doi: 10.1109/TCBB.2011.110.

PMID:
21788679
31.

A facile synthesis of Te nanoparticles with binary size distribution by green chemistry.

He W, Krejci A, Lin J, Osmulski ME, Dickerson JH.

Nanoscale. 2011 Apr;3(4):1523-5. doi: 10.1039/c1nr10025d. Epub 2011 Mar 23.

PMID:
21431193
32.

Epigenetic changes at Il12rb2 and Tbx21 in relation to plasticity behavior of Th17 cells.

Bending D, Newland S, Krejcí A, Phillips JM, Bray S, Cooke A.

J Immunol. 2011 Mar 15;186(6):3373-82. doi: 10.4049/jimmunol.1003216. Epub 2011 Feb 9.

33.

Transferable graphene oxide films with tunable microstructures.

Hasan SA, Rigueur JL, Harl RR, Krejci AJ, Gonzalo-Juan I, Rogers BR, Dickerson JH.

ACS Nano. 2010 Dec 28;4(12):7367-72. doi: 10.1021/nn102152x. Epub 2010 Nov 29.

PMID:
21114272
34.

Specificity of Notch pathway activation: twist controls the transcriptional output in adult muscle progenitors.

Bernard F, Krejci A, Housden B, Adryan B, Bray SJ.

Development. 2010 Aug;137(16):2633-42. doi: 10.1242/dev.053181. Epub 2010 Jul 7.

35.

Direct response to Notch activation: signaling crosstalk and incoherent logic.

Krejcí A, Bernard F, Housden BE, Collins S, Bray SJ.

Sci Signal. 2009 Jan 27;2(55):ra1. doi: 10.1126/scisignal.2000140. Erratum in: Sci Signal. 2009;2(58):er3.

36.

Grainy head promotes expression of septate junction proteins and influences epithelial morphogenesis.

Narasimha M, Uv A, Krejci A, Brown NH, Bray SJ.

J Cell Sci. 2008 Mar 15;121(Pt 6):747-52. doi: 10.1242/jcs.019422. Epub 2008 Feb 26.

37.

In vitro approaches to evaluation of Sun Protection Factor.

Bendová H, Akrman J, Krejcí A, Kubác L, Jírová D, Kejlová K, Kolárová H, Brabec M, Malý M.

Toxicol In Vitro. 2007 Oct;21(7):1268-75. Epub 2007 Sep 12.

PMID:
17945463
38.

Gene-specific targeting of the histone chaperone asf1 to mediate silencing.

Goodfellow H, Krejcí A, Moshkin Y, Verrijzer CP, Karch F, Bray SJ.

Dev Cell. 2007 Oct;13(4):593-600.

39.
40.

The transcriptional repressor REST is a critical regulator of the neurosecretory phenotype.

Bruce AW, Krejcí A, Ooi L, Deuchars J, Wood IC, Dolezal V, Buckley NJ.

J Neurochem. 2006 Sep;98(6):1828-40.

41.

Hairless-mediated repression of notch target genes requires the combined activity of Groucho and CtBP corepressors.

Nagel AC, Krejci A, Tenin G, Bravo-Patiño A, Bray S, Maier D, Preiss A.

Mol Cell Biol. 2005 Dec;25(23):10433-41.

42.
43.

Multiple promoters drive tissue-specific expression of the human M muscarinic acetylcholine receptor gene.

Krejci A, Bruce AW, Dolezal V, Tucek S, Buckley NJ.

J Neurochem. 2004 Oct;91(1):88-98.

44.

Regulation of signal transduction at M2 muscarinic receptor.

Krejcí A, Michal P, Jakubík J, Rícný J, Dolezal V.

Physiol Res. 2004;53 Suppl 1:S131-40. Review.

45.
47.

Pallister-Hall syndrome and McKusick-Kaufmann syndrome: one entity?

Unsinn KM, Neu N, Krejci A, Posch A, Menardi G, Gassner I.

J Med Genet. 1995 Feb;32(2):125-8.

48.

[Clinical picture and therapy of gastroschisis (author's transl)].

Helmer F, Howanietz L, Krejci A, Lachmann D.

Wien Klin Wochenschr. 1975 Sep 19;87(17):536-44. German.

PMID:
127426
49.

[THE CONGENITAL DIVERTICULUM OF THE VENTRICULAR HEART SEGMENT].

KUCSKO L, KREJCI A.

Z Kreislaufforsch. 1964 Apr;53:379-90. German. No abstract available.

PMID:
14210215
50.

[Recurrent esophagotracheal fistual following esophageal atresia].

HELMER F, KREJCI A.

Klin Med Osterr Z Wiss Prakt Med. 1962 Mar;17:193-8. German. No abstract available.

PMID:
13906336

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