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Items: 1 to 50 of 65

1.

Microbiome profiling of drinking water in relation to incidence of inflammatory bowel disease.

Forbes JD, Van Domselaar G, Sargent M, Green C, Springthorpe S, Krause DO, Bernstein CN.

Can J Microbiol. 2016 Sep;62(9):781-93. doi: 10.1139/cjm-2016-0219. Epub 2016 May 18.

PMID:
27420183
2.

The Features of Fecal and Ileal Mucosa-Associated Microbiota in Dairy Calves during Early Infection with Mycobacterium avium Subspecies paratuberculosis.

Derakhshani H, De Buck J, Mortier R, Barkema HW, Krause DO, Khafipour E.

Front Microbiol. 2016 Mar 31;7:426. doi: 10.3389/fmicb.2016.00426. eCollection 2016.

3.

Genome-based Definition of an Inflammatory Bowel Disease-associated Adherent-Invasive Escherichia coli Pathovar.

Desilets M, Deng X, Rao C, Ensminger AW, Krause DO, Sherman PM, Gray-Owen SD.

Inflamm Bowel Dis. 2016 Jan;22(1):1-12. doi: 10.1097/MIB.0000000000000574. Erratum in: Inflamm Bowel Dis. 2016 Feb;22(2):E10. Deng, Xiangding [corrected to Deng, Xianding].

PMID:
26444104
4.

Role of the BaeSR two-component regulatory system in resistance of Escherichia coli O157:H7 to allyl isothiocyanate.

Cordeiro RP, Krause DO, Doria JH, Holley RA.

Food Microbiol. 2014 Sep;42:136-41. doi: 10.1016/j.fm.2014.03.011. Epub 2014 Mar 26.

PMID:
24929729
5.

Effect of crowding stress and Escherichia coli K88+ challenge in nursery pigs supplemented with anti-Escherichia coli K88+ probiotics.

Khafipour E, Munyaka PM, Nyachoti CM, Krause DO, Rodriguez-Lecompte JC.

J Anim Sci. 2014 May;92(5):2017-29. doi: 10.2527/jas.2013-7043. Epub 2014 Mar 18.

PMID:
24663172
6.

Targeted 16S rRNA high-throughput sequencing to characterize microbial communities during composting of livestock mortalities.

Tkachuk VL, Krause DO, Knox NC, Hamm AC, Zvomuya F, Ominski KH, McAllister TA.

J Appl Microbiol. 2014 May;116(5):1181-94. doi: 10.1111/jam.12449. Epub 2014 Feb 17.

7.

Characterization of the gut-associated microbiome in inflammatory pouch complications following ileal pouch-anal anastomosis.

Tyler AD, Knox N, Kabakchiev B, Milgrom R, Kirsch R, Cohen Z, McLeod RS, Guttman DS, Krause DO, Silverberg MS.

PLoS One. 2013 Sep 24;8(9):e66934. doi: 10.1371/journal.pone.0066934. eCollection 2013.

8.

Screening of condensed tannins from Canadian prairie forages for anti-Escherichia coli O157:H7 with an emphasis on purple prairie clover (Dalea purpurea Vent).

Wang Y, Jin L, Ominski KH, He M, Xu Z, Krause DO, Acharya SN, Wittenberg KM, Liu XL, Stanford K, McAllister TA.

J Food Prot. 2013 Apr;76(4):560-7. doi: 10.4315/0362-028X.JFP-12-259.

PMID:
23575115
9.

Antimicrobial resistance of Enterococcus species from meat and fermented meat products isolated by a PCR-based rapid screening method.

Jahan M, Krause DO, Holley RA.

Int J Food Microbiol. 2013 May 15;163(2-3):89-95. doi: 10.1016/j.ijfoodmicro.2013.02.017. Epub 2013 Mar 4.

PMID:
23558191
10.

Assessing the inactivation of Mycobacterium avium subsp. paratuberculosis during composting of livestock carcasses.

Tkachuk VL, Krause DO, McAllister TA, Buckley KE, Reuter T, Hendrick S, Ominski KH.

Appl Environ Microbiol. 2013 May;79(10):3215-24. doi: 10.1128/AEM.03768-12. Epub 2013 Mar 15.

11.

Board-invited review: Rumen microbiology: leading the way in microbial ecology.

Krause DO, Nagaraja TG, Wright AD, Callaway TR.

J Anim Sci. 2013 Jan;91(1):331-41. doi: 10.2527/jas.2012-5567. Review.

PMID:
23404990
12.

Interactions of Saccharomyces cerevisiae fermentation product and in-feed antibiotic on gastrointestinal and immunological responses in piglets challenged with Escherichia coli K88+.

Kiarie E, Scott M, Krause DO, Khazanehei H, Khafipour E, Nyachoti CM.

J Anim Sci. 2012 Dec;90 Suppl 4:1-3. doi: 10.2527/jas.52977.

PMID:
23365265
13.

Pyrosequencing reveals the influence of organic and conventional farming systems on bacterial communities.

Li R, Khafipour E, Krause DO, Entz MH, de Kievit TR, Fernando WG.

PLoS One. 2012;7(12):e51897. doi: 10.1371/journal.pone.0051897. Epub 2012 Dec 19.

14.

Effects of subacute ruminal acidosis challenges on fermentation and endotoxins in the rumen and hindgut of dairy cows.

Li S, Khafipour E, Krause DO, Kroeker A, Rodriguez-Lecompte JC, Gozho GN, Plaizier JC.

J Dairy Sci. 2012 Jan;95(1):294-303. doi: 10.3168/jds.2011-4447.

15.

Weaned pig responses to Escherichia coli K88 oral challenge when receiving a lysozyme supplement.

Nyachoti CM, Kiarie E, Bhandari SK, Zhang G, Krause DO.

J Anim Sci. 2012 Jan;90(1):252-60. doi: 10.2527/jas.2010-3596. Epub 2011 Sep 2.

PMID:
21890507
16.

Characterization of Escherichia coli isolated from gut biopsies of newly diagnosed patients with inflammatory bowel disease.

Sepehri S, Khafipour E, Bernstein CN, Coombes BK, Pilar AV, Karmali M, Ziebell K, Krause DO.

Inflamm Bowel Dis. 2011 Jul;17(7):1451-63. doi: 10.1002/ibd.21509. Epub 2010 Dec 9.

PMID:
21674703
17.

Pathophysiology and pathogenesis of immune-mediated inflammatory diseases: commonalities and differences.

Rahman P, Inman RD, El-Gabalawy H, Krause DO.

J Rheumatol Suppl. 2010 May;85:11-26. doi: 10.3899/jrheum.091462. Review.

PMID:
20436162
18.

Population structure of rumen Escherichia coli associated with subacute ruminal acidosis (SARA) in dairy cattle.

Khafipour E, Plaizier JC, Aikman PC, Krause DO.

J Dairy Sci. 2011 Jan;94(1):351-60. doi: 10.3168/jds.2010-3435.

19.

Growth performance and gastrointestinal microbial ecology responses of piglets receiving Saccharomyces cerevisiae fermentation products after an oral challenge with Escherichia coli (K88).

Kiarie E, Bhandari S, Scott M, Krause DO, Nyachoti CM.

J Anim Sci. 2011 Apr;89(4):1062-78. doi: 10.2527/jas.2010-3424. Epub 2010 Dec 10.

PMID:
21148775
20.

Complete genome sequence of adherent invasive Escherichia coli UM146 isolated from Ileal Crohn's disease biopsy tissue.

Krause DO, Little AC, Dowd SE, Bernstein CN.

J Bacteriol. 2011 Jan;193(2):583. doi: 10.1128/JB.01290-10. Epub 2010 Nov 12.

21.

Effect of environmental factors and influence of rumen and hindgut biogeography on bacterial communities in steers.

Romero-PĂ©rez GA, Ominski KH, McAllister TA, Krause DO.

Appl Environ Microbiol. 2011 Jan;77(1):258-68. doi: 10.1128/AEM.01289-09. Epub 2010 Nov 12.

22.

Response of nursery pigs to a synbiotic preparation of starch and an anti-Escherichia coli K88 probiotic.

Krause DO, Bhandari SK, House JD, Nyachoti CM.

Appl Environ Microbiol. 2010 Dec;76(24):8192-200. doi: 10.1128/AEM.01427-10. Epub 2010 Oct 15.

23.

Susceptibility of meat starter cultures to antimicrobials used in food animals in Canada.

Cordeiro RP, Du T, Mulvey MR, Krause DO, Holley RA.

J Food Prot. 2010 May;73(5):916-22.

PMID:
20501043
24.

Rumen microbiome composition determined using two nutritional models of subacute ruminal acidosis.

Khafipour E, Li S, Plaizier JC, Krause DO.

Appl Environ Microbiol. 2009 Nov;75(22):7115-24. doi: 10.1128/AEM.00739-09. Epub 2009 Sep 25.

25.

Phylogenetic analysis of inflammatory bowel disease associated Escherichia coli and the fimH virulence determinant.

Sepehri S, Kotlowski R, Bernstein CN, Krause DO.

Inflamm Bowel Dis. 2009 Nov;15(11):1737-45. doi: 10.1002/ibd.20966.

PMID:
19462430
26.

Effect of dietary protein level on growth performance, indicators of enteric health, and gastrointestinal microbial ecology of weaned pigs induced with postweaning colibacillosis.

Opapeju FO, Krause DO, Payne RL, Rademacher M, Nyachoti CM.

J Anim Sci. 2009 Aug;87(8):2635-43. doi: 10.2527/jas.2008-1310. Epub 2009 Apr 24.

PMID:
19395520
27.

Alfalfa pellet-induced subacute ruminal acidosis in dairy cows increases bacterial endotoxin in the rumen without causing inflammation.

Khafipour E, Krause DO, Plaizier JC.

J Dairy Sci. 2009 Apr;92(4):1712-24. doi: 10.3168/jds.2008-1656.

28.

Development and in vitro evaluation of an Escherichia coli probiotic able to inhibit the growth of pathogenic Escherichia coli K88.

Setia A, Bhandari SK, House JD, Nyachoti CM, Krause DO.

J Anim Sci. 2009 Jun;87(6):2005-12. doi: 10.2527/jas.2008-1400. Epub 2009 Mar 13.

PMID:
19286822
29.

A grain-based subacute ruminal acidosis challenge causes translocation of lipopolysaccharide and triggers inflammation.

Khafipour E, Krause DO, Plaizier JC.

J Dairy Sci. 2009 Mar;92(3):1060-70. doi: 10.3168/jds.2008-1389.

30.

Potential to reduce Escherichia coli shedding in cattle feces by using sainfoin (Onobrychis viciifolia) forage, tested in vitro and in vivo.

Berard NC, Holley RA, McAllister TA, Ominski KH, Wittenberg KM, Bouchard KS, Bouchard JJ, Krause DO.

Appl Environ Microbiol. 2009 Feb;75(4):1074-9. doi: 10.1128/AEM.00983-08. Epub 2008 Dec 19.

31.

Raw potato starch in weaned pig diets and its influence on postweaning scours and the molecular microbial ecology of the digestive tract.

Bhandari SK, Nyachoti CM, Krause DO.

J Anim Sci. 2009 Mar;87(3):984-93. doi: 10.2527/jas.2007-0747. Epub 2008 Oct 24.

PMID:
18952739
32.

Response of piglets weaned from sows fed diets supplemented with conjugated linoleic acid (CLA) to an Escherichia coli K88+ oral challenge.

Patterson R, Connor ML, Krause DO, Nyachoti CM.

Animal. 2008 Sep;2(9):1303-11. doi: 10.1017/S1751731108002309.

PMID:
22443819
33.

Population-based case-control study of alpha 1-antitrypsin and SLC11A1 in Crohn's disease and ulcerative colitis.

Kotlowski R, Bernstein CN, Silverberg MS, Krause DO.

Inflamm Bowel Dis. 2008 Aug;14(8):1112-7. doi: 10.1002/ibd.20425.

PMID:
18340647
34.

Subacute ruminal acidosis in dairy cows: the physiological causes, incidence and consequences.

Plaizier JC, Krause DO, Gozho GN, McBride BW.

Vet J. 2008 Apr;176(1):21-31. doi: 10.1016/j.tvjl.2007.12.016. Epub 2008 Mar 10. Review.

PMID:
18329918
35.
36.

Evaluation of alternatives to antibiotics using an Escherichia coli K88+ model of piglet diarrhea: effects on gut microbial ecology.

Bhandari SK, Xu B, Nyachoti CM, Giesting DW, Krause DO.

J Anim Sci. 2008 Apr;86(4):836-47. doi: 10.2527/jas.2006-822. Epub 2008 Jan 11.

PMID:
18192551
37.

Surface expression of Toll-like receptor 9 is upregulated on intestinal epithelial cells in response to pathogenic bacterial DNA.

Ewaschuk JB, Backer JL, Churchill TA, Obermeier F, Krause DO, Madsen KL.

Infect Immun. 2007 May;75(5):2572-9. Epub 2007 Feb 26.

38.

Microbial diversity of inflamed and noninflamed gut biopsy tissues in inflammatory bowel disease.

Sepehri S, Kotlowski R, Bernstein CN, Krause DO.

Inflamm Bowel Dis. 2007 Jun;13(6):675-83.

PMID:
17262808
39.
40.

Screening of bacteria from the cattle gastrointestinal tract for inhibitory activity against enterohemorrhagic Escherichia coli O157:H7, O111:H-, and O26:H11.

Gough JM, Conlan LL, Denman SE, Krause DO, Smith WJ, Williamson MA, McSweeney CS.

J Food Prot. 2006 Dec;69(12):2843-50.

PMID:
17186648
41.
42.

High prevalence of Escherichia coli belonging to the B2+D phylogenetic group in inflammatory bowel disease.

Kotlowski R, Bernstein CN, Sepehri S, Krause DO.

Gut. 2007 May;56(5):669-75. Epub 2006 Oct 6.

43.
44.

Efficacy of ionophores in cattle diets for mitigation of enteric methane.

Guan H, Wittenberg KM, Ominski KH, Krause DO.

J Anim Sci. 2006 Jul;84(7):1896-906.

PMID:
16775074
45.

Spatial analysis of campylobacter infection in the Canadian province of Manitoba.

Green CG, Krause DO, Wylie JL.

Int J Health Geogr. 2006 Jan 16;5:2.

46.

Effect of finishing diets on Escherichia coli populations and prevalence of enterohaemorrhagic E. coli virulence genes in cattle faeces.

Gilbert RA, Tomkins N, Padmanabha J, Gough JM, Krause DO, McSweeney CS.

J Appl Microbiol. 2005;99(4):885-94.

47.

Subacute ruminal acidosis induces ruminal lipopolysaccharide endotoxin release and triggers an inflammatory response.

Gozho GN, Plaizier JC, Krause DO, Kennedy AD, Wittenberg KM.

J Dairy Sci. 2005 Apr;88(4):1399-403.

48.

The diversity of Escherichia coli serotypes and biotypes in cattle faeces.

Bettelheim KA, Kuzevski A, Gilbert RA, Krause DO, McSweeney CS.

J Appl Microbiol. 2005;98(3):699-709.

49.

Use of community genome arrays (CGAs) to assess the effects of Acacia angustissima on rumen ecology.

Krause DO, Smith WJ, McSweeney CS.

Microbiology. 2004 Sep;150(Pt 9):2899-909.

PMID:
15347749
50.

Opportunities to improve fiber degradation in the rumen: microbiology, ecology, and genomics.

Krause DO, Denman SE, Mackie RI, Morrison M, Rae AL, Attwood GT, McSweeney CS.

FEMS Microbiol Rev. 2003 Dec;27(5):663-93. Review.

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