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Items: 21

1.

The role of transposable elements and DNA damage repair mechanisms in gene duplications and gene fusions in plant genomes.

Krasileva KV.

Curr Opin Plant Biol. 2019 Apr;48:18-25. doi: 10.1016/j.pbi.2019.01.004. Epub 2019 Mar 5. Review.

2.

Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions.

Bailey PC, Schudoma C, Jackson W, Baggs E, Dagdas G, Haerty W, Moscou M, Krasileva KV.

Genome Biol. 2018 Feb 19;19(1):23. doi: 10.1186/s13059-018-1392-6.

3.

Genetics of a hardy crop.

Krasileva KV.

Nat Biotechnol. 2017 Oct 11;35(10):922-924. doi: 10.1038/nbt.3984. No abstract available.

PMID:
29019990
4.

NLR diversity, helpers and integrated domains: making sense of the NLR IDentity.

Baggs E, Dagdas G, Krasileva KV.

Curr Opin Plant Biol. 2017 Aug;38:59-67. doi: 10.1016/j.pbi.2017.04.012. Epub 2017 May 8. Review.

5.

An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations.

Clavijo BJ, Venturini L, Schudoma C, Accinelli GG, Kaithakottil G, Wright J, Borrill P, Kettleborough G, Heavens D, Chapman H, Lipscombe J, Barker T, Lu FH, McKenzie N, Raats D, Ramirez-Gonzalez RH, Coince A, Peel N, Percival-Alwyn L, Duncan O, Trösch J, Yu G, Bolser DM, Namaati G, Kerhornou A, Spannagl M, Gundlach H, Haberer G, Davey RP, Fosker C, Palma FD, Phillips AL, Millar AH, Kersey PJ, Uauy C, Krasileva KV, Swarbreck D, Bevan MW, Clark MD.

Genome Res. 2017 May;27(5):885-896. doi: 10.1101/gr.217117.116.

6.

Uncovering hidden variation in polyploid wheat.

Krasileva KV, Vasquez-Gross HA, Howell T, Bailey P, Paraiso F, Clissold L, Simmonds J, Ramirez-Gonzalez RH, Wang X, Borrill P, Fosker C, Ayling S, Phillips AL, Uauy C, Dubcovsky J.

Proc Natl Acad Sci U S A. 2017 Feb 7;114(6):E913-E921. doi: 10.1073/pnas.1619268114. Epub 2017 Jan 17.

7.

Comparative analysis of plant immune receptor architectures uncovers host proteins likely targeted by pathogens.

Sarris PF, Cevik V, Dagdas G, Jones JD, Krasileva KV.

BMC Biol. 2016 Feb 19;14:8. doi: 10.1186/s12915-016-0228-7.

8.

Heterologous Expression Screens in Nicotiana benthamiana Identify a Candidate Effector of the Wheat Yellow Rust Pathogen that Associates with Processing Bodies.

Petre B, Saunders DG, Sklenar J, Lorrain C, Krasileva KV, Win J, Duplessis S, Kamoun S.

PLoS One. 2016 Feb 10;11(2):e0149035. doi: 10.1371/journal.pone.0149035. eCollection 2016.

9.

Focus issue on plant immunity: from model systems to crop species.

Schwessinger B, Bart R, Krasileva KV, Coaker G.

Front Plant Sci. 2015 Mar 26;6:195. doi: 10.3389/fpls.2015.00195. eCollection 2015. No abstract available.

10.

The "sensor domains" of plant NLR proteins: more than decoys?

Wu CH, Krasileva KV, Banfield MJ, Terauchi R, Kamoun S.

Front Plant Sci. 2015 Mar 5;6:134. doi: 10.3389/fpls.2015.00134. eCollection 2015. No abstract available.

11.

Efficient Genome-Wide Detection and Cataloging of EMS-Induced Mutations Using Exome Capture and Next-Generation Sequencing.

Henry IM, Nagalakshmi U, Lieberman MC, Ngo KJ, Krasileva KV, Vasquez-Gross H, Akhunova A, Akhunov E, Dubcovsky J, Tai TH, Comai L.

Plant Cell. 2014 Apr;26(4):1382-1397. Epub 2014 Apr 11.

12.

Separating homeologs by phasing in the tetraploid wheat transcriptome.

Krasileva KV, Buffalo V, Bailey P, Pearce S, Ayling S, Tabbita F, Soria M, Wang S; IWGS Consortium, Akhunov E, Uauy C, Dubcovsky J.

Genome Biol. 2013 Jun 25;14(6):R66. doi: 10.1186/gb-2013-14-6-r66.

13.

Effector recognition and activation of the Arabidopsis thaliana NLR innate immune receptors.

Steinbrenner AD, Goritschnig S, Krasileva KV, Schreiber KJ, Staskawicz BJ.

Cold Spring Harb Symp Quant Biol. 2012;77:249-57. doi: 10.1101/sqb.2012.77.014860. Epub 2012 Nov 21. Review.

PMID:
23174767
14.

Computational prediction and molecular characterization of an oomycete effector and the cognate Arabidopsis resistance gene.

Goritschnig S, Krasileva KV, Dahlbeck D, Staskawicz BJ.

PLoS Genet. 2012;8(2):e1002502. doi: 10.1371/journal.pgen.1002502. Epub 2012 Feb 16.

15.

Sequence divergent RXLR effectors share a structural fold conserved across plant pathogenic oomycete species.

Win J, Krasileva KV, Kamoun S, Shirasu K, Staskawicz BJ, Banfield MJ.

PLoS Pathog. 2012 Jan;8(1):e1002400. doi: 10.1371/journal.ppat.1002400. Epub 2012 Jan 12. Review. No abstract available.

16.

Global analysis of Arabidopsis/downy mildew interactions reveals prevalence of incomplete resistance and rapid evolution of pathogen recognition.

Krasileva KV, Zheng C, Leonelli L, Goritschnig S, Dahlbeck D, Staskawicz BJ.

PLoS One. 2011;6(12):e28765. doi: 10.1371/journal.pone.0028765. Epub 2011 Dec 14.

17.

Computational and biochemical analysis of the Xanthomonas effector AvrBs2 and its role in the modulation of Xanthomonas type three effector delivery.

Zhao B, Dahlbeck D, Krasileva KV, Fong RW, Staskawicz BJ.

PLoS Pathog. 2011 Dec;7(12):e1002408. doi: 10.1371/journal.ppat.1002408. Epub 2011 Dec 1.

18.

Hyaloperonospora arabidopsidis ATR1 effector is a repeat protein with distributed recognition surfaces.

Chou S, Krasileva KV, Holton JM, Steinbrenner AD, Alber T, Staskawicz BJ.

Proc Natl Acad Sci U S A. 2011 Aug 9;108(32):13323-8. doi: 10.1073/pnas.1109791108. Epub 2011 Jul 25.

19.

Activation of an Arabidopsis resistance protein is specified by the in planta association of its leucine-rich repeat domain with the cognate oomycete effector.

Krasileva KV, Dahlbeck D, Staskawicz BJ.

Plant Cell. 2010 Jul;22(7):2444-58. doi: 10.1105/tpc.110.075358. Epub 2010 Jul 2.

20.

Interference of quorum sensing in Pseudomonas syringae by bacterial epiphytes that limit iron availability.

Dulla GF, Krasileva KV, Lindow SE.

Environ Microbiol. 2010 Jun;12(6):1762-74. doi: 10.1111/j.1462-2920.2010.02261.x.

PMID:
20553555
21.

Adaptive evolution has targeted the C-terminal domain of the RXLR effectors of plant pathogenic oomycetes.

Win J, Morgan W, Bos J, Krasileva KV, Cano LM, Chaparro-Garcia A, Ammar R, Staskawicz BJ, Kamoun S.

Plant Cell. 2007 Aug;19(8):2349-69. Epub 2007 Aug 3.

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