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Items: 16

1.

Human gut microbiota transferred to germ-free NOD mice modulate the progression towards type 1 diabetes regardless of the pace of beta cell function loss in the donor.

Neuman V, Cinek O, Funda DP, Hudcovic T, Golias J, Kramna L, Petruzelkova L, Pruhova S, Sumnik Z.

Diabetologia. 2019 Jul;62(7):1291-1296. doi: 10.1007/s00125-019-4869-2. Epub 2019 Apr 25.

PMID:
31025045
2.

Enterovirus as trigger of coeliac disease: nested case-control study within prospective birth cohort.

Kahrs CR, Chuda K, Tapia G, Stene LC, Mårild K, Rasmussen T, Rønningen KS, Lundin KEA, Kramna L, Cinek O, Størdal K.

BMJ. 2019 Feb 13;364:l231. doi: 10.1136/bmj.l231.

3.

Virus genotyping by massive parallel amplicon sequencing: adenovirus and enterovirus in the Norwegian MIDIA study.

Cinek O, Kramna L, Mazankova K, Kunteová K, Chudá K, C J Claas E, Stene LC, Tapia G.

J Med Virol. 2019 Apr;91(4):606-614. doi: 10.1002/jmv.25361. Epub 2018 Dec 10.

PMID:
30537228
4.

Virome Sequencing of Stool Samples.

Kramná L, Cinek O.

Methods Mol Biol. 2018;1838:59-83. doi: 10.1007/978-1-4939-8682-8_6.

PMID:
30128990
5.

The bacteriome at the onset of type 1 diabetes: A study from four geographically distant African and Asian countries.

Cinek O, Kramna L, Mazankova K, Odeh R, Alassaf A, Ibekwe MU, Ahmadov G, Elmahi BME, Mekki H, Lebl J, Abdullah MA.

Diabetes Res Clin Pract. 2018 Oct;144:51-62. doi: 10.1016/j.diabres.2018.08.010. Epub 2018 Aug 16.

PMID:
30121305
6.

Nature-derived microbiota exposure as a novel immunomodulatory approach.

Nurminen N, Lin J, Grönroos M, Puhakka R, Kramna L, Vari HK, Viskari H, Oikarinen S, Roslund M, Parajuli A, Tyni I, Cinek O, Laitinen O, Hyöty H, Sinkkonen A.

Future Microbiol. 2018 Jun 1;13:737-744. doi: 10.2217/fmb-2017-0286. Epub 2018 May 17.

PMID:
29771153
7.

Quantitative CrAssphage real-time PCR assay derived from data of multiple geographically distant populations.

Cinek O, Mazankova K, Kramna L, Odeh R, Alassaf A, Ibekwe MU, Ahmadov G, Mekki H, Abdullah MA, Elmahi BME, Hyöty H, Rainetova P.

J Med Virol. 2018 Apr;90(4):767-771. doi: 10.1002/jmv.25012. Epub 2018 Jan 19.

PMID:
29297933
8.

Changes in the lung bacteriome in relation to antipseudomonal therapy in children with cystic fibrosis.

Kramná L, Dřevínek P, Lin J, Kulich M, Cinek O.

Folia Microbiol (Praha). 2018 Mar;63(2):237-248. doi: 10.1007/s12223-017-0562-3. Epub 2017 Nov 10.

PMID:
29127619
9.

Vipie: web pipeline for parallel characterization of viral populations from multiple NGS samples.

Lin J, Kramna L, Autio R, Hyöty H, Nykter M, Cinek O.

BMC Genomics. 2017 May 15;18(1):378. doi: 10.1186/s12864-017-3721-7.

10.

Next-Generation Sequencing Combined with Specific PCR Assays To Determine the Bacterial 16S rRNA Gene Profiles of Middle Ear Fluid Collected from Children with Acute Otitis Media.

Sillanpää S, Kramna L, Oikarinen S, Sipilä M, Rautiainen M, Aittoniemi J, Laranne J, Hyöty H, Cinek O.

mSphere. 2017 Mar 22;2(2). pii: e00006-17. doi: 10.1128/mSphere.00006-17. eCollection 2017 Mar-Apr.

11.

Imbalance of bacteriome profiles within the Finnish Diabetes Prediction and Prevention study: Parallel use of 16S profiling and virome sequencing in stool samples from children with islet autoimmunity and matched controls.

Cinek O, Kramna L, Lin J, Oikarinen S, Kolarova K, Ilonen J, Simell O, Veijola R, Autio R, Hyöty H.

Pediatr Diabetes. 2017 Nov;18(7):588-598. doi: 10.1111/pedi.12468. Epub 2016 Nov 17.

PMID:
27860030
12.

Moraxella catarrhalis Might Be More Common than Expected in Acute Otitis Media in Young Finnish Children.

Sillanpää S, Oikarinen S, Sipilä M, Kramna L, Rautiainen M, Huhtala H, Aittoniemi J, Laranne J, Hyöty H, Cinek O.

J Clin Microbiol. 2016 Sep;54(9):2373-9. doi: 10.1128/JCM.01146-16. Epub 2016 Jul 13.

13.

An effective combination of sanger and next generation sequencing in diagnostics of primary ciliary dyskinesia.

Djakow J, Kramná L, Dušátková L, Uhlík J, Pursiheimo JP, Svobodová T, Pohunek P, Cinek O.

Pediatr Pulmonol. 2016 May;51(5):498-509. doi: 10.1002/ppul.23261. Epub 2015 Jul 30.

PMID:
26228299
14.

Gut virome sequencing in children with early islet autoimmunity.

Kramná L, Kolářová K, Oikarinen S, Pursiheimo JP, Ilonen J, Simell O, Knip M, Veijola R, Hyöty H, Cinek O.

Diabetes Care. 2015 May;38(5):930-3. doi: 10.2337/dc14-2490. Epub 2015 Feb 12.

PMID:
25678103
15.

Enterovirus RNA in longitudinal blood samples and risk of islet autoimmunity in children with a high genetic risk of type 1 diabetes: the MIDIA study.

Cinek O, Stene LC, Kramna L, Tapia G, Oikarinen S, Witsø E, Rasmussen T, Torjesen PA, Hyöty H, Rønningen KS.

Diabetologia. 2014 Oct;57(10):2193-200. doi: 10.1007/s00125-014-3327-4. Epub 2014 Jul 23.

PMID:
25047648
16.

Enterovirus RNA in peripheral blood may be associated with the variants of rs1990760, a common type 1 diabetes associated polymorphism in IFIH1.

Cinek O, Tapia G, Witsø E, Kramna L, Holkova K, Rasmussen T, Stene LC, Rønningen KS.

PLoS One. 2012;7(11):e48409. doi: 10.1371/journal.pone.0048409. Epub 2012 Nov 7.

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