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Items: 1 to 50 of 62

1.

Color-coded molecular beacons for multiplex PCR screening assays.

Marras SAE, Tyagi S, Antson DO, Kramer FR.

PLoS One. 2019 Mar 18;14(3):e0213906. doi: 10.1371/journal.pone.0213906. eCollection 2019.

2.

Suppression of Wild-Type Amplification by Selectivity Enhancing Agents in PCR Assays that Utilize SuperSelective Primers for the Detection of Rare Somatic Mutations.

Vargas DY, Marras SAE, Tyagi S, Kramer FR.

J Mol Diagn. 2018 Jul;20(4):415-427. doi: 10.1016/j.jmoldx.2018.03.004. Epub 2018 Apr 24.

3.

Multiplex Real-Time PCR Assays that Measure the Abundance of Extremely Rare Mutations Associated with Cancer.

Vargas DY, Kramer FR, Tyagi S, Marras SA.

PLoS One. 2016 May 31;11(5):e0156546. doi: 10.1371/journal.pone.0156546. eCollection 2016.

4.

Molecular beacons in diagnostics.

Tyagi S, Kramer FR.

F1000 Med Rep. 2012;4:10. doi: 10.3410/M4-10. Epub 2012 May 2.

5.

Neuronal mRNAs travel singly into dendrites.

Batish M, van den Bogaard P, Kramer FR, Tyagi S.

Proc Natl Acad Sci U S A. 2012 Mar 20;109(12):4645-50. doi: 10.1073/pnas.1111226109. Epub 2012 Mar 5.

6.

Nucleic acid hybridization: Robust sequence discrimination.

Altan-Bonnet G, Kramer FR.

Nat Chem. 2012 Feb 21;4(3):155-7. doi: 10.1038/nchem.1283. No abstract available.

PMID:
22354426
7.

Rapid universal identification of bacterial pathogens from clinical cultures by using a novel sloppy molecular beacon melting temperature signature technique.

Chakravorty S, Aladegbami B, Burday M, Levi M, Marras SA, Shah D, El-Hajj HH, Kramer FR, Alland D.

J Clin Microbiol. 2010 Jan;48(1):258-67. doi: 10.1128/JCM.01725-09. Epub 2009 Nov 18.

8.

Use of sloppy molecular beacon probes for identification of mycobacterial species.

El-Hajj HH, Marras SA, Tyagi S, Shashkina E, Kamboj M, Kiehn TE, Glickman MS, Kramer FR, Alland D.

J Clin Microbiol. 2009 Apr;47(4):1190-8. doi: 10.1128/JCM.02043-08. Epub 2009 Jan 26.

9.

Mechanism of mRNA transport in the nucleus.

Vargas DY, Raj A, Marras SA, Kramer FR, Tyagi S.

Proc Natl Acad Sci U S A. 2005 Nov 22;102(47):17008-13. Epub 2005 Nov 11.

10.

Real-time assays with molecular beacons and other fluorescent nucleic acid hybridization probes.

Marras SA, Tyagi S, Kramer FR.

Clin Chim Acta. 2006 Jan;363(1-2):48-60. Epub 2005 Aug 18. Review.

PMID:
16111667
11.

tRNA-linked molecular beacons for imaging mRNAs in the cytoplasm of living cells.

Mhlanga MM, Vargas DY, Fung CW, Kramer FR, Tyagi S.

Nucleic Acids Res. 2005 Apr 4;33(6):1902-12. Print 2005.

12.

Rapid detection of rifampin resistance in Mycobacterium tuberculosis isolates from India and Mexico by a molecular beacon assay.

Varma-Basil M, El-Hajj H, Colangeli R, Hazbón MH, Kumar S, Bose M, Bobadilla-del-Valle M, García LG, Hernández A, Kramer FR, Osornio JS, Ponce-de-León A, Alland D.

J Clin Microbiol. 2004 Dec;42(12):5512-6.

13.

Molecular beacons for multiplex detection of four bacterial bioterrorism agents.

Varma-Basil M, El-Hajj H, Marras SA, Hazbón MH, Mann JM, Connell ND, Kramer FR, Alland D.

Clin Chem. 2004 Jun;50(6):1060-2. No abstract available.

14.

Real-time measurement of in vitro transcription.

Marras SA, Gold B, Kramer FR, Smith I, Tyagi S.

Nucleic Acids Res. 2004 May 20;32(9):e72.

15.

Visualizing the distribution and transport of mRNAs in living cells.

Bratu DP, Cha BJ, Mhlanga MM, Kramer FR, Tyagi S.

Proc Natl Acad Sci U S A. 2003 Nov 11;100(23):13308-13. Epub 2003 Oct 28.

16.

Genotyping SNPs with molecular beacons.

Marras SA, Kramer FR, Tyagi S.

Methods Mol Biol. 2003;212:111-28. No abstract available.

PMID:
12491906
17.
18.

Detection of rifampin resistance in Mycobacterium tuberculosis in a single tube with molecular beacons.

El-Hajj HH, Marras SA, Tyagi S, Kramer FR, Alland D.

J Clin Microbiol. 2001 Nov;39(11):4131-7.

19.

N-methyl-D-aspartic acid receptor expression in the dorsolateral prefrontal cortex of elderly patients with schizophrenia.

Dracheva S, Marras SA, Elhakem SL, Kramer FR, Davis KL, Haroutunian V.

Am J Psychiatry. 2001 Sep;158(9):1400-10. Erratum in: Am J Psychiatry 2001 Dec;158(12):2107.

PMID:
11532724
20.

Wavelength-shifting molecular beacons.

Tyagi S, Marras SA, Kramer FR.

Nat Biotechnol. 2000 Nov;18(11):1191-6.

PMID:
11062440
21.

A DNA damage signal is required for p53 to activate gadd45.

Xiao G, Chicas A, Olivier M, Taya Y, Tyagi S, Kramer FR, Bargonetti J.

Cancer Res. 2000 Mar 15;60(6):1711-9.

22.

Genotypic analysis of Mycobacterium tuberculosis in two distinct populations using molecular beacons: implications for rapid susceptibility testing.

Piatek AS, Telenti A, Murray MR, El-Hajj H, Jacobs WR Jr, Kramer FR, Alland D.

Antimicrob Agents Chemother. 2000 Jan;44(1):103-10.

23.

Multiplex detection of four pathogenic retroviruses using molecular beacons.

Vet JA, Majithia AR, Marras SA, Tyagi S, Dube S, Poiesz BJ, Kramer FR.

Proc Natl Acad Sci U S A. 1999 May 25;96(11):6394-9.

24.

Thermodynamic basis of the enhanced specificity of structured DNA probes.

Bonnet G, Tyagi S, Libchaber A, Kramer FR.

Proc Natl Acad Sci U S A. 1999 May 25;96(11):6171-6.

25.

Molecular epidemiologic evaluation of transmissibility and virulence of Mycobacterium tuberculosis.

Rhee JT, Piatek AS, Small PM, Harris LM, Chaparro SV, Kramer FR, Alland D.

J Clin Microbiol. 1999 Jun;37(6):1764-70.

26.

Multiplex detection of single-nucleotide variations using molecular beacons.

Marras SA, Kramer FR, Tyagi S.

Genet Anal. 1999 Feb;14(5-6):151-6.

PMID:
10084107
27.

Differential expression of 10 sigma factor genes in Mycobacterium tuberculosis.

Manganelli R, Dubnau E, Tyagi S, Kramer FR, Smith I.

Mol Microbiol. 1999 Jan;31(2):715-24.

28.

Molecular beacon probes combined with amplification by NASBA enable homogeneous, real-time detection of RNA.

Leone G, van Schijndel H, van Gemen B, Kramer FR, Schoen CD.

Nucleic Acids Res. 1998 May 1;26(9):2150-5.

29.

Molecular beacon sequence analysis for detecting drug resistance in Mycobacterium tuberculosis.

Piatek AS, Tyagi S, Pol AC, Telenti A, Miller LP, Kramer FR, Alland D.

Nat Biotechnol. 1998 Apr;16(4):359-63.

PMID:
9555727
30.

Spectral genotyping of human alleles.

Kostrikis LG, Tyagi S, Mhlanga MM, Ho DD, Kramer FR.

Science. 1998 Feb 20;279(5354):1228-9. No abstract available.

PMID:
9508692
31.

Multicolor molecular beacons for allele discrimination.

Tyagi S, Bratu DP, Kramer FR.

Nat Biotechnol. 1998 Jan;16(1):49-53.

PMID:
9447593
32.

Messenger RNA release from ribosomes during 5'-translational blockage by consecutive low-usage arginine but not leucine codons in Escherichia coli.

Gao W, Tyagi S, Kramer FR, Goldman E.

Mol Microbiol. 1997 Aug;25(4):707-16. Erratum in: Mol Microbiol 1998 Feb;27(3):669.

33.

Amplifiable hybridization probes containing a molecular switch.

Blok HJ, Kramer FR.

Mol Cell Probes. 1997 Jun;11(3):187-94.

PMID:
9232617
34.

Extremely sensitive, background-free gene detection using binary probes and beta replicase.

Tyagi S, Landegren U, Tazi M, Lizardi PM, Kramer FR.

Proc Natl Acad Sci U S A. 1996 May 28;93(11):5395-400.

35.

Molecular beacons: probes that fluoresce upon hybridization.

Tyagi S, Kramer FR.

Nat Biotechnol. 1996 Mar;14(3):303-8.

PMID:
9630890
36.

Novel, ligation-dependent PCR assay for detection of hepatitis C in serum.

Hsuih TC, Park YN, Zaretsky C, Wu F, Tyagi S, Kramer FR, Sperling R, Zhang DY.

J Clin Microbiol. 1996 Mar;34(3):501-7.

37.

Oligonucleotide arrays: new concepts and possibilities.

Chetverin AB, Kramer FR.

Biotechnology (N Y). 1994 Nov;12(11):1093-9. Review.

PMID:
7765552
38.

Coupled replication-translation of amplifiable messenger RNA. A cell-free protein synthesis system that mimics viral infection.

Ryabova L, Volianik E, Kurnasov O, Spirin A, Wu Y, Kramer FR.

J Biol Chem. 1994 Jan 14;269(2):1501-5.

39.

Sequencing of pools of nucleic acids on oligonucleotide arrays.

Chetverin AB, Kramer FR.

Biosystems. 1993;30(1-3):215-31.

PMID:
8374077
40.

Amplifiable messenger RNA.

Wu Y, Zhang DY, Kramer FR.

Proc Natl Acad Sci U S A. 1992 Dec 15;89(24):11769-73.

41.

Exponential amplification of nucleic acids: new diagnostics using DNA polymerases and RNA replicases.

Lizardi PM, Kramer FR.

Trends Biotechnol. 1991 Feb;9(2):53-8. Review.

PMID:
1366952
42.

Amplifiable hybridization probes.

Kramer FR, Lizardi PM.

Ann Biol Clin (Paris). 1990;48(6):409-11.

PMID:
2221501
43.

Quantitative assays based on the use of replicatable hybridization probes.

Lomeli H, Tyagi S, Pritchard CG, Lizardi PM, Kramer FR.

Clin Chem. 1989 Sep;35(9):1826-31.

44.

Replicatable RNA reporters.

Kramer FR, Lizardi PM.

Nature. 1989 Jun 1;339(6223):401-2. No abstract available.

PMID:
2725660
45.

Evolution of the RNA coliphages: the role of secondary structures during RNA replication.

Priano C, Kramer FR, Mills DR.

Cold Spring Harb Symp Quant Biol. 1987;52:321-30. No abstract available.

PMID:
3331342
46.

Synthesis of an amplifiable reporter RNA for bioassays.

Chu BC, Kramer FR, Orgel LE.

Nucleic Acids Res. 1986 Jul 25;14(14):5591-603.

47.

Comparison of pausing during transcription and replication.

LaFlamme SE, Kramer FR, Mills DR.

Nucleic Acids Res. 1985 Dec 9;13(23):8425-40.

49.

Autocatalytic replication of a recombinant RNA.

Miele EA, Mills DR, Kramer FR.

J Mol Biol. 1983 Dec 15;171(3):281-95.

PMID:
6655695
50.

Localization of the Q beta replicase recognition site in MDV-1 RNA.

Nishihara T, Mills DR, Kramer FR.

J Biochem. 1983 Mar;93(3):669-74.

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