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Items: 1 to 50 of 159

1.

Photometric screens identified Arabidopsis peroxisome proteins that impact photosynthesis under dynamic light conditions.

Li J, Tietz S, Cruz JA, Strand DD, Xu Y, Chen J, Kramer DM, Hu J.

Plant J. 2018 Oct 23. doi: 10.1111/tpj.14134. [Epub ahead of print]

PMID:
30350901
2.
3.

Galactoglycerolipid Lipase PGD1 Is Involved in Thylakoid Membrane Remodeling in Response to Adverse Environmental Conditions in Chlamydomonas.

Du ZY, Lucker BF, Zienkiewicz K, Miller TE, Zienkiewicz A, Sears BB, Kramer DM, Benning C.

Plant Cell. 2018 Feb;30(2):447-465. doi: 10.1105/tpc.17.00446. Epub 2018 Feb 5.

PMID:
29437989
4.

RAF2 is a RuBisCO assembly factor in Arabidopsis thaliana.

Fristedt R, Hu C, Wheatley N, Roy LM, Wachter RM, Savage L, Harbinson J, Kramer DM, Merchant SS, Yeates T, Croce R.

Plant J. 2018 Apr;94(1):146-156. doi: 10.1111/tpj.13849. Epub 2018 Mar 12.

PMID:
29396988
5.

Genetic basis of photosynthetic responses to cold in two locally adapted populations of Arabidopsis thaliana.

Oakley CG, Savage L, Lotz S, Larson GR, Thomashow MF, Kramer DM, Schemske DW.

J Exp Bot. 2018 Jan 23;69(3):699-709. doi: 10.1093/jxb/erx437.

6.

From awareness to action: Sudbury, mining and occupational disease in a time of change.

Kramer DM, Holness DL, Haynes E, McMillan K, Berriault C, Kalenge S, Lightfoot N.

Work. 2017;58(2):149-162. doi: 10.3233/WOR-172610.

7.

In Silico Analysis of the Regulation of the Photosynthetic Electron Transport Chain in C3 Plants.

Morales A, Yin X, Harbinson J, Driever SM, Molenaar J, Kramer DM, Struik PC.

Plant Physiol. 2018 Feb;176(2):1247-1261. doi: 10.1104/pp.17.00779. Epub 2017 Sep 18.

8.

Spectroanalysis in native gels (SING): rapid spectral analysis of pigmented thylakoid membrane complexes separated by CN-PAGE.

Lucker B, Schwarz E, Kuhlgert S, Ostendorf E, Kramer DM.

Plant J. 2017 Nov;92(4):744-756. doi: 10.1111/tpj.13703. Epub 2017 Oct 11.

9.

Hacking the thylakoid proton motive force for improved photosynthesis: modulating ion flux rates that control proton motive force partitioning into Δψ and ΔpH.

Davis GA, Rutherford AW, Kramer DM.

Philos Trans R Soc Lond B Biol Sci. 2017 Sep 26;372(1730). pii: 20160381. doi: 10.1098/rstb.2016.0381. Review.

10.

The Role of Light-Dark Regulation of the Chloroplast ATP Synthase.

Kohzuma K, Froehlich JE, Davis GA, Temple JA, Minhas D, Dhingra A, Cruz JA, Kramer DM.

Front Plant Sci. 2017 Jul 24;8:1248. doi: 10.3389/fpls.2017.01248. eCollection 2017.

11.

Joint Multi-Leaf Segmentation, Alignment, and Tracking for Fluorescence Plant Videos.

Yin X, Liu X, Chen J, Kramer DM.

IEEE Trans Pattern Anal Mach Intell. 2018 Jun;40(6):1411-1423. doi: 10.1109/TPAMI.2017.2728065. Epub 2017 Jul 17.

PMID:
28715326
12.
13.

Retrotransposons Are the Major Contributors to the Expansion of the Drosophila ananassae Muller F Element.

Leung W, Shaffer CD, Chen EJ, Quisenberry TJ, Ko K, Braverman JM, Giarla TC, Mortimer NT, Reed LK, Smith ST, Robic S, McCartha SR, Perry DR, Prescod LM, Sheppard ZA, Saville KJ, McClish A, Morlock EA, Sochor VR, Stanton B, Veysey-White IC, Revie D, Jimenez LA, Palomino JJ, Patao MD, Patao SM, Himelblau ET, Campbell JD, Hertz AL, McEvilly MF, Wagner AR, Youngblom J, Bedi B, Bettincourt J, Duso E, Her M, Hilton W, House S, Karimi M, Kumimoto K, Lee R, Lopez D, Odisho G, Prasad R, Robbins HL, Sandhu T, Selfridge T, Tsukashima K, Yosif H, Kokan NP, Britt L, Zoellner A, Spana EP, Chlebina BT, Chong I, Friedman H, Mammo DA, Ng CL, Nikam VS, Schwartz NU, Xu TQ, Burg MG, Batten SM, Corbeill LM, Enoch E, Ensign JJ, Franks ME, Haiker B, Ingles JA, Kirkland LD, Lorenz-Guertin JM, Matthews J, Mittig CM, Monsma N, Olson KJ, Perez-Aragon G, Ramic A, Ramirez JR, Scheiber C, Schneider PA, Schultz DE, Simon M, Spencer E, Wernette AC, Wykle ME, Zavala-Arellano E, McDonald MJ, Ostby K, Wendland P, DiAngelo JR, Ceasrine AM, Cox AH, Docherty JEB, Gingras RM, Grieb SM, Pavia MJ, Personius CL, Polak GL, Beach DL, Cerritos HL, Horansky EA, Sharif KA, Moran R, Parrish S, Bickford K, Bland J, Broussard J, Campbell K, Deibel KE, Forka R, Lemke MC, Nelson MB, O'Keeffe C, Ramey SM, Schmidt L, Villegas P, Jones CJ, Christ SL, Mamari S, Rinaldi AS, Stity G, Hark AT, Scheuerman M, Silver Key SC, McRae BD, Haberman AS, Asinof S, Carrington H, Drumm K, Embry T, McGuire R, Miller-Foreman D, Rosen S, Safa N, Schultz D, Segal M, Shevin Y, Svoronos P, Vuong T, Skuse G, Paetkau DW, Bridgman RK, Brown CM, Carroll AR, Gifford FM, Gillespie JB, Herman SE, Holtcamp KL, Host MA, Hussey G, Kramer DM, Lawrence JQ, Martin MM, Niemiec EN, O'Reilly AP, Pahl OA, Quintana G, Rettie EAS, Richardson TL, Rodriguez AE, Rodriguez MO, Schiraldi L, Smith JJ, Sugrue KF, Suriano LJ, Takach KE, Vasquez AM, Velez X, Villafuerte EJ, Vives LT, Zellmer VR, Hauke J, Hauser CR, Barker K, Cannon L, Parsamian P, Parsons S, Wichman Z, Bazinet CW, Johnson DE, Bangura A, Black JA, Chevee V, Einsteen SA, Hilton SK, Kollmer M, Nadendla R, Stamm J, Fafara-Thompson AE, Gygi AM, Ogawa EE, Van Camp M, Kocsisova Z, Leatherman JL, Modahl CM, Rubin MR, Apiz-Saab SS, Arias-Mejias SM, Carrion-Ortiz CF, Claudio-Vazquez PN, Espada-Green DM, Feliciano-Camacho M, Gonzalez-Bonilla KM, Taboas-Arroyo M, Vargas-Franco D, Montañez-Gonzalez R, Perez-Otero J, Rivera-Burgos M, Rivera-Rosario FJ, Eisler HL, Alexander J, Begley SK, Gabbard D, Allen RJ, Aung WY, Barshop WD, Boozalis A, Chu VP, Davis JS, Duggal RN, Franklin R, Gavinski K, Gebreyesus H, Gong HZ, Greenstein RA, Guo AD, Hanson C, Homa KE, Hsu SC, Huang Y, Huo L, Jacobs S, Jia S, Jung KL, Wai-Chee Kong S, Kroll MR, Lee BM, Lee PF, Levine KM, Li AS, Liu C, Liu MM, Lousararian AP, Lowery PB, Mallya AP, Marcus JE, Ng PC, Nguyen HP, Patel R, Precht H, Rastogi S, Sarezky JM, Schefkind A, Schultz MB, Shen D, Skorupa T, Spies NC, Stancu G, Vivian Tsang HM, Turski AL, Venkat R, Waldman LE, Wang K, Wang T, Wei JW, Wu DY, Xiong DD, Yu J, Zhou K, McNeil GP, Fernandez RW, Menzies PG, Gu T, Buhler J, Mardis ER, Elgin SCR.

G3 (Bethesda). 2017 Aug 7;7(8):2439-2460. doi: 10.1534/g3.117.040907.

14.

Variations in chloroplast movement and chlorophyll fluorescence among chloroplast division mutants under light stress.

Dutta S, Cruz JA, Imran SM, Chen J, Kramer DM, Osteryoung KW.

J Exp Bot. 2017 Jun 15;68(13):3541-3555. doi: 10.1093/jxb/erx203.

15.

The higher plant plastid NAD(P)H dehydrogenase-like complex (NDH) is a high efficiency proton pump that increases ATP production by cyclic electron flow.

Strand DD, Fisher N, Kramer DM.

J Biol Chem. 2017 Jul 14;292(28):11850-11860. doi: 10.1074/jbc.M116.770792. Epub 2017 May 30.

16.

Chloroplast ATP Synthase Modulation of the Thylakoid Proton Motive Force: Implications for Photosystem I and Photosystem II Photoprotection.

Kanazawa A, Ostendorf E, Kohzuma K, Hoh D, Strand DD, Sato-Cruz M, Savage L, Cruz JA, Fisher N, Froehlich JE, Kramer DM.

Front Plant Sci. 2017 May 3;8:719. doi: 10.3389/fpls.2017.00719. eCollection 2017.

17.

PhenoCurve: capturing dynamic phenotype-environment relationships using phenomics data.

Yang Y, Xu L, Feng Z, Cruz JA, Savage LJ, Kramer DM, Chen J.

Bioinformatics. 2017 May 1;33(9):1370-1378. doi: 10.1093/bioinformatics/btw673.

PMID:
28453685
18.

Defects in the Expression of Chloroplast Proteins Leads to H2O2 Accumulation and Activation of Cyclic Electron Flow around Photosystem I.

Strand DD, Livingston AK, Satoh-Cruz M, Koepke T, Enlow HM, Fisher N, Froehlich JE, Cruz JA, Minhas D, Hixson KK, Kohzuma K, Lipton M, Dhingra A, Kramer DM.

Front Plant Sci. 2017 Jan 13;7:2073. doi: 10.3389/fpls.2016.02073. eCollection 2016.

19.

MultispeQ Beta: a tool for large-scale plant phenotyping connected to the open PhotosynQ network.

Kuhlgert S, Austic G, Zegarac R, Osei-Bonsu I, Hoh D, Chilvers MI, Roth MG, Bi K, TerAvest D, Weebadde P, Kramer DM.

R Soc Open Sci. 2016 Oct 26;3(10):160592. eCollection 2016 Oct.

20.

Increased Photochemical Efficiency in Cyanobacteria via an Engineered Sucrose Sink.

Abramson BW, Kachel B, Kramer DM, Ducat DC.

Plant Cell Physiol. 2016 Dec;57(12):2451-2460. Epub 2016 Oct 13.

PMID:
27742883
21.

Limitations to photosynthesis by proton motive force-induced photosystem II photodamage.

Davis GA, Kanazawa A, Schöttler MA, Kohzuma K, Froehlich JE, Rutherford AW, Satoh-Cruz M, Minhas D, Tietz S, Dhingra A, Kramer DM.

Elife. 2016 Oct 4;5. pii: e16921. doi: 10.7554/eLife.16921.

22.

Rewiring of jasmonate and phytochrome B signalling uncouples plant growth-defense tradeoffs.

Campos ML, Yoshida Y, Major IT, de Oliveira Ferreira D, Weraduwage SM, Froehlich JE, Johnson BF, Kramer DM, Jander G, Sharkey TD, Howe GA.

Nat Commun. 2016 Aug 30;7:12570. doi: 10.1038/ncomms12570.

23.

Dynamic Environmental Photosynthetic Imaging Reveals Emergent Phenotypes.

Cruz JA, Savage LJ, Zegarac R, Hall CC, Satoh-Cruz M, Davis GA, Kovac WK, Chen J, Kramer DM.

Cell Syst. 2016 Jun 22;2(6):365-77. doi: 10.1016/j.cels.2016.06.001.

24.

Multi-level regulation of the chloroplast ATP synthase: the chloroplast NADPH thioredoxin reductase C (NTRC) is required for redox modulation specifically under low irradiance.

Carrillo LR, Froehlich JE, Cruz JA, Savage LJ, Kramer DM.

Plant J. 2016 Sep;87(6):654-63. doi: 10.1111/tpj.13226. Epub 2016 Aug 6.

25.

Inter-functional analysis of high-throughput phenotype data by non-parametric clustering and its application to photosynthesis.

Gao Q, Ostendorf E, Cruz JA, Jin R, Kramer DM, Chen J.

Bioinformatics. 2016 Jan 1;32(1):67-76. doi: 10.1093/bioinformatics/btv515. Epub 2015 Sep 3.

PMID:
26342101
27.

Redox regulation of the antimycin A sensitive pathway of cyclic electron flow around photosystem I in higher plant thylakoids.

Strand DD, Fisher N, Davis GA, Kramer DM.

Biochim Biophys Acta. 2016 Jan;1857(1):1-6. doi: 10.1016/j.bbabio.2015.07.012. Epub 2015 Jul 31.

28.

Sun Safety at Work Canada: a multiple case-study protocol to develop sun safety and heat protection programs and policies for outdoor workers.

Kramer DM, Tenkate T, Strahlendorf P, Kushner R, Gardner A, Holness DL.

Implement Sci. 2015 Jul 10;10:97. doi: 10.1186/s13012-015-0277-2.

29.

Activation of cyclic electron flow by hydrogen peroxide in vivo.

Strand DD, Livingston AK, Satoh-Cruz M, Froehlich JE, Maurino VG, Kramer DM.

Proc Natl Acad Sci U S A. 2015 Apr 28;112(17):5539-44. doi: 10.1073/pnas.1418223112. Epub 2015 Apr 13.

30.

Differential effects of ambient or diminished CO2 and O2 levels on thylakoid membrane structure in light-stressed plants.

Tsabari O, Nevo R, Meir S, Carrillo LR, Kramer DM, Reich Z.

Plant J. 2015 Mar;81(6):884-94. doi: 10.1111/tpj.12774.

31.

Plant photosynthesis phenomics data quality control.

Xu L, Cruz JA, Savage LJ, Kramer DM, Chen J.

Bioinformatics. 2015 Jun 1;31(11):1796-804. doi: 10.1093/bioinformatics/btu854. Epub 2015 Jan 22.

PMID:
25617414
32.

The regulation of photosynthetic structure and function during nitrogen deprivation in Chlamydomonas reinhardtii.

Juergens MT, Deshpande RR, Lucker BF, Park JJ, Wang H, Gargouri M, Holguin FO, Disbrow B, Schaub T, Skepper JN, Kramer DM, Gang DR, Hicks LM, Shachar-Hill Y.

Plant Physiol. 2015 Feb;167(2):558-73. doi: 10.1104/pp.114.250530. Epub 2014 Dec 8.

33.

Ion antiport accelerates photosynthetic acclimation in fluctuating light environments.

Armbruster U, Carrillo LR, Venema K, Pavlovic L, Schmidtmann E, Kornfeld A, Jahns P, Berry JA, Kramer DM, Jonikas MC.

Nat Commun. 2014 Nov 13;5:5439. doi: 10.1038/ncomms6439.

34.

Non-photochemical reduction of thylakoid photosynthetic redox carriers in vitro: relevance to cyclic electron flow around photosystem I?

Fisher N, Kramer DM.

Biochim Biophys Acta. 2014 Dec;1837(12):1944-1954. doi: 10.1016/j.bbabio.2014.09.005.

35.

Temporal Dynamics of Growth and Photosynthesis Suppression in Response to Jasmonate Signaling.

Attaran E, Major IT, Cruz JA, Rosa BA, Koo AJ, Chen J, Kramer DM, He SY, Howe GA.

Plant Physiol. 2014 Jul;165(3):1302-1314. Epub 2014 May 12.

36.

Plastidial transporters KEA1, -2, and -3 are essential for chloroplast osmoregulation, integrity, and pH regulation in Arabidopsis.

Kunz HH, Gierth M, Herdean A, Satoh-Cruz M, Kramer DM, Spetea C, Schroeder JI.

Proc Natl Acad Sci U S A. 2014 May 20;111(20):7480-5. doi: 10.1073/pnas.1323899111. Epub 2014 May 2.

37.

The site of regulation of light capture in Symbiodinium: does the peridinin-chlorophyll a-protein detach to regulate light capture?

Kanazawa A, Blanchard GJ, Szabó M, Ralph PJ, Kramer DM.

Biochim Biophys Acta. 2014 Aug;1837(8):1227-34. doi: 10.1016/j.bbabio.2014.03.019. Epub 2014 Apr 8.

38.

The response of cyclic electron flow around photosystem I to changes in photorespiration and nitrate assimilation.

Walker BJ, Strand DD, Kramer DM, Cousins AB.

Plant Physiol. 2014 May;165(1):453-62. doi: 10.1104/pp.114.238238. Epub 2014 Mar 24.

39.

Functional approach to high-throughput plant growth analysis.

Tessmer OL, Jiao Y, Cruz JA, Kramer DM, Chen J.

BMC Syst Biol. 2013;7 Suppl 6:S17. doi: 10.1186/1752-0509-7-S6-S17. Epub 2013 Dec 13.

40.

The coordination of C4 photosynthesis and the CO2-concentrating mechanism in maize and Miscanthus x giganteus in response to transient changes in light quality.

Sun W, Ubierna N, Ma JY, Walker BJ, Kramer DM, Cousins AB.

Plant Physiol. 2014 Mar;164(3):1283-92. doi: 10.1104/pp.113.224683. Epub 2014 Jan 31.

41.

The effect of Diel temperature and light cycles on the growth of nannochloropsis oculata in a photobioreactor matrix.

Tamburic B, Guruprasad S, Radford DT, Szabó M, Lilley RM, Larkum AW, Franklin JB, Kramer DM, Blackburn SI, Raven JA, Schliep M, Ralph PJ.

PLoS One. 2014 Jan 20;9(1):e86047. doi: 10.1371/journal.pone.0086047. eCollection 2014.

42.

Increasing Phosphatidylinositol (4,5)-Bisphosphate Biosynthesis Affects Basal Signaling and Chloroplast Metabolism in Arabidopsis thaliana.

Im YJ, Smith CM, Phillippy BQ, Strand D, Kramer DM, Grunden AM, Boss WF.

Plants (Basel). 2014 Jan 3;3(1):27-57. doi: 10.3390/plants3010027.

43.

Regulation of cyclic electron flow in Chlamydomonas reinhardtii under fluctuating carbon availability.

Lucker B, Kramer DM.

Photosynth Res. 2013 Nov;117(1-3):449-59. doi: 10.1007/s11120-013-9932-0. Epub 2013 Oct 10.

PMID:
24113925
44.

A caged, destabilized, free radical intermediate in the q-cycle.

Vennam PR, Fisher N, Krzyaniak MD, Kramer DM, Bowman MK.

Chembiochem. 2013 Sep 23;14(14):1745-53. doi: 10.1002/cbic.201300265. Epub 2013 Sep 5.

45.

Did you have an impact? A theory-based method for planning and evaluating knowledge-transfer and exchange activities in occupational health and safety.

Kramer DM, Wells RP, Carlan N, Aversa T, Bigelow PP, Dixon SM, McMillan K.

Int J Occup Saf Ergon. 2013;19(1):41-62.

PMID:
23498710
46.

Light- and metabolism-related regulation of the chloroplast ATP synthase has distinct mechanisms and functions.

Kohzuma K, Dal Bosco C, Meurer J, Kramer DM.

J Biol Chem. 2013 May 3;288(18):13156-63. doi: 10.1074/jbc.M113.453225. Epub 2013 Mar 13.

47.

A kinetic model of rapidly reversible nonphotochemical quenching.

Zaks J, Amarnath K, Kramer DM, Niyogi KK, Fleming GR.

Proc Natl Acad Sci U S A. 2012 Sep 25;109(39):15757-62. Epub 2012 Aug 13.

48.

The efficiency of C4 photosynthesis under low light conditions in Zea mays, Miscanthus x giganteus and Flaveria bidentis.

Ubierna N, Sun W, Kramer DM, Cousins AB.

Plant Cell Environ. 2013 Feb;36(2):365-81. doi: 10.1111/j.1365-3040.2012.02579.x. Epub 2012 Aug 15.

49.

Digging into construction: social networks and their potential impact on knowledge transfer.

Carlan NA, Kramer DM, Bigelow P, Wells R, Garritano E, Vi P.

Work. 2012;42(2):223-32. doi: 10.3233/WOR-2012-1345.

PMID:
22699189
50.

Thioredoxin-insensitive plastid ATP synthase that performs moonlighting functions.

Kohzuma K, Dal Bosco C, Kanazawa A, Dhingra A, Nitschke W, Meurer J, Kramer DM.

Proc Natl Acad Sci U S A. 2012 Feb 28;109(9):3293-8. doi: 10.1073/pnas.1115728109. Epub 2012 Feb 10.

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