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Items: 1 to 50 of 67

1.

Conflicts of interest improve collective computation of adaptive social structures.

Brush ER, Krakauer DC, Flack JC.

Sci Adv. 2018 Jan 17;4(1):e1603311. doi: 10.1126/sciadv.1603311. eCollection 2018 Jan.

2.

Collective memory in primate conflict implied by temporal scaling collapse.

Lee ED, Daniels BC, Krakauer DC, Flack JC.

J R Soc Interface. 2017 Sep;14(134). pii: 20170223. doi: 10.1098/rsif.2017.0223.

3.

Dual Coding Theory Explains Biphasic Collective Computation in Neural Decision-Making.

Daniels BC, Flack JC, Krakauer DC.

Front Neurosci. 2017 Jun 6;11:313. doi: 10.3389/fnins.2017.00313. eCollection 2017.

4.

Control of finite critical behaviour in a small-scale social system.

Daniels BC, Krakauer DC, Flack JC.

Nat Commun. 2017 Feb 10;8:14301. doi: 10.1038/ncomms14301.

5.

Design specifications for cellular regulation.

Krakauer DC, Müller L, Prohaska SJ, Stadler PF.

Theory Biosci. 2016 Dec;135(4):231-240. Epub 2016 Nov 18.

PMID:
27864730
6.

Quantifying collectivity.

Daniels BC, Ellison CJ, Krakauer DC, Flack JC.

Curr Opin Neurobiol. 2016 Apr;37:106-113. doi: 10.1016/j.conb.2016.01.012. Epub 2016 Feb 12. Review.

7.

A family of algorithms for computing consensus about node state from network data.

Brush ER, Krakauer DC, Flack JC.

PLoS Comput Biol. 2013;9(7):e1003109. doi: 10.1371/journal.pcbi.1003109. Epub 2013 Jul 18.

8.

Sparse code of conflict in a primate society.

Daniels BC, Krakauer DC, Flack JC.

Proc Natl Acad Sci U S A. 2012 Aug 28;109(35):14259-64. doi: 10.1073/pnas.1203021109. Epub 2012 Aug 13.

9.

Quantitative patterns of stylistic influence in the evolution of literature.

Hughes JM, Foti NJ, Krakauer DC, Rockmore DN.

Proc Natl Acad Sci U S A. 2012 May 15;109(20):7682-6. doi: 10.1073/pnas.1115407109. Epub 2012 Apr 30.

10.

Dynamics and processing in finite self-similar networks.

DeDeo S, Krakauer DC.

J R Soc Interface. 2012 Sep 7;9(74):2131-44. doi: 10.1098/rsif.2011.0840. Epub 2012 Feb 29.

11.

Darwinian demons, evolutionary complexity, and information maximization.

Krakauer DC.

Chaos. 2011 Sep;21(3):037110. doi: 10.1063/1.3643064.

PMID:
21974673
12.

Challenges for complexity measures: A perspective from social dynamics and collective social computation.

Flack JC, Krakauer DC.

Chaos. 2011 Sep;21(3):037108. doi: 10.1063/1.3643063.

PMID:
21974671
13.

The immuno-dynamics of conflict intervention in social systems.

Krakauer DC, Page K, Flack J.

PLoS One. 2011;6(8):e22709. doi: 10.1371/journal.pone.0022709. Epub 2011 Aug 24.

14.

The challenges and scope of theoretical biology.

Krakauer DC, Collins JP, Erwin D, Flack JC, Fontana W, Laubichler MD, Prohaska SJ, West GB, Stadler PF.

J Theor Biol. 2011 May 7;276(1):269-76. doi: 10.1016/j.jtbi.2011.01.051. Epub 2011 Feb 15.

PMID:
21315730
15.

Better living through physics.

Krakauer DC, Flack JC.

Nature. 2010 Oct 7;467(7316):661. doi: 10.1038/467661a. No abstract available.

PMID:
20930827
16.

Inductive game theory and the dynamics of animal conflict.

DeDeo S, Krakauer DC, Flack JC.

PLoS Comput Biol. 2010 May 13;6(5):e1000782. doi: 10.1371/journal.pcbi.1000782.

17.

Innovation in gene regulation: the case of chromatin computation.

Prohaska SJ, Stadler PF, Krakauer DC.

J Theor Biol. 2010 Jul 7;265(1):27-44. doi: 10.1016/j.jtbi.2010.03.011. Epub 2010 Mar 18.

PMID:
20303358
18.

Defining genes: a computational framework.

Stadler PF, Prohaska SJ, Forst CV, Krakauer DC.

Theory Biosci. 2009 Aug;128(3):165-70. doi: 10.1007/s12064-009-0067-y. Epub 2009 Jun 26.

19.

Diversity, dilemmas, and monopolies of niche construction.

Krakauer DC, Page KM, Erwin DH.

Am Nat. 2009 Jan;173(1):26-40. doi: 10.1086/593707.

PMID:
19061421
20.

An end to endless forms: epistasis, phenotype distribution bias, and nonuniform evolution.

Borenstein E, Krakauer DC.

PLoS Comput Biol. 2008 Oct;4(10):e1000202. doi: 10.1371/journal.pcbi.1000202. Epub 2008 Oct 24.

21.

Complete genome viral phylogenies suggests the concerted evolution of regulatory cores and accessory satellites.

de Andrade Zanotto PM, Krakauer DC.

PLoS One. 2008;3(10):e3500. doi: 10.1371/journal.pone.0003500. Epub 2008 Oct 22.

22.

Developmental autonomy and somatic niche construction promotes robust cell fate decisions.

Bershad AK, Fuentes MA, Krakauer DC.

J Theor Biol. 2008 Sep 21;254(2):408-16. doi: 10.1016/j.jtbi.2008.05.018. Epub 2008 May 24.

PMID:
18602649
24.

The evolution of developmental patterning under genetic duplication constraints.

Fuentes MA, Krakauer DC.

J R Soc Interface. 2008 Feb 6;5(19):237-45.

25.

Geometric robustness theory and biological networks.

Ay N, Krakauer DC.

Theory Biosci. 2007 Apr;125(2):93-121. Epub 2006 Aug 2.

PMID:
17412290
26.

Polyspecificity of T cell and B cell receptor recognition.

Wucherpfennig KW, Allen PM, Celada F, Cohen IR, De Boer R, Garcia KC, Goldstein B, Greenspan R, Hafler D, Hodgkin P, Huseby ES, Krakauer DC, Nemazee D, Perelson AS, Pinilla C, Strong RK, Sercarz EE.

Semin Immunol. 2007 Aug;19(4):216-24. Epub 2007 Mar 29. Review.

27.

Robustness and complexity co-constructed in multimodal signalling networks.

Ay N, Flack J, Krakauer DC.

Philos Trans R Soc Lond B Biol Sci. 2007 Mar 29;362(1479):441-7.

28.

Encoding power in communication networks.

Flack JC, Krakauer DC.

Am Nat. 2006 Sep;168(3):E87-102. Epub 2006 Jul 28.

PMID:
16947103
29.

The greater than twofold cost of integration for retroviruses.

Krakauer DC, Sasaki A.

Proc Biol Sci. 2006 May 7;273(1590):1159-63.

30.

Policing stabilizes construction of social niches in primates.

Flack JC, Girvan M, de Waal FB, Krakauer DC.

Nature. 2006 Jan 26;439(7075):426-9.

PMID:
16437106
31.

Robustness mechanisms in primate societies: a perturbation study.

Flack JC, Krakauer DC, de Waal FB.

Proc Biol Sci. 2005 Jun 7;272(1568):1091-9.

32.

Social structure, robustness, and policing cost in a cognitively sophisticated species.

Flack JC, de Waal FB, Krakauer DC.

Am Nat. 2005 May;165(5):E126-39. Epub 2005 Mar 14.

PMID:
15795848
33.

Evolution. Insights into innovation.

Erwin DH, Krakauer DC.

Science. 2004 May 21;304(5674):1117-9. No abstract available.

PMID:
15155937
34.

Evolution. Transitions from nonliving to living matter.

Rasmussen S, Chen L, Deamer D, Krakauer DC, Packard NH, Stadler PF, Bedau MA.

Science. 2004 Feb 13;303(5660):963-5. No abstract available.

PMID:
14963315
35.

Levels of selection in positive-strand virus dynamics.

Krakauer DC, Komarova NL.

J Evol Biol. 2003 Jan;16(1):64-73.

36.

Noisy clues to the origin of life.

Krakauer DC, Sasaki A.

Proc Biol Sci. 2002 Dec 7;269(1508):2423-8. Review.

37.

Module dynamics of the GnRH signal transduction network.

Krakauer DC, Page KM, Sealfon S.

J Theor Biol. 2002 Oct 21;218(4):457-70.

PMID:
12384049
38.

Red queen dynamics of protein translation.

Krakauer DC, Jansen VA.

J Theor Biol. 2002 Sep 7;218(1):97-109.

PMID:
12297073
39.

Selective imitation for a private sign system.

Krakauer DC.

J Theor Biol. 2001 Nov 21;213(2):145-57.

PMID:
11894987
40.

Redundancy, antiredundancy, and the robustness of genomes.

Krakauer DC, Plotkin JB.

Proc Natl Acad Sci U S A. 2002 Feb 5;99(3):1405-9. Epub 2002 Jan 29.

41.

Genetic instability and the evolution of angiogenic tumor cell lines (review).

Wodarz D, Krakauer DC.

Oncol Rep. 2001 Nov-Dec;8(6):1195-201. Review.

PMID:
11605033
42.

Evolving cell death in the virus-infected nervous system.

Krakauer DC.

Trends Neurosci. 2000 Dec;23(12):611-2. No abstract available.

PMID:
11221776
43.
44.

Error, population structure and the origin of diverse sign systems.

Grassly NC, Von Haeseler A, Krakauer DC.

J Theor Biol. 2000 Oct 7;206(3):369-78.

PMID:
10988022
45.

Mapping the parameters of prion-induced neuropathology.

Stumpf MP, Krakauer DC.

Proc Natl Acad Sci U S A. 2000 Sep 12;97(19):10573-7.

46.

Stability and evolution of overlapping genes.

Krakauer DC.

Evolution. 2000 Jun;54(3):731-9.

PMID:
10937248
47.

Defining CTL-induced pathology: implications for HIV.

Wodarz D, Krakauer DC.

Virology. 2000 Aug 15;274(1):94-104.

48.

An error limit for the evolution of language.

Nowak MA, Krakauer DC, Dress A.

Proc Biol Sci. 1999 Oct 22;266(1433):2131-6.

49.

Evolutionary preservation of redundant duplicated genes.

Krakauer DC, Nowak MA.

Semin Cell Dev Biol. 1999 Oct;10(5):555-9. Review.

PMID:
10597640
50.

The evolutionary language game.

Nowak MA, Plotkin JB, Krakauer DC.

J Theor Biol. 1999 Sep 21;200(2):147-62.

PMID:
10504282

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