Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 86

1.

Conflicts of interest improve collective computation of adaptive social structures.

Brush ER, Krakauer DC, Flack JC.

Sci Adv. 2018 Jan 17;4(1):e1603311. doi: 10.1126/sciadv.1603311. eCollection 2018 Jan.

2.

Collective memory in primate conflict implied by temporal scaling collapse.

Lee ED, Daniels BC, Krakauer DC, Flack JC.

J R Soc Interface. 2017 Sep;14(134). pii: 20170223. doi: 10.1098/rsif.2017.0223.

3.

Dual Coding Theory Explains Biphasic Collective Computation in Neural Decision-Making.

Daniels BC, Flack JC, Krakauer DC.

Front Neurosci. 2017 Jun 6;11:313. doi: 10.3389/fnins.2017.00313. eCollection 2017.

4.

Control of finite critical behaviour in a small-scale social system.

Daniels BC, Krakauer DC, Flack JC.

Nat Commun. 2017 Feb 10;8:14301. doi: 10.1038/ncomms14301.

5.

Design specifications for cellular regulation.

Krakauer DC, Müller L, Prohaska SJ, Stadler PF.

Theory Biosci. 2016 Dec;135(4):231-240. Epub 2016 Nov 18.

PMID:
27864730
6.

Quantifying collectivity.

Daniels BC, Ellison CJ, Krakauer DC, Flack JC.

Curr Opin Neurobiol. 2016 Apr;37:106-113. doi: 10.1016/j.conb.2016.01.012. Epub 2016 Feb 12. Review.

7.

A family of algorithms for computing consensus about node state from network data.

Brush ER, Krakauer DC, Flack JC.

PLoS Comput Biol. 2013;9(7):e1003109. doi: 10.1371/journal.pcbi.1003109. Epub 2013 Jul 18.

8.

Complex matrix remodeling and durotaxis can emerge from simple rules for cell-matrix interaction in agent-based models.

Reinhardt JW, Krakauer DA, Gooch KJ.

J Biomech Eng. 2013 Jul 1;135(7):71003. doi: 10.1115/1.4024463.

9.

Sparse code of conflict in a primate society.

Daniels BC, Krakauer DC, Flack JC.

Proc Natl Acad Sci U S A. 2012 Aug 28;109(35):14259-64. doi: 10.1073/pnas.1203021109. Epub 2012 Aug 13.

10.

Quantitative patterns of stylistic influence in the evolution of literature.

Hughes JM, Foti NJ, Krakauer DC, Rockmore DN.

Proc Natl Acad Sci U S A. 2012 May 15;109(20):7682-6. doi: 10.1073/pnas.1115407109. Epub 2012 Apr 30.

11.

Dynamics and processing in finite self-similar networks.

DeDeo S, Krakauer DC.

J R Soc Interface. 2012 Sep 7;9(74):2131-44. doi: 10.1098/rsif.2011.0840. Epub 2012 Feb 29.

12.

Nonequilibrium phase transitions in biomolecular signal transduction.

Smith E, Krishnamurthy S, Fontana W, Krakauer D.

Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Nov;84(5 Pt 1):051917. Epub 2011 Nov 23.

PMID:
22181454
13.

Darwinian demons, evolutionary complexity, and information maximization.

Krakauer DC.

Chaos. 2011 Sep;21(3):037110. doi: 10.1063/1.3643064.

PMID:
21974673
14.

Challenges for complexity measures: A perspective from social dynamics and collective social computation.

Flack JC, Krakauer DC.

Chaos. 2011 Sep;21(3):037108. doi: 10.1063/1.3643063.

PMID:
21974671
15.

The immuno-dynamics of conflict intervention in social systems.

Krakauer DC, Page K, Flack J.

PLoS One. 2011;6(8):e22709. doi: 10.1371/journal.pone.0022709. Epub 2011 Aug 24.

16.

Evidence of strategic periodicities in collective conflict dynamics.

Dedeo S, Krakauer D, Flack J.

J R Soc Interface. 2011 Sep 7;8(62):1260-73. doi: 10.1098/rsif.2010.0687. Epub 2011 Feb 16.

17.

The challenges and scope of theoretical biology.

Krakauer DC, Collins JP, Erwin D, Flack JC, Fontana W, Laubichler MD, Prohaska SJ, West GB, Stadler PF.

J Theor Biol. 2011 May 7;276(1):269-76. doi: 10.1016/j.jtbi.2011.01.051. Epub 2011 Feb 15.

PMID:
21315730
18.

Better living through physics.

Krakauer DC, Flack JC.

Nature. 2010 Oct 7;467(7316):661. doi: 10.1038/467661a. No abstract available.

PMID:
20930827
19.

Inductive game theory and the dynamics of animal conflict.

DeDeo S, Krakauer DC, Flack JC.

PLoS Comput Biol. 2010 May 13;6(5):e1000782. doi: 10.1371/journal.pcbi.1000782.

20.

Innovation in gene regulation: the case of chromatin computation.

Prohaska SJ, Stadler PF, Krakauer DC.

J Theor Biol. 2010 Jul 7;265(1):27-44. doi: 10.1016/j.jtbi.2010.03.011. Epub 2010 Mar 18.

PMID:
20303358
21.

Defining genes: a computational framework.

Stadler PF, Prohaska SJ, Forst CV, Krakauer DC.

Theory Biosci. 2009 Aug;128(3):165-70. doi: 10.1007/s12064-009-0067-y. Epub 2009 Jun 26.

22.

Diversity, dilemmas, and monopolies of niche construction.

Krakauer DC, Page KM, Erwin DH.

Am Nat. 2009 Jan;173(1):26-40. doi: 10.1086/593707.

PMID:
19061421
23.

An end to endless forms: epistasis, phenotype distribution bias, and nonuniform evolution.

Borenstein E, Krakauer DC.

PLoS Comput Biol. 2008 Oct;4(10):e1000202. doi: 10.1371/journal.pcbi.1000202. Epub 2008 Oct 24.

24.

Complete genome viral phylogenies suggests the concerted evolution of regulatory cores and accessory satellites.

de Andrade Zanotto PM, Krakauer DC.

PLoS One. 2008;3(10):e3500. doi: 10.1371/journal.pone.0003500. Epub 2008 Oct 22.

25.

Developmental autonomy and somatic niche construction promotes robust cell fate decisions.

Bershad AK, Fuentes MA, Krakauer DC.

J Theor Biol. 2008 Sep 21;254(2):408-16. doi: 10.1016/j.jtbi.2008.05.018. Epub 2008 May 24.

PMID:
18602649
27.

The evolution of developmental patterning under genetic duplication constraints.

Fuentes MA, Krakauer DC.

J R Soc Interface. 2008 Feb 6;5(19):237-45.

28.

The stochastic behavior of a molecular switching circuit with feedback.

Krishnamurthy S, Smith E, Krakauer D, Fontana W.

Biol Direct. 2007 May 31;2:13.

29.

Geometric robustness theory and biological networks.

Ay N, Krakauer DC.

Theory Biosci. 2007 Apr;125(2):93-121. Epub 2006 Aug 2.

PMID:
17412290
30.

Polyspecificity of T cell and B cell receptor recognition.

Wucherpfennig KW, Allen PM, Celada F, Cohen IR, De Boer R, Garcia KC, Goldstein B, Greenspan R, Hafler D, Hodgkin P, Huseby ES, Krakauer DC, Nemazee D, Perelson AS, Pinilla C, Strong RK, Sercarz EE.

Semin Immunol. 2007 Aug;19(4):216-24. Epub 2007 Mar 29. Review.

31.

Robustness and complexity co-constructed in multimodal signalling networks.

Ay N, Flack J, Krakauer DC.

Philos Trans R Soc Lond B Biol Sci. 2007 Mar 29;362(1479):441-7.

32.

Observation of muon neutrino disappearance with the MINOS detectors in the NuMI neutrino beam.

Michael DG, Adamson P, Alexopoulos T, Allison WW, Alner GJ, Anderson K, Andreopoulos C, Andrews M, Andrews R, Arms KE, Armstrong R, Arroyo C, Auty DJ, Avvakumov S, Ayres DS, Baller B, Barish B, Barker MA, Barnes PD Jr, Barr G, Barrett WL, Beall E, Becker BR, Belias A, Bergfeld T, Bernstein RH, Bhattacharya D, Bishai M, Blake A, Bocean V, Bock B, Bock GJ, Boehm J, Boehnlein DJ, Bogert D, Border PM, Bower C, Boyd S, Buckley-Geer E, Bungau C, Byon-Wagner A, Cabrera A, Chapman JD, Chase TR, Cherdack D, Chernichenko SK, Childress S, Choudhary BC, Cobb JH, Cossairt JD, Courant H, Crane DA, Culling AJ, Dawson JW, de Jong JK, DeMuth DM, De Santo A, Dierckxsens M, Diwan MV, Dorman M, Drake G, Drakoulakos D, Ducar R, Durkin T, Erwin AR, Escobar CO, Evans JJ, Fackler OD, Falk Harris E, Feldman GJ, Felt N, Fields TH, Ford R, Frohne MV, Gallagher HR, Gebhard M, Giurgiu GA, Godley A, Gogos J, Goodman MC, Gornushkin Y, Gouffon P, Gran R, Grashorn E, Grossman N, Grudzinski JJ, Grzelak K, Guarino V, Habig A, Halsall R, Hanson J, Harris D, Harris PG, Hartnell J, Hartouni EP, Hatcher R, Heller K, Hill N, Ho Y, Holin A, Howcroft C, Hylen J, Ignatenko M, Indurthy D, Irwin GM, Ishitsuka M, Jaffe DE, James C, Jenner L, Jensen D, Joffe-Minor T, Kafka T, Kang HJ, Kasahara SM, Kilmer J, Kim H, Kim MS, Koizumi G, Kopp S, Kordosky M, Koskinen DJ, Kostin M, Kotelnikov SK, Krakauer DA, Kreymer A, Kumaratunga S, Ladran AS, Lang K, Laughton C, Lebedev A, Lee R, Lee WY, Libkind MA, Ling J, Liu J, Litchfield PJ, Litchfield RP, Longley NP, Lucas P, Luebke W, Madani S, Maher E, Makeev V, Mann WA, Marchionni A, Marino AD, Marshak ML, Marshall JS, Mayer N, McDonald J, McGowan AM, Meier JR, Merzon GI, Messier MD, Milburn RH, Miller JL, Miller WH, Mishra SR, Mislivec A, Miyagawa PS, Moore CD, Morfín J, Morse R, Mualem L, Mufson S, Murgia S, Murtagh MJ, Musser J, Naples D, Nelson C, Nelson JK, Newman HB, Nezrick F, Nichol RJ, Nicholls TC, Ochoa-Ricoux JP, Oliver J, Oliver WP, Onuchin VA, Osiecki T, Ospanov R, Paley J, Paolone V, Para A, Patzak T, Pavlović Z, Pearce GF, Pearson N, Peck CW, Perry C, Peterson EA, Petyt DA, Ping H, Piteira R, Pittam R, Pla-Dalmau A, Plunkett RK, Price LE, Proga M, Pushka DR, Rahman D, Rameika RA, Raufer TM, Read AL, Rebel B, Reichenbacher J, Reyna DE, Rosenfeld C, Rubin HA, Ruddick K, Ryabov VA, Saakyan R, Sanchez MC, Saoulidou N, Schneps J, Schoessow PV, Schreiner P, Schwienhorst R, Semenov VK, Seun SM, Shanahan P, Shield PD, Smart W, Smirnitsky V, Smith C, Smith PN, Sousa A, Speakman B, Stamoulis P, Stefanik A, Sullivan P, Swan JM, Symes PA, Tagg N, Talaga RL, Terekhov A, Tetteh-Lartey E, Thomas J, Thompson J, Thomson MA, Thron JL, Tinti G, Trendler R, Trevor J, Trostin I, Tsarev VA, Tzanakos G, Urheim J, Vahle P, Vakili M, Vaziri K, Velissaris C, Verebryusov V, Viren B, Wai L, Ward CP, Ward DR, Watabe M, Weber A, Webb RC, Wehmann A, West N, White C, White RF, Wojcicki SG, Wright DM, Wu QK, Yan WG, Yang T, Yumiceva FX, Yun JC, Zheng H, Zois M, Zwaska R; MINOS Collaboration.

Phys Rev Lett. 2006 Nov 10;97(19):191801. Epub 2006 Nov 8.

PMID:
17155614
33.

Encoding power in communication networks.

Flack JC, Krakauer DC.

Am Nat. 2006 Sep;168(3):E87-102. Epub 2006 Jul 28.

PMID:
16947103
34.

The greater than twofold cost of integration for retroviruses.

Krakauer DC, Sasaki A.

Proc Biol Sci. 2006 May 7;273(1590):1159-63.

35.

Policing stabilizes construction of social niches in primates.

Flack JC, Girvan M, de Waal FB, Krakauer DC.

Nature. 2006 Jan 26;439(7075):426-9.

PMID:
16437106
36.

Robustness mechanisms in primate societies: a perturbation study.

Flack JC, Krakauer DC, de Waal FB.

Proc Biol Sci. 2005 Jun 7;272(1568):1091-9.

37.

Social structure, robustness, and policing cost in a cognitively sophisticated species.

Flack JC, de Waal FB, Krakauer DC.

Am Nat. 2005 May;165(5):E126-39. Epub 2005 Mar 14.

PMID:
15795848
38.

Evolution. Insights into innovation.

Erwin DH, Krakauer DC.

Science. 2004 May 21;304(5674):1117-9. No abstract available.

PMID:
15155937
39.

Evolution. Transitions from nonliving to living matter.

Rasmussen S, Chen L, Deamer D, Krakauer DC, Packard NH, Stadler PF, Bedau MA.

Science. 2004 Feb 13;303(5660):963-5. No abstract available.

PMID:
14963315
40.

Levels of selection in positive-strand virus dynamics.

Krakauer DC, Komarova NL.

J Evol Biol. 2003 Jan;16(1):64-73.

41.

Perspective: Evolution and detection of genetic robustness.

de Visser JA, Hermisson J, Wagner GP, Ancel Meyers L, Bagheri-Chaichian H, Blanchard JL, Chao L, Cheverud JM, Elena SF, Fontana W, Gibson G, Hansen TF, Krakauer D, Lewontin RC, Ofria C, Rice SH, von Dassow G, Wagner A, Whitlock MC.

Evolution. 2003 Sep;57(9):1959-72. Review.

PMID:
14575319
42.

From physics to phenomenology. Levels of description and levels of selection.

Krakauer D.

Novartis Found Symp. 2002;247:42-52; discussion 84-90, 244-52. Review.

PMID:
12539948
43.

Noisy clues to the origin of life.

Krakauer DC, Sasaki A.

Proc Biol Sci. 2002 Dec 7;269(1508):2423-8. Review.

44.

Module dynamics of the GnRH signal transduction network.

Krakauer DC, Page KM, Sealfon S.

J Theor Biol. 2002 Oct 21;218(4):457-70.

PMID:
12384049
45.

Red queen dynamics of protein translation.

Krakauer DC, Jansen VA.

J Theor Biol. 2002 Sep 7;218(1):97-109.

PMID:
12297073
46.

Selective imitation for a private sign system.

Krakauer DC.

J Theor Biol. 2001 Nov 21;213(2):145-57.

PMID:
11894987
47.

Redundancy, antiredundancy, and the robustness of genomes.

Krakauer DC, Plotkin JB.

Proc Natl Acad Sci U S A. 2002 Feb 5;99(3):1405-9. Epub 2002 Jan 29.

48.

Genetic instability and the evolution of angiogenic tumor cell lines (review).

Wodarz D, Krakauer DC.

Oncol Rep. 2001 Nov-Dec;8(6):1195-201. Review.

PMID:
11605033
49.

Evolving cell death in the virus-infected nervous system.

Krakauer DC.

Trends Neurosci. 2000 Dec;23(12):611-2. No abstract available.

PMID:
11221776
50.

Supplemental Content

Loading ...
Support Center