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Items: 1 to 50 of 93

1.

Temporospatial shifts in the human gut microbiome and metabolome after gastric bypass surgery.

Ilhan ZE, DiBaise JK, Dautel SE, Isern NG, Kim YM, Hoyt DW, Schepmoes AA, Brewer HM, Weitz KK, Metz TO, Crowell MD, Kang DW, Rittmann BE, Krajmalnik-Brown R.

NPJ Biofilms Microbiomes. 2020 Mar 13;6(1):12. doi: 10.1038/s41522-020-0122-5.

2.

Immune protection is dependent on the gut microbiome in a lethal mouse gammaherpesviral infection.

Yaron JR, Ambadapadi S, Zhang L, Chavan RN, Tibbetts SA, Keinan S, Varsani A, Maldonado J, Kraberger S, Tafoya AM, Bullard WL, Kilbourne J, Stern-Harbutte A, Krajmalnik-Brown R, Munk BH, Koppang EO, Lim ES, Lucas AR.

Sci Rep. 2020 Feb 11;10(1):2371. doi: 10.1038/s41598-020-59269-9.

3.

The complex puzzle of dietary silver nanoparticles, mucus and microbiota in the gut.

Bi Y, Marcus AK, Robert H, Krajmalnik-Brown R, Rittmann BE, Westerhoff P, Ropers MH, Mercier-Bonin M.

J Toxicol Environ Health B Crit Rev. 2020;23(2):69-89. doi: 10.1080/10937404.2019.1710914. Epub 2020 Jan 10.

PMID:
31920169
4.

Antibiotic-induced gut metabolome and microbiome alterations increase the susceptibility to Candida albicans colonization in the gastrointestinal tract.

Gutierrez D, Weinstock A, Antharam VC, Gu H, Jasbi P, Shi X, Dirks B, Krajmalnik-Brown R, Maldonado J, Guinan J, Thangamani S.

FEMS Microbiol Ecol. 2020 Jan 1;96(1). pii: fiz187. doi: 10.1093/femsec/fiz187.

5.

Microbiota transplant therapy and autism: lessons for the clinic.

Adams JB, Borody TJ, Kang DW, Khoruts A, Krajmalnik-Brown R, Sadowsky MJ.

Expert Rev Gastroenterol Hepatol. 2019 Nov;13(11):1033-1037. doi: 10.1080/17474124.2019.1687293. Epub 2019 Nov 7.

PMID:
31665947
6.

Human Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice.

Sharon G, Cruz NJ, Kang DW, Gandal MJ, Wang B, Kim YM, Zink EM, Casey CP, Taylor BC, Lane CJ, Bramer LM, Isern NG, Hoyt DW, Noecker C, Sweredoski MJ, Moradian A, Borenstein E, Jansson JK, Knight R, Metz TO, Lois C, Geschwind DH, Krajmalnik-Brown R, Mazmanian SK.

Cell. 2019 May 30;177(6):1600-1618.e17. doi: 10.1016/j.cell.2019.05.004.

7.

Rapidly Processed Stool Swabs Approximate Stool Microbiota Profiles.

Bokulich NA, Maldonado J, Kang DW, Krajmalnik-Brown R, Caporaso JG.

mSphere. 2019 Apr 10;4(2). pii: e00208-19. doi: 10.1128/mSphere.00208-19.

8.

Long-term benefit of Microbiota Transfer Therapy on autism symptoms and gut microbiota.

Kang DW, Adams JB, Coleman DM, Pollard EL, Maldonado J, McDonough-Means S, Caporaso JG, Krajmalnik-Brown R.

Sci Rep. 2019 Apr 9;9(1):5821. doi: 10.1038/s41598-019-42183-0.

9.

A Fruitful Discovery: Can Gut Bacteria Control Hyperactive Behavior?

Krajmalnik-Brown R.

Mol Cell. 2019 Feb 7;73(3):395-397. doi: 10.1016/j.molcel.2019.01.031.

10.

Hydrogenotrophic Microbial Reduction of Oxyanions With the Membrane Biofilm Reactor.

Zhou C, Ontiveros-Valencia A, Nerenberg R, Tang Y, Friese D, Krajmalnik-Brown R, Rittmann BE.

Front Microbiol. 2019 Jan 10;9:3268. doi: 10.3389/fmicb.2018.03268. eCollection 2018. Review.

11.

Autonomous screening of groundwater remediation technologies in the subsurface using the In Situ Microcosm Array (ISMA).

Kalinowski T, McClellan K, Bruton TA, Krajmalnik-Brown R, Driver EM, Halden RU.

J Hazard Mater. 2019 Apr 5;367:668-675. doi: 10.1016/j.jhazmat.2018.12.054. Epub 2018 Dec 26.

12.
13.

Impacts of moisture content during ozonation of soils containing residual petroleum.

Chen T, Yavuz BM, Delgado AG, Montoya G, Winkle DV, Zuo Y, Kamath R, Westerhoff P, Krajmalnik-Brown R, Rittmann BE.

J Hazard Mater. 2018 Feb 15;344:1101-1108. doi: 10.1016/j.jhazmat.2017.11.060. Epub 2017 Dec 5.

PMID:
30216969
14.

Managing microbial communities in membrane biofilm reactors.

Ontiveros-Valencia A, Zhou C, Zhao HP, Krajmalnik-Brown R, Tang Y, Rittmann BE.

Appl Microbiol Biotechnol. 2018 Nov;102(21):9003-9014. doi: 10.1007/s00253-018-9293-x. Epub 2018 Aug 20. Review.

PMID:
30128582
15.

Tracking Personal Health-Environment Interaction with Novel Mobile Sensing Devices.

Deng Y, Liu NY, Tsow F, Xian X, Krajmalnik-Brown R, Tao N, Forzani E.

Sensors (Basel). 2018 Aug 14;18(8). pii: E2670. doi: 10.3390/s18082670.

16.

Anaerobic carbon monoxide metabolism by Pleomorphomonas carboxyditropha sp. nov., a new mesophilic hydrogenogenic carboxydotroph.

Esquivel-Elizondo S, Maldonado J, Krajmalnik-Brown R.

FEMS Microbiol Ecol. 2018 Jun 1;94(6). doi: 10.1093/femsec/fiy056.

PMID:
29741624
17.

Differences in fecal microbial metabolites and microbiota of children with autism spectrum disorders.

Kang DW, Ilhan ZE, Isern NG, Hoyt DW, Howsmon DP, Shaffer M, Lozupone CA, Hahn J, Adams JB, Krajmalnik-Brown R.

Anaerobe. 2018 Feb;49:121-131. doi: 10.1016/j.anaerobe.2017.12.007. Epub 2017 Dec 22.

PMID:
29274915
18.

Impact of carbon monoxide partial pressures on methanogenesis and medium chain fatty acids production during ethanol fermentation.

Esquivel-Elizondo S, Miceli J 3rd, Torres CI, Krajmalnik-Brown R.

Biotechnol Bioeng. 2018 Feb;115(2):341-350. doi: 10.1002/bit.26471. Epub 2017 Oct 30.

PMID:
28987001
19.

The effects of CO2 and H2 on CO metabolism by pure and mixed microbial cultures.

Esquivel-Elizondo S, Delgado AG, Rittmann BE, Krajmalnik-Brown R.

Biotechnol Biofuels. 2017 Sep 16;10:220. doi: 10.1186/s13068-017-0910-1. eCollection 2017.

20.

Coupling Bioflocculation of Dehalococcoides mccartyi to High-Rate Reductive Dehalogenation of Chlorinated Ethenes.

Delgado AG, Fajardo-Williams D, Bondank E, Esquivel-Elizondo S, Krajmalnik-Brown R.

Environ Sci Technol. 2017 Oct 3;51(19):11297-11307. doi: 10.1021/acs.est.7b03097. Epub 2017 Sep 15.

PMID:
28914537
21.

Total electron acceptor loading and composition affect hexavalent uranium reduction and microbial community structure in a membrane biofilm reactor.

Ontiveros-Valencia A, Zhou C, Ilhan ZE, de Saint Cyr LC, Krajmalnik-Brown R, Rittmann BE.

Water Res. 2017 Nov 15;125:341-349. doi: 10.1016/j.watres.2017.08.060. Epub 2017 Aug 29.

PMID:
28881210
22.

Enhancing biodegradation of C16-alkyl quaternary ammonium compounds using an oxygen-based membrane biofilm reactor.

Lai YS, Ontiveros-Valencia A, Ilhan ZE, Zhou Y, Miranda E, Maldonado J, Krajmalnik-Brown R, Rittmann BE.

Water Res. 2017 Oct 15;123:825-833. doi: 10.1016/j.watres.2017.07.003. Epub 2017 Jul 2.

PMID:
28797964
23.

Insights into Butyrate Production in a Controlled Fermentation System via Gene Predictions.

Esquivel-Elizondo S, Ilhan ZE, Garcia-Peña EI, Krajmalnik-Brown R.

mSystems. 2017 Jul 18;2(4). pii: e00051-17. doi: 10.1128/mSystems.00051-17. eCollection 2017 Jul-Aug.

24.

Evolution of microbial communities growing with carbon monoxide, hydrogen, and carbon dioxide.

Esquivel-Elizondo S, Delgado AG, Krajmalnik-Brown R.

FEMS Microbiol Ecol. 2017 Jun 1;93(6). doi: 10.1093/femsec/fix076.

PMID:
28575426
25.

Distinctive microbiomes and metabolites linked with weight loss after gastric bypass, but not gastric banding.

Ilhan ZE, DiBaise JK, Isern NG, Hoyt DW, Marcus AK, Kang DW, Crowell MD, Rittmann BE, Krajmalnik-Brown R.

ISME J. 2017 Sep;11(9):2047-2058. doi: 10.1038/ismej.2017.71. Epub 2017 May 26.

26.

pH-Mediated Microbial and Metabolic Interactions in Fecal Enrichment Cultures.

Ilhan ZE, Marcus AK, Kang DW, Rittmann BE, Krajmalnik-Brown R.

mSphere. 2017 May 3;2(3). pii: e00047-17. doi: 10.1128/mSphere.00047-17. eCollection 2017 May-Jun.

27.

Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study.

Kang DW, Adams JB, Gregory AC, Borody T, Chittick L, Fasano A, Khoruts A, Geis E, Maldonado J, McDonough-Means S, Pollard EL, Roux S, Sadowsky MJ, Lipson KS, Sullivan MB, Caporaso JG, Krajmalnik-Brown R.

Microbiome. 2017 Jan 23;5(1):10. doi: 10.1186/s40168-016-0225-7.

28.

Interpreting Interactions between Ozone and Residual Petroleum Hydrocarbons in Soil.

Chen T, Delgado AG, Yavuz BM, Maldonado J, Zuo Y, Kamath R, Westerhoff P, Krajmalnik-Brown R, Rittmann BE.

Environ Sci Technol. 2017 Jan 3;51(1):506-513. doi: 10.1021/acs.est.6b04534. Epub 2016 Dec 22.

PMID:
27973790
29.

Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's Disease.

Sampson TR, Debelius JW, Thron T, Janssen S, Shastri GG, Ilhan ZE, Challis C, Schretter CE, Rocha S, Gradinaru V, Chesselet MF, Keshavarzian A, Shannon KM, Krajmalnik-Brown R, Wittung-Stafshede P, Knight R, Mazmanian SK.

Cell. 2016 Dec 1;167(6):1469-1480.e12. doi: 10.1016/j.cell.2016.11.018.

30.

Archaea and Bacteria Acclimate to High Total Ammonia in a Methanogenic Reactor Treating Swine Waste.

Esquivel-Elizondo S, Parameswaran P, Delgado AG, Maldonado J, Rittmann BE, Krajmalnik-Brown R.

Archaea. 2016 Sep 20;2016:4089684. eCollection 2016.

31.

Shifting the balance of fermentation products between hydrogen and volatile fatty acids: microbial community structure and function.

Miceli JF 3rd, Torres CI, Krajmalnik-Brown R.

FEMS Microbiol Ecol. 2016 Dec;92(12). pii: fiw195. Epub 2016 Sep 14.

32.

Impact of Ammonium on Syntrophic Organohalide-Respiring and Fermenting Microbial Communities.

Delgado AG, Fajardo-Williams D, Kegerreis KL, Parameswaran P, Krajmalnik-Brown R.

mSphere. 2016 Apr 20;1(2). pii: e00053-16. doi: 10.1128/mSphere.00053-16. eCollection 2016 Mar-Apr.

33.

Palladium Recovery in a H2-Based Membrane Biofilm Reactor: Formation of Pd(0) Nanoparticles through Enzymatic and Autocatalytic Reductions.

Zhou C, Ontiveros-Valencia A, Wang Z, Maldonado J, Zhao HP, Krajmalnik-Brown R, Rittmann BE.

Environ Sci Technol. 2016 Mar 1;50(5):2546-55. doi: 10.1021/acs.est.5b05318. Epub 2016 Feb 17.

PMID:
26883809
34.

Hydrogen-fed biofilm reactors reducing selenate and sulfate: Community structure and capture of elemental selenium within the biofilm.

Ontiveros-Valencia A, Penton CR, Krajmalnik-Brown R, Rittmann BE.

Biotechnol Bioeng. 2016 Aug;113(8):1736-44. doi: 10.1002/bit.25945. Epub 2016 Feb 4.

PMID:
26804665
35.

Approaches to studying and manipulating the enteric microbiome to improve autism symptoms.

Frye RE, Slattery J, MacFabe DF, Allen-Vercoe E, Parker W, Rodakis J, Adams JB, Krajmalnik-Brown R, Bolte E, Kahler S, Jennings J, James J, Cerniglia CE, Midtvedt T.

Microb Ecol Health Dis. 2015 May 7;26:26878. doi: 10.3402/mehd.v26.26878. eCollection 2015.

36.

Effects of phosphate limitation on soluble microbial products and microbial community structure in semi-continuous Synechocystis-based photobioreactors.

Zevin AS, Nam T, Rittmann B, Krajmalnik-Brown R.

Biotechnol Bioeng. 2015 Sep;112(9):1761-9. doi: 10.1002/bit.25602. Epub 2015 Jun 30.

PMID:
25851150
37.

Gut bacteria in children with autism spectrum disorders: challenges and promise of studying how a complex community influences a complex disease.

Krajmalnik-Brown R, Lozupone C, Kang DW, Adams JB.

Microb Ecol Health Dis. 2015 Mar 12;26:26914. doi: 10.3402/mehd.v26.26914. eCollection 2015.

38.

Genomes of Geoalkalibacter ferrihydriticus Z-0531T and Geoalkalibacter subterraneus Red1T, Two Haloalkaliphilic Metal-Reducing Deltaproteobacteria.

Badalamenti JP, Krajmalnik-Brown R, Torres CI, Bond DR.

Genome Announc. 2015 Mar 12;3(2). pii: e00039-15. doi: 10.1128/genomeA.00039-15.

39.

Gut microbial and short-chain fatty acid profiles in adults with chronic constipation before and after treatment with lubiprostone.

Kang DW, DiBaise JK, Ilhan ZE, Crowell MD, Rideout JR, Caporaso JG, Rittmann BE, Krajmalnik-Brown R.

Anaerobe. 2015 Jun;33:33-41. doi: 10.1016/j.anaerobe.2015.01.005. Epub 2015 Jan 21.

PMID:
25617726
40.

Remediation of petroleum hydrocarbon-contaminated sites by DNA diagnosis-based bioslurping technology.

Kim S, Krajmalnik-Brown R, Kim JO, Chung J.

Sci Total Environ. 2014 Nov 1;497-498:250-259. doi: 10.1016/j.scitotenv.2014.08.002. Epub 2014 Aug 15.

PMID:
25129160
41.

Uranium removal and microbial community in a H2-based membrane biofilm reactor.

Zhou C, Ontiveros-Valencia A, Cornette de Saint Cyr L, Zevin AS, Carey SE, Krajmalnik-Brown R, Rittmann BE.

Water Res. 2014 Nov 1;64:255-264. doi: 10.1016/j.watres.2014.07.013. Epub 2014 Jul 17.

PMID:
25073000
42.

Combining microbial cultures for efficient production of electricity from butyrate in a microbial electrochemical cell.

Miceli JF 3rd, Garcia-Peña I, Parameswaran P, Torres CI, Krajmalnik-Brown R.

Bioresour Technol. 2014 Oct;169:169-174. doi: 10.1016/j.biortech.2014.06.090. Epub 2014 Jul 2.

43.

Selective enrichment yields robust ethene-producing dechlorinating cultures from microcosms stalled at cis-dichloroethene.

Delgado AG, Kang DW, Nelson KG, Fajardo-Williams D, Miceli JF 3rd, Done HY, Popat SC, Krajmalnik-Brown R.

PLoS One. 2014 Jun 20;9(6):e100654. doi: 10.1371/journal.pone.0100654. eCollection 2014.

44.

Pyrosequencing analysis yields comprehensive assessment of microbial communities in pilot-scale two-stage membrane biofilm reactors.

Ontiveros-Valencia A, Tang Y, Zhao HP, Friese D, Overstreet R, Smith J, Evans P, Rittmann BE, Krajmalnik-Brown R.

Environ Sci Technol. 2014 Jul 1;48(13):7511-8. doi: 10.1021/es5012466. Epub 2014 Jun 11.

PMID:
24917125
45.

The source of inoculum plays a defining role in the development of MEC microbial consortia fed with acetic and propionic acid mixtures.

Ruiz V, Ilhan ZE, Kang DW, Krajmalnik-Brown R, Buitrón G.

J Biotechnol. 2014 Jul 20;182-183:11-8. doi: 10.1016/j.jbiotec.2014.04.016. Epub 2014 May 4.

PMID:
24798298
46.

Managing the interactions between sulfate- and perchlorate-reducing bacteria when using hydrogen-fed biofilms to treat a groundwater with a high perchlorate concentration.

Ontiveros-Valencia A, Tang Y, Krajmalnik-Brown R, Rittmann BE.

Water Res. 2014 May 15;55:215-24. doi: 10.1016/j.watres.2014.02.020. Epub 2014 Feb 22.

PMID:
24607522
47.

Removal of multiple electron acceptors by pilot-scale, two-stage membrane biofilm reactors.

Zhao HP, Ontiveros-Valencia A, Tang Y, Kim BO, Vanginkel S, Friese D, Overstreet R, Smith J, Evans P, Krajmalnik-Brown R, Rittmann B.

Water Res. 2014 May 1;54:115-22. doi: 10.1016/j.watres.2014.01.047. Epub 2014 Feb 7.

PMID:
24565802
48.

Toward effective probiotics for autism and other neurodevelopmental disorders.

Gilbert JA, Krajmalnik-Brown R, Porazinska DL, Weiss SJ, Knight R.

Cell. 2013 Dec 19;155(7):1446-8. doi: 10.1016/j.cell.2013.11.035.

49.

Successful operation of continuous reactors at short retention times results in high-density, fast-rate Dehalococcoides dechlorinating cultures.

Delgado AG, Fajardo-Williams D, Popat SC, Torres CI, Krajmalnik-Brown R.

Appl Microbiol Biotechnol. 2014 Mar;98(6):2729-37. doi: 10.1007/s00253-013-5263-5. Epub 2013 Oct 2.

PMID:
24085396
50.

Modeling trichloroethene reduction in a hydrogen-based biofilm.

Tang Y, Krajmalnik-Brown R, Rittmann BE.

Water Sci Technol. 2013;68(5):1158-63. doi: 10.2166/wst.2013.362.

PMID:
24037169

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